Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001355.1

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Forward (+)

17079 .. 21688

Gene Structure 4610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001355.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggaggggcgatgggagttgtcatcgcgggcggagaaaccgttcaagagtatattgaaatcgcttgagaagccggacggcggcgagttcggaaagtactacagcttgccagctctcaatgatcctagggtcgataagctaccatactctattaagatccttcttgagtctgcaatctataactgccatgagtcttacaagtcccgatttaagttattgaatgatggcactattcgatgctggagggagggcaagcggcacaatgcacatctgaagagatggcccaggagctcgaaagtgaaattcgagtgtttgtttagtgaagttggtgttattaaagaagatgggttttcgatgcatgtgaaccccagcagccaagaaaccctggggtctccttccttgcttagtcccgtaacagaggaagatgaagaacccgttcatagtgatgaaactagtgcacatgaccatgacgacataatgcagtggagtgagcaagaaatggatgatgatgtagaagaagaatatcatggtcatggtgcacaagaaatggaaacaataagaaatagcattactcaaagtttgatgaatgcgtgtaataacgcgaacatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017144 GO:0019752 GO:0030054 GO:0031667 GO:0042594 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048027 GO:0048046 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0072350 GO:0097159 GO:1901363 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

203

Amino Acids

23.3

Weight (kDa)

5.13

Isoelectric Point (pI)

