Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Reverse (-)

49176763 .. 49183073

Gene Structure 6311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG309300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGAAGGAGAAACCGTTCAAGAGTATATTGAAATCGCTTGAGAAGCCGGACGGCGGCGAGTTCGGAATAAGCTACCGTACTCCATTAAGATCCTTCTTGAGTCTGCAATCTTTAACTGCCAAGAGTTTCAGGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGATGCTGGAGGGAGGGCAAGCGGCACAATGCATATCTGAAGAGATGGCCCAGGAGCTCGAAAGCGAAATTCGAGTGTGTGTTTAGTGAAGTTGGTGTTGTTAAAGAAGATGGGTTTTCGATGCCTGTGAACCCCAGCAGCCAAGAAACCTTGGGTCATTGTTTCATAGAGTTTAATTCTCCTCAGTCCTCAAGACAAATCAAGAAACTCAAGCTTTGTCAATTTGCCAAGAAACTGAGGGATAACTCCTGTCAAGTAGTTCCTGCTGAGACTGAGATTGAACAACAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

RRM_1 eIF2A

Protein Analysis

156

Amino Acids

17.95

Weight (kDa)

9.76

Isoelectric Point (pI)

69.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	57, 199
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	4 cut(s)	22, 34, 163, 458
AjnI	CCWGG	1 cut(s)	227
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	3 cut(s)	75, 234, 391
AluI	AGCT	3 cut(s)	75, 234, 391
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	3 cut(s)	161, 216, 281
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	58, 200, 316
BlsI	GCNGC	3 cut(s)	59, 201, 317
Bme1390I	CCNGG	2 cut(s)	148, 229
BmgT120I	GGNCC	1 cut(s)	225
BmrFI	CCNGG	2 cut(s)	148, 229
BmsI	GCATC	2 cut(s)	170, 288
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	4 cut(s)	62, 121, 352, 371
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	227, 327
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	227, 327
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	4 cut(s)	374, 404, 435, 441
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	327
BseYI	CCCAGC	1 cut(s)	311
BshFI	GGCC	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	50, 148
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	2 cut(s)	57, 199
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	4 cut(s)	373, 405, 436, 442
BspPI	GGATC	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	227, 327
BssMI	GATC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	18, 80
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	5 cut(s)	360, 413, 444, 450, 468
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	146, 227
BstV1I	GCAGC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	81
CviJI	RGCY	6 cut(s)	49, 75, 226, 234, 318, 391
CviKI_1	RGCY	6 cut(s)	49, 75, 226, 234, 318, 391
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	5 cut(s)	360, 413, 444, 450, 468
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	327
FaiI	YATR	3 cut(s)	29, 211, 344
FaqI	GGGAC	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	58, 200, 316
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	58, 200, 316
GluI	GCNGC	3 cut(s)	58, 200, 316
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	2 cut(s)	50, 148
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	50, 148
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	68, 216
Hpy188III	TCNNGA	4 cut(s)	22, 100, 369, 379
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	18, 80
HpyCH4V	TGCA	2 cut(s)	109, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	5 cut(s)	360, 413, 444, 450, 468
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	2 cut(s)	170, 288
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	2 cut(s)	229, 296
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	3 cut(s)	245, 352, 398
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	180, 184, 369, 376, 408
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	5 cut(s)	89, 116, 153, 279, 351
MspI	CCGG	2 cut(s)	50, 148
MspR9I	CCNGG	2 cut(s)	148, 229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	59, 201, 317
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	5 cut(s)	89, 116, 153, 279, 351
SatI	GCNGC	3 cut(s)	58, 200, 316
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	148, 229
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	5 cut(s)	77, 137, 236, 329, 393
SfaNI	GCATC	2 cut(s)	170, 288
SmlI	CTYRAG	4 cut(s)	41, 100, 367, 386
SmoI	CTYRAG	4 cut(s)	41, 100, 367, 386
Sse9I	AATT	3 cut(s)	245, 352, 398
SsiI	CCGC	2 cut(s)	57, 199
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	146, 227
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	18, 80
TaqI	TCGA	4 cut(s)	178, 236, 249, 296
TasI	AATT	3 cut(s)	245, 352, 398
TauI	GCSGC	2 cut(s)	60, 202
Tru1I	TTAA	5 cut(s)	89, 116, 153, 279, 351
Tru9I	TTAA	5 cut(s)	89, 116, 153, 279, 351
TseI	GCWGC	1 cut(s)	315
TspDTI	ATGAA	1 cut(s)	331
XapI	RAATTY	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.