Rh6CG375100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003348
Physical Location & Seq
Reverse (-)
56118478 .. 56118741
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG375100.1

Sequence Viewer

Length: 264 bp
ATGGCAAGATCCGTCAGCGTGGATCTGGAAGCGGTTGGGCGACGGTGCGGCGTGTGGGTCTTGGGGCTGGTGCATCAACTGTGGCTCAGGGGGGGGGGGGCTCATGGAGGTGCTGGCTTGGAGGAGATCGGCGGAGTGGCTCGTGATGCTGTTGGCTTCGTGGAGGGGCTCTTGGGCGGCGCGGGCTCTTGGTGGGCTCGTGGTGACGGGACTCTTGGGCGGCGCTGCACAGACGCCTGCAGGCGTGGTGGAAGGGTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

8.99

Weight (kDa)

8.71

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 6 cut(s) 32, 48, 132, 177, 182, 220
AclWI GGATC 2 cut(s) 3, 30
AcyI GRCGYC 1 cut(s) 234
AlwI GGATC 2 cut(s) 3, 30
ApeKI GCWGC 1 cut(s) 225
AspLEI GCGC 2 cut(s) 182, 225
AsuHPI GGTGA 1 cut(s) 215
BanII GRGCYC 4 cut(s) 103, 171, 188, 199
BauI CACGAG 2 cut(s) 141, 198
BbvI GCAGC 1 cut(s) 212
BfaI CTAG 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 238
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 4 cut(s) 49, 178, 221, 226
BlsI GCNGC 4 cut(s) 50, 179, 222, 227
BmsI GCATC 2 cut(s) 82, 136
Bpu10I CCTNAGC 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 234
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 223
Bsp1286I GDGCHC 4 cut(s) 103, 171, 188, 199
Bsp143I GATC 3 cut(s) 8, 22, 126
BspACI CCGC 6 cut(s) 32, 48, 132, 177, 182, 220
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 242
BspPI GGATC 2 cut(s) 3, 30
BssMI GATC 3 cut(s) 8, 22, 126
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 2 cut(s) 141, 198
Bst2BI CACGAG 2 cut(s) 141, 198
Bst4CI ACNGT 2 cut(s) 45, 81
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 4 cut(s) 115, 184, 238, 242
BstDEI CTNAG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 182, 225
BstKTI GATC 3 cut(s) 11, 25, 129
BstMBI GATC 3 cut(s) 8, 22, 126
BstMWI GCNNNNNNNGC 2 cut(s) 146, 183
BstSFI CTRYAG 1 cut(s) 238
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 2 cut(s) 8, 22
BstYI RGATCY 2 cut(s) 8, 22
Cac8I GCNNGC 4 cut(s) 115, 184, 238, 242
CfoI GCGC 2 cut(s) 182, 225
CseI GACGC 1 cut(s) 242
CviAII CATG 1 cut(s) 104
CviJI RGCY 9 cut(s) 67, 85, 101, 117, 140, 156, 169, 186, 197
CviKI_1 RGCY 9 cut(s) 67, 85, 101, 117, 140, 156, 169, 186, 197
DdeI CTNAG 1 cut(s) 86
DpnI GATC 3 cut(s) 10, 24, 128
DpnII GATC 3 cut(s) 8, 22, 126
EciI GGCGGA 1 cut(s) 147
Eco24I GRGCYC 4 cut(s) 103, 171, 188, 199
EcoT38I GRGCYC 4 cut(s) 103, 171, 188, 199
FaeI CATG 1 cut(s) 107
FaiI YATR 1 cut(s) 105
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 103
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 49, 178, 221, 226
FriOI GRGCYC 4 cut(s) 103, 171, 188, 199
Fsp4HI GCNGC 4 cut(s) 49, 178, 221, 226
FspBI CTAG 1 cut(s) 262
GlaI GCGC 2 cut(s) 181, 224
GluI GCNGC 4 cut(s) 49, 178, 221, 226
HaeII RGCGCY 1 cut(s) 226
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 182, 225
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 2 cut(s) 180, 223
HinP1I GCGC 2 cut(s) 180, 223
HinfI GANTC 1 cut(s) 211
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 26, 143
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 2 cut(s) 45, 81
HpyCH4V TGCA 3 cut(s) 73, 228, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 183
HpyF3I CTNAG 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 2 cut(s) 180, 223
Kzo9I GATC 3 cut(s) 8, 22, 126
LpnPI CCDG 6 cut(s) 11, 53, 73, 99, 226, 250
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 2 cut(s) 82, 136
MaeI CTAG 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 203
MalI GATC 3 cut(s) 10, 24, 128
MboI GATC 3 cut(s) 8, 22, 126
MflI RGATCY 2 cut(s) 8, 22
MhlI GDGCHC 4 cut(s) 103, 171, 188, 199
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 3 cut(s) 101, 115, 157
MslI CAYNNNNRTG 1 cut(s) 108
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 146, 183
NdeII GATC 3 cut(s) 8, 22, 126
NlaIII CATG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 203
PkrI GCNGC 4 cut(s) 50, 179, 222, 227
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 242
PsuI RGATCY 2 cut(s) 8, 22
RseI CAYNNNNRTG 1 cut(s) 108
SatI GCNGC 4 cut(s) 49, 178, 221, 226
Sau3AI GATC 3 cut(s) 8, 22, 126
SbfI CCTGCAGG 1 cut(s) 242
SchI GAGTC 1 cut(s) 205
SdaI CCTGCAGG 1 cut(s) 242
SduI GDGCHC 4 cut(s) 103, 171, 188, 199
SetI ASST 1 cut(s) 112
SfaNI GCATC 2 cut(s) 82, 136
SfcI CTRYAG 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse8387I CCTGCAGG 1 cut(s) 242
SsiI CCGC 6 cut(s) 32, 48, 132, 177, 182, 220
SspMI CTAG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 45, 81
TauI GCSGC 3 cut(s) 51, 180, 223
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 203
XspI CTAG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.