64.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	28, 602
AciI	CCGC	4 cut(s)	28, 32, 81, 256
AclWI	GGATC	2 cut(s)	116, 151
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	46, 58, 220
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	2 cut(s)	284, 384
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	4 cut(s)	105, 113, 139, 291
AluI	AGCT	4 cut(s)	105, 113, 139, 291
Alw21I	GWGCWC	3 cut(s)	293, 460, 541
Alw26I	GTCTC	1 cut(s)	396
Alw44I	GTGCAC	2 cut(s)	456, 537
AlwI	GGATC	2 cut(s)	116, 151
AoxI	GGCC	1 cut(s)	281
ApaLI	GTGCAC	2 cut(s)	456, 537
ApeKI	GCWGC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	302
Asp700I	GAANNNNTTC	2 cut(s)	41, 435
AspA2I	CCTAGG	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	282
AvrII	CCTAGG	1 cut(s)	125
BaeGI	GKGCMC	2 cut(s)	460, 541
BanII	GRGCYC	1 cut(s)	293
Bbv12I	GWGCWC	3 cut(s)	293, 460, 541
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	4 cut(s)	6, 218, 273, 338
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	286, 386
BcoDI	GTCTC	1 cut(s)	396
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	2 cut(s)	126, 453
BfmI	CTRYAG	1 cut(s)	100
BisI	GCNGC	3 cut(s)	82, 257, 373
BlnI	CCTAGG	1 cut(s)	125
BlsI	GCNGC	3 cut(s)	83, 258, 374
BmcAI	AGTACT	1 cut(s)	98
Bme1390I	CCNGG	2 cut(s)	286, 386
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	286, 386
BmsI	GCATC	2 cut(s)	227, 345
BpmI	CTGGAG	1 cut(s)	262
BpuEI	CTTGAG	2 cut(s)	86, 185
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	125, 284, 384, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseBI	CCWGG	2 cut(s)	286, 386
BseDI	CCNNGG	4 cut(s)	125, 284, 384, 385
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseSI	GKGCMC	2 cut(s)	460, 541
BseXI	GCAGC	1 cut(s)	384
BseYI	CCCAGC	1 cut(s)	368
Bsh1236I	CGCG	2 cut(s)	28, 602
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	3 cut(s)	293, 460, 541
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	187, 393
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	2 cut(s)	187, 393
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	3 cut(s)	293, 460, 541
Bsp143I	GATC	2 cut(s)	121, 156
BspACI	CCGC	4 cut(s)	28, 32, 81, 256
BspANI	GGCC	1 cut(s)	283
BspFNI	CGCG	2 cut(s)	28, 602
BspPI	GGATC	2 cut(s)	116, 151
BspTNI	GGTCTC	1 cut(s)	396
BssECI	CCNNGG	4 cut(s)	125, 284, 384, 385
BssMI	GATC	2 cut(s)	121, 156
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	286, 386
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	269
BstC8I	GCNNGC	4 cut(s)	30, 107, 111, 254
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	2 cut(s)	28, 602
BstKTI	GATC	2 cut(s)	124, 159
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	121, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	2 cut(s)	286, 386
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	284, 384
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	2 cut(s)	460, 541
BstUI	CGCG	2 cut(s)	28, 602
BstV1I	GCAGC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	283
BtgZI	GCGATG	2 cut(s)	9, 25
BtsCI	GGATG	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	4 cut(s)	30, 107, 111, 254
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	6 cut(s)	188, 359, 461, 467, 527, 533
CviJI	RGCY	7 cut(s)	73, 105, 113, 139, 283, 291, 375
CviKI_1	RGCY	7 cut(s)	73, 105, 113, 139, 283, 291, 375
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	2 cut(s)	123, 158
DpnII	GATC	2 cut(s)	121, 156
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	284, 384
EcoT14I	CCWWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	6 cut(s)	191, 362, 464, 470, 530, 536
FaqI	GGGAC	2 cut(s)	187, 393
FatI	CATG	6 cut(s)	187, 358, 460, 466, 526, 532
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	82, 257, 373
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	82, 257, 373
FspBI	CTAG	2 cut(s)	126, 453
GluI	GCNGC	3 cut(s)	82, 257, 373
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	6 cut(s)	191, 362, 464, 470, 530, 536
HinfI	GANTC	2 cut(s)	167, 191
HpaII	CCGG	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	364, 458, 539
Hpy188I	TCNGA	2 cut(s)	92, 273
Hpy188III	TCNNGA	3 cut(s)	46, 164, 204
Hpy8I	GTNNAC	3 cut(s)	364, 458, 539
HpyAV	CCTTC	2 cut(s)	170, 405
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	6 cut(s)	173, 266, 358, 458, 481, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	404
Hsp92II	CATG	6 cut(s)	191, 362, 464, 470, 530, 536
Kzo9I	GATC	2 cut(s)	121, 156
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	8 cut(s)	87, 123, 226, 271, 298, 371, 382, 398
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	2 cut(s)	227, 345
MaeI	CTAG	2 cut(s)	126, 453
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	123, 158
MboI	GATC	2 cut(s)	121, 156
MboII	GAAGA	6 cut(s)	286, 353, 434, 440, 527, 530
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	3 cut(s)	293, 460, 541
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	176, 200
MnlI	CCTC	3 cut(s)	237, 241, 412
Mph1103I	ATGCAT	1 cut(s)	360
MroXI	GAANNNNTTC	2 cut(s)	41, 435
MseI	TTAA	3 cut(s)	153, 210, 336
MslI	CAYNNNNRTG	3 cut(s)	444, 465, 531
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	286, 386
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	2 cut(s)	286, 386
MvnI	CGCG	2 cut(s)	28, 602
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	2 cut(s)	121, 156
NlaIII	CATG	6 cut(s)	191, 362, 464, 470, 530, 536
NsiI	ATGCAT	1 cut(s)	360
NspI	RCATGY	1 cut(s)	362
PasI	CCCWGGG	1 cut(s)	385
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	2 cut(s)	41, 435
PkrI	GCNGC	3 cut(s)	83, 258, 374
PleI	GAGTC	2 cut(s)	175, 199
PpsI	GAGTC	2 cut(s)	175, 199
Psp124BI	GAGCTC	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	284, 384
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	2 cut(s)	284, 384
PspPI	GGNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	3 cut(s)	444, 465, 531
SacI	GAGCTC	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	153, 210, 336
SatI	GCNGC	3 cut(s)	82, 257, 373
Sau3AI	GATC	2 cut(s)	121, 156
Sau96I	GGNCC	1 cut(s)	282
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	2 cut(s)	176, 200
ScrFI	CCNGG	2 cut(s)	286, 386
SduI	GDGCHC	3 cut(s)	293, 460, 541
SetI	ASST	4 cut(s)	107, 115, 141, 293
SfaNI	GCATC	2 cut(s)	227, 345
SfcI	CTRYAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	3 cut(s)	444, 465, 531
SmlI	CTYRAG	2 cut(s)	65, 164
SmoI	CTYRAG	2 cut(s)	65, 164
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	4 cut(s)	28, 32, 81, 256
SspMI	CTAG	2 cut(s)	126, 453
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	284, 384
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	5 cut(s)	132, 235, 293, 306, 353
TasI	AATT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	2 cut(s)	84, 259
Tru1I	TTAA	3 cut(s)	153, 210, 336
Tru9I	TTAA	3 cut(s)	153, 210, 336
TscAI	CASTG	1 cut(s)	488
TseI	GCWGC	1 cut(s)	372
TspDTI	ATGAA	4 cut(s)	428, 441, 462, 599
TspRI	CASTG	1 cut(s)	488
VneI	GTGCAC	2 cut(s)	456, 537
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	362
XmaJI	CCTAGG	1 cut(s)	125
XmnI	GAANNNNTTC	2 cut(s)	41, 435
XspI	CTAG	2 cut(s)	126, 453
ZrmI	AGTACT	1 cut(s)	98
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.