Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Forward (+)

38639082 .. 38639351

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTTTTACCTTGGGGTTTGGAAAGTTGGTTTTGATGGCAAGTTTGGAAGGCCTTTATGGGCGTATGTGGTTTCGTGCGGGGACAACGAGTTCCGTCGGCGTGGATCCGGAAGCGGCCGGGCGATGGTGCGCCGTGAGGGTCTCGGGCCGGTGCATCGACCGTGGCTAGGATGGGCTCGGGGAGGTGTTGGCTTGGAGGAGATCGACGGCGTGGCTTGTGGTGCGGTTAGCTTCGTGGCGGGGCTCTTGGGCGGCGCGGGCTCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.52

Weight (kDa)

9.68

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	257
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	6 cut(s)	78, 114, 224, 239, 252, 257
AclWI	GGATC	2 cut(s)	99, 112
AcoI	YGGCCR	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	124, 167
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	99, 112
Ama87I	CYCGRG	2 cut(s)	143, 177
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	3 cut(s)	50, 115, 146
AspLEI	GCGC	2 cut(s)	132, 257
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	119
AvaI	CYCGRG	2 cut(s)	143, 177
BamHI	GGATCC	1 cut(s)	104
BanII	GRGCYC	3 cut(s)	178, 246, 263
BccI	CCATC	3 cut(s)	29, 118, 165
BceAI	ACGGC	2 cut(s)	117, 223
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	115, 253
BlsI	GCNGC	2 cut(s)	116, 254
Bme1390I	CCNGG	1 cut(s)	119
BmeT110I	CYCGRG	2 cut(s)	143, 177
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	10, 161
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 167
Bse118I	RCCGGY	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	10, 161
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	124, 167
BseRI	GAGGAG	1 cut(s)	212
BseX3I	CGGCCG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	257
Bsh1285I	CGRYCG	2 cut(s)	118, 161
BshFI	GGCC	3 cut(s)	52, 117, 148
BsiEI	CGRYCG	2 cut(s)	118, 161
BsiHKCI	CYCGRG	2 cut(s)	143, 177
BsiSI	CCGG	3 cut(s)	108, 118, 149
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	124, 167
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	52, 117, 148
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	2 cut(s)	143, 177
Bsp1286I	GDGCHC	3 cut(s)	178, 246, 263
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	104, 201
BspACI	CCGC	6 cut(s)	78, 114, 224, 239, 252, 257
BspANI	GGCC	3 cut(s)	52, 117, 148
BspEI	TCCGGA	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	2 cut(s)	99, 112
BspTNI	GGTCTC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	10, 161
BssMI	GATC	2 cut(s)	104, 201
BssT1I	CCWWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	176
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	132, 257
BstKTI	GATC	2 cut(s)	107, 204
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	104, 201
BstMCI	CGRYCG	2 cut(s)	118, 161
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 258
BstSCI	CCNGG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	3 cut(s)	52, 117, 148
BtgI	CCRYGG	1 cut(s)	161
BtgZI	GCGATG	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	259
CfoI	GCGC	2 cut(s)	132, 257
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	1 cut(s)	264
DpnI	GATC	2 cut(s)	106, 203
DpnII	GATC	2 cut(s)	104, 201
EaeI	YGGCCR	1 cut(s)	115
EagI	CGGCCG	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	10
Eco147I	AGGCCT	1 cut(s)	52
Eco24I	GRGCYC	3 cut(s)	178, 246, 263
Eco31I	GGTCTC	1 cut(s)	146
Eco52I	CGGCCG	1 cut(s)	115
Eco88I	CYCGRG	2 cut(s)	143, 177
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	3 cut(s)	178, 246, 263
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	1 cut(s)	267
FaiI	YATR	3 cut(s)	58, 66, 265
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	263
FauI	CCCGC	3 cut(s)	71, 232, 250
Fnu4HI	GCNGC	2 cut(s)	115, 253
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	3 cut(s)	178, 246, 263
Fsp4HI	GCNGC	2 cut(s)	115, 253
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	2 cut(s)	131, 256
GluI	GCNGC	2 cut(s)	115, 253
HaeIII	GGCC	3 cut(s)	52, 117, 148
HapII	CCGG	3 cut(s)	108, 118, 149
HhaI	GCGC	2 cut(s)	132, 257
Hin1II	CATG	1 cut(s)	267
Hin6I	GCGC	2 cut(s)	130, 255
HinP1I	GCGC	2 cut(s)	130, 255
HpaII	CCGG	3 cut(s)	108, 118, 149
Hpy188III	TCNNGA	1 cut(s)	108
Hpy99I	CGWCG	2 cut(s)	99, 209
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 258
Hsp92II	CATG	1 cut(s)	267
HspAI	GCGC	2 cut(s)	130, 255
Kpn2I	TCCGGA	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	104, 201
LpnPI	CCDG	3 cut(s)	121, 131, 162
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	167
MalI	GATC	2 cut(s)	106, 203
MboI	GATC	2 cut(s)	104, 201
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	3 cut(s)	178, 246, 263
MnlI	CCTC	3 cut(s)	130, 176, 190
MroI	TCCGGA	1 cut(s)	107
MspI	CCGG	3 cut(s)	108, 118, 149
MspR9I	CCNGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	221, 258
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	104, 201
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	116, 254
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	104
SatI	GCNGC	2 cut(s)	115, 253
Sau3AI	GATC	2 cut(s)	104, 201
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	3 cut(s)	178, 246, 263
SetI	ASST	3 cut(s)	12, 187, 233
SfaNI	GCATC	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	6 cut(s)	78, 114, 224, 239, 252, 257
SspMI	CTAG	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	157, 204
TauI	GCSGC	2 cut(s)	117, 255
TspGWI	ACGGA	1 cut(s)	83
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.