Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Forward (+)

68021777 .. 68022103

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG475900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGGCGGCGTGTGGGTCTTGGGGCTGGTGCATCGACTGTGGCTCGCGGGGCTCGGGGATGTGCTGGCTTGGTGGAGATCAGCGGCGTGGCTCGTGGTGCGGTTGGCATTGTGGCGGGGCTTGGGCGGCGCGGGTTCGTGGTGACGGGACCCTTGGGTAGAGCTGCACAGGCGGCTGCAGGTGTGGTGGACGGGTGGACTGGACTTGGGTCAACCCTGGCTTGCTGGATCTTGAGATGGGCTCTTCTCTTTGGGGCTGCCCTATTGGGCCTGTTATTTAGGTTAGGGTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

9.66

Weight (kDa)

12.0

Isoelectric Point (pI)

23.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	170
AccII	CGCG	2 cut(s)	48, 132
AciI	CCGC	8 cut(s)	7, 48, 84, 101, 116, 127, 132, 173
AclWI	GGATC	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	3 cut(s)	164, 176, 257
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	149, 268
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	55, 244
BauI	CACGAG	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	151, 163, 244
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	7 cut(s)	8, 85, 128, 165, 174, 177, 258
BlsI	GCNGC	7 cut(s)	9, 86, 129, 166, 175, 178, 259
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	149, 268
BmiI	GGNNCC	2 cut(s)	150, 151
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	41
BoxI	GACNNNNGTC	1 cut(s)	208
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	153, 216
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	153, 216
BseGI	GGATG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	151, 163, 244
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	48, 132
BshFI	GGCC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	55, 244
Bsp143I	GATC	2 cut(s)	78, 228
BspACI	CCGC	8 cut(s)	7, 48, 84, 101, 116, 127, 132, 173
BspANI	GGCC	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	48, 132
BspLI	GGNNCC	2 cut(s)	150, 151
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	153, 216
BssMI	GATC	2 cut(s)	78, 228
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	46, 67, 223
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	2 cut(s)	48, 132
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	81, 231
BstMBI	GATC	2 cut(s)	78, 228
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 98, 127, 170, 173
BstNI	CCWGG	1 cut(s)	218
BstPAI	GACNNNNGTC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	2 cut(s)	48, 132
BstV1I	GCAGC	3 cut(s)	151, 163, 244
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	3 cut(s)	46, 67, 223
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	149, 268
DpnI	GATC	2 cut(s)	80, 230
DpnII	GATC	2 cut(s)	78, 228
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	55, 244
Eco47I	GGWCC	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	2 cut(s)	55, 244
ErhI	CCWWGG	1 cut(s)	153
FaqI	GGGAC	1 cut(s)	162
FauI	CCCGC	3 cut(s)	41, 109, 125
Fnu4HI	GCNGC	7 cut(s)	8, 85, 128, 165, 174, 177, 258
FokI	GGATG	1 cut(s)	72
FriOI	GRGCYC	2 cut(s)	55, 244
Fsp4HI	GCNGC	7 cut(s)	8, 85, 128, 165, 174, 177, 258
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	7 cut(s)	8, 85, 128, 165, 174, 177, 258
HaeIII	GGCC	1 cut(s)	270
HhaI	GCGC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	190, 198, 213
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	3 cut(s)	190, 198, 213
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	32, 167, 179
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 98, 127, 170, 173
HspAI	GCGC	1 cut(s)	130
KflI	GGGWCCC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	78, 228
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	9 cut(s)	12, 51, 155, 165, 186, 203, 211, 230, 284
Lsp1109I	GCAGC	3 cut(s)	151, 163, 244
LweI	GCATC	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	80, 230
MboI	GATC	2 cut(s)	78, 228
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	2 cut(s)	55, 244
MspA1I	CMGCKG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	2 cut(s)	48, 132
MwoI	GCNNNNNNNGC	5 cut(s)	50, 98, 127, 170, 173
NdeII	GATC	2 cut(s)	78, 228
NlaIV	GGNNCC	2 cut(s)	150, 151
NmuCI	GTSAC	1 cut(s)	142
PaqCI	CACCTGC	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	249
PkrI	GCNGC	7 cut(s)	9, 86, 129, 166, 175, 178, 259
PpuMI	RGGWCCY	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	150, 151
PspPI	GGNCC	2 cut(s)	149, 268
PspPPI	RGGWCCY	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	249
SatI	GCNGC	7 cut(s)	8, 85, 128, 165, 174, 177, 258
Sau3AI	GATC	2 cut(s)	78, 228
Sau96I	GGNCC	2 cut(s)	149, 268
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	2 cut(s)	55, 244
SetI	ASST	3 cut(s)	166, 184, 284
SfaNI	GCATC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SsiI	CCGC	8 cut(s)	7, 48, 84, 101, 116, 127, 132, 173
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	35
TauI	GCSGC	4 cut(s)	10, 87, 130, 176
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	164, 176, 257
Tsp45I	GTSAC	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.