Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Forward (+)

27209596 .. 27214346

Gene Structure 4751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGATGCAGAGATTATTCTCCAAGCTTCGTTCTGTCTCTGTGCGCTCAGCCCAAACTCTCCCATCATCACTCTCCTCTCCTGCATTGCTTCGGTCTTGCCCTCCTCTGCTTCATCACCCTCTCCCTTTCGCTTCAATTCGTAACAAATGGACCGTCAGGTCCCTTTTCATTGCCCATTCACCGACCCAATCATTGCCGCCGGCTCTCACGGCTCTTCGTTCCTCGGCATTCCCTTTCCCAATGGTTCAAGTGCGGCATGTTTCGTCGAGGGAGCGAAAGAAGAGGAGAAAGCCGATGACTCCAGTCACTTCGAAGTTAAAGAAAACTAAAATGAAGTCTTACTCGTCTTACAAGTCCAGGTTTAGGACAATGAATGATGGGACCATTCGGCGGTGGAGGGCGGGCAAGCGGCACAATGCCCATTTGAAGTCGAAGATATCTAAGCGTAGACTCAGACTACCTGCCCTTGTCCATCCTGCTTACGCTACAGTGATGAAGAAGCTCAATTTTTGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009008 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010426 GO:0016740 GO:0016741 GO:0032259 GO:0032776 GO:0033554 GO:0034605 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090116 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

174

Amino Acids

19.81

Weight (kDa)

12.0

Isoelectric Point (pI)

81.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	472
AccI	GTMKAC	1 cut(s)	451
AciI	CCGC	6 cut(s)	200, 256, 394, 404, 412, 516
AfiI	CCNNNNNNNGG	2 cut(s)	366, 393
AgsI	TTSAA	3 cut(s)	138, 251, 430
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	28, 505
AluI	AGCT	2 cut(s)	28, 505
Alw26I	GTCTC	1 cut(s)	43
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	153, 162, 384
AsuHPI	GGTGA	2 cut(s)	110, 174
AsuII	TTCGAA	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	153, 162, 384
BccI	CCATC	3 cut(s)	73, 374, 483
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	43
BfmI	CTRYAG	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	472
BisI	GCNGC	3 cut(s)	200, 257, 413
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	3 cut(s)	201, 258, 414
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	3 cut(s)	153, 162, 384
BmgT120I	GGNCC	3 cut(s)	153, 162, 384
BmiI	GGNNCC	2 cut(s)	164, 385
BmrFI	CCNGG	1 cut(s)	361
BoxI	GACNNNNGTC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	288
Bpu1102I	GCTNAGC	1 cut(s)	49
Bpu14I	TTCGAA	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 393
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	3 cut(s)	86, 171, 194
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	366, 393
BseMI	GCAATG	3 cut(s)	86, 171, 194
BseMII	CTCAG	2 cut(s)	63, 469
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	3 cut(s)	67, 96, 301
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	2 cut(s)	148, 397
BslI	CCNNNNNNNGG	2 cut(s)	366, 393
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	2 cut(s)	148, 397
BsmI	GAATGC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1720I	GCTNAGC	1 cut(s)	49
BspACI	CCGC	6 cut(s)	200, 256, 394, 404, 412, 516
BspCNI	CTCAG	2 cut(s)	62, 468
BspLI	GGNNCC	2 cut(s)	164, 385
BspMI	ACCTGC	1 cut(s)	472
BspQI	GCTCTTC	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	314
BsrDI	GCAATG	3 cut(s)	86, 171, 194
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	157, 493
Bst6I	CTCTTC	2 cut(s)	222, 278
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	204, 406, 410
BstDEI	CTNAG	3 cut(s)	49, 444, 455
BstF5I	GGATG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	263
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	489
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	204, 406, 410
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	3 cut(s)	153, 162, 384
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	6 cut(s)	28, 53, 206, 215, 295, 505
CviKI_1	RGCY	6 cut(s)	28, 53, 206, 215, 295, 505
DdeI	CTNAG	3 cut(s)	49, 444, 455
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	222, 278
EarI	CTCTTC	2 cut(s)	222, 278
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	153, 162, 384
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	441
FaeI	CATG	1 cut(s)	263
FaiI	YATR	1 cut(s)	261
FaqI	GGGAC	2 cut(s)	148, 397
FatI	CATG	1 cut(s)	259
FauI	CCCGC	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	200, 257, 413
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	200, 257, 413
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	200, 257, 413
GsuI	CTGGAG	1 cut(s)	288
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	301, 453
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	110, 174
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	157, 493
HpyCH4V	TGCA	2 cut(s)	10, 86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	49, 444, 455
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	8 cut(s)	96, 145, 216, 318, 346, 373, 477, 492
MaeIII	GTNAC	2 cut(s)	143, 307
MboII	GAAGA	4 cut(s)	209, 295, 448, 511
MluCI	AATT	2 cut(s)	138, 508
MlyI	GAGTC	2 cut(s)	295, 447
MnlI	CCTC	8 cut(s)	88, 114, 117, 132, 235, 264, 279, 393
MroNI	GCCGGC	1 cut(s)	202
MseI	TTAA	2 cut(s)	320, 520
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	212
NaeI	GCCGGC	1 cut(s)	204
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	2 cut(s)	164, 385
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	263
NspV	TTCGAA	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	222
PctI	GAATGC	1 cut(s)	230
PdiI	GCCGGC	1 cut(s)	204
PkrI	GCNGC	3 cut(s)	201, 258, 414
PleI	GAGTC	2 cut(s)	295, 447
PpsI	GAGTC	2 cut(s)	295, 447
PpuMI	RGGWCCY	1 cut(s)	162
PshAI	GACNNNNGTC	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	164, 385
PspPI	GGNCC	3 cut(s)	153, 162, 384
PspPPI	RGGWCCY	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	320, 520
SatI	GCNGC	3 cut(s)	200, 257, 413
Sau96I	GGNCC	3 cut(s)	153, 162, 384
SchI	GAGTC	2 cut(s)	295, 447
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	5 cut(s)	30, 164, 365, 466, 507
SfcI	CTRYAG	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	314
SinI	GGWCC	3 cut(s)	153, 162, 384
Sse9I	AATT	2 cut(s)	138, 508
SsiI	CCGC	6 cut(s)	200, 256, 394, 404, 412, 516
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	157, 493
TaqI	TCGA	3 cut(s)	269, 314, 434
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	138, 508
TauI	GCSGC	3 cut(s)	202, 259, 415
Tru1I	TTAA	2 cut(s)	320, 520
Tru9I	TTAA	2 cut(s)	320, 520
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	5 cut(s)	104, 160, 350, 389, 512
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	3 cut(s)	153, 162, 384
XceI	RCATGY	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.