RLG00000002859

Ribosomal protein L35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003348
Physical Location & Seq
Reverse (-)
40810801 .. 40817187
6387 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002859

Sequence Viewer

Length: 507 bp
ATGATGCAGCGATTATGCTCCAAGCTTCGCTCTTTATCCTTACAATCAGCCCACAAGACTCTACCATCTCTCTCCTCTTCCTCTTTCTTGCTTCGATCTTCTCGCCCTCTTCATTTCGCTTCAAATAGCAGCCACACATGGAGCTCAAGGTCCCTCTTCAATGCCCATTCACCAACCCAACCTTCACTGCTCCTCGCCTCTCTTCGCTCTTCAACATTTCCCATCTCAATGGTTCAAGTGCGGCATGTTTCGTCAAGCGAGCGTAAGAAGAGGAGAAAGCCAATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGACGCTGGAGGGAGGGCAAGCGGCACAATGCACATTTGAAGTCGAAGATATCCAAGCGTAGACTGAGACTACCTGCACTCGTCCATCCTGCTTATGCCAAAGTGATGAAGAAGCTCAATTTTTGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L35p

Protein Analysis

169

Amino Acids

19.3

Weight (kDa)

11.93

Isoelectric Point (pI)

70.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 105 - 164 1.8e-14 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 457
AccI GTMKAC 1 cut(s) 436
AciI CCGC 2 cut(s) 241, 397
AgsI TTSAA 6 cut(s) 123, 160, 213, 236, 361, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 3 cut(s) 25, 144, 490
AluI AGCT 3 cut(s) 25, 144, 490
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 7, 129
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 19, 141
BccI CCATC 4 cut(s) 73, 230, 359, 468
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 4 cut(s) 8, 130, 242, 398
BlsI GCNGC 4 cut(s) 9, 131, 243, 399
Bme1390I CCNGG 1 cut(s) 346
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 3 cut(s) 64, 182, 286
BseXI GCAGC 2 cut(s) 19, 141
BsgI GTGCAG 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 2 cut(s) 136, 328
BsmAI GTCTC 1 cut(s) 436
BsmFI GGGAC 2 cut(s) 136, 328
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 2 cut(s) 241, 397
BspCNI CTCAG 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 290
BssMI GATC 1 cut(s) 95
Bst6I CTCTTC 6 cut(s) 82, 114, 161, 207, 214, 263
BstC8I GCNNGC 2 cut(s) 260, 395
BstDEI CTNAG 1 cut(s) 440
BstF5I GGATG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 19, 141
BstXI CCANNNNNNTGG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 260, 395
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 387
CviAII CATG 2 cut(s) 138, 245
CviJI RGCY 6 cut(s) 25, 50, 132, 144, 280, 490
CviKI_1 RGCY 6 cut(s) 25, 50, 132, 144, 280, 490
DdeI CTNAG 1 cut(s) 440
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eam1104I CTCTTC 6 cut(s) 82, 114, 161, 207, 214, 263
EarI CTCTTC 6 cut(s) 82, 114, 161, 207, 214, 263
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 150
EcoRV GATATC 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 2 cut(s) 141, 248
FaiI YATR 4 cut(s) 16, 139, 246, 471
FaqI GGGAC 2 cut(s) 136, 328
FatI CATG 2 cut(s) 137, 244
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 4 cut(s) 8, 130, 242, 398
FokI GGATG 1 cut(s) 447
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 8, 130, 242, 398
GlaI GCGC 1 cut(s) 502
GluI GCNGC 4 cut(s) 8, 130, 242, 398
GsuI CTGGAG 1 cut(s) 403
HapII CCGG 1 cut(s) 346
HgaI GACGC 1 cut(s) 387
HhaI GCGC 1 cut(s) 503
Hin1II CATG 2 cut(s) 141, 248
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 346
HphI GGTGA 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 437
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 7, 407, 452
HpyF3I CTNAG 1 cut(s) 440
Hsp92II CATG 2 cut(s) 141, 248
HspAI GCGC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 95
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 3 cut(s) 23, 141, 195
LpnPI CCDG 5 cut(s) 303, 359, 367, 462, 477
Lsp1109I GCAGC 2 cut(s) 19, 141
MaeIII GTNAC 2 cut(s) 292, 326
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 9 cut(s) 69, 90, 101, 148, 194, 201, 280, 433, 496
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 1 cut(s) 493
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 9 cut(s) 85, 91, 117, 164, 203, 208, 264, 378, 382
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 1 cut(s) 346
NciI CCSGG 1 cut(s) 346
NdeII GATC 1 cut(s) 95
NlaIII CATG 2 cut(s) 141, 248
NlaIV GGNNCC 1 cut(s) 152
NspI RCATGY 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 9, 131, 243, 399
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 150
PspPPI RGGWCCY 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 8, 130, 242, 398
Sau3AI GATC 1 cut(s) 95
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 27, 146, 152, 184, 451, 492
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 1 cut(s) 493
SsiI CCGC 2 cut(s) 241, 397
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 344
TaqI TCGA 3 cut(s) 94, 376, 419
TasI AATT 1 cut(s) 493
TauI GCSGC 2 cut(s) 244, 400
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 192
TseI GCWGC 2 cut(s) 7, 129
TspDTI ATGAA 2 cut(s) 101, 497
TspRI CASTG 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 150
XceI RCATGY 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.