Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Reverse (-)

65784280 .. 65785733

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG449100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGACGCTGGAGGGAGGGCAAGTGGCACAATGCACATCTGAAGCAGCTGCATGTGACAAAATCAAATGATGAGCAGCAATGTAAGGCTCAGTTTGTGAAATCCCAGCTGTGCAATTTCCATAAGCTTTGGAGCACCGTGCCGGAGGATTCATCCCATTGTTATGGCAGAGCAACCACCACTCCAGGCTCATTGAATGTCATCCGGTTCTTCACTTTCCCAAGTGATGGTGTCTCGGCAATAATAACTAATAAGCTACCTCCCGGATTGTTTCAATACCGCAATGTTCGGACTGCAAAAATTGGCAAAGTTGGAATCTGCCAACCCATTTGCTGTGCACAATTCGGAGAGAGTGTTTTGAGACTTGATGACGAATTCACGGAGGTTAACAGAGTTCAACTGTCGACTAATAAGCTAAACAGGGATGCAGCAGTTGATGTATTAGGGAGGGTGGAGAGGGATGTGGTAGTCGGAAATCATTTTGGGGAGCTAATGGGAGCAATGGCTTGTTCTTGGGAGAGTAGGGAGGGTGGTCTTGTTTCTGCAACTCAGTTTGGGTTTTCAAGAACTTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L35p

Protein Analysis

222

Amino Acids

25.01

Weight (kDa)

9.55

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	494
AciI	CCGC	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	5 cut(s)	79, 286, 365, 488, 654
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	6 cut(s)	139, 199, 217, 346, 505, 580
AluI	AGCT	6 cut(s)	139, 199, 217, 346, 505, 580
Alw21I	GWGCWC	2 cut(s)	227, 430
Alw26I	GTCTC	2 cut(s)	328, 445
Alw44I	GTGCAC	1 cut(s)	426
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	4 cut(s)	136, 139, 166, 518
ApoI	RAATTY	1 cut(s)	464
AsuC2I	CCSGG	2 cut(s)	64, 354
BaeGI	GKGCMC	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	227, 430
BbvI	GCAGC	4 cut(s)	126, 148, 178, 530
BccI	CCATC	2 cut(s)	77, 311
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	2 cut(s)	64, 354
BcoDI	GTCTC	2 cut(s)	328, 445
BisI	GCNGC	4 cut(s)	137, 140, 167, 519
BlsI	GCNGC	4 cut(s)	138, 141, 168, 520
Bme1390I	CCNGG	3 cut(s)	64, 276, 354
BmrFI	CCNGG	3 cut(s)	64, 276, 354
BmsI	GCATC	1 cut(s)	505
BpmI	CTGGAG	2 cut(s)	121, 258
BpuMI	CCSGG	2 cut(s)	64, 354
BsaWI	WCCGGW	1 cut(s)	294
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 128, 256, 286, 429, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	8
Bse3DI	GCAATG	3 cut(s)	176, 379, 597
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	4 cut(s)	242, 291, 520, 556
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	3 cut(s)	176, 379, 597
BseMII	CTCAG	2 cut(s)	194, 653
BseNI	ACTGG	1 cut(s)	8
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	4 cut(s)	126, 148, 178, 530
BseYI	CCCAGC	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	227, 430
BsiSI	CCGG	4 cut(s)	64, 233, 295, 354
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	2 cut(s)	328, 445
BsmFI	GGGAC	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	227, 430
BspACI	CCGC	1 cut(s)	370
BspCNI	CTCAG	2 cut(s)	193, 652
BsrDI	GCAATG	3 cut(s)	176, 379, 597
BsrI	ACTGG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	229, 492
BstDEI	CTNAG	2 cut(s)	180, 639
BstF5I	GGATG	4 cut(s)	242, 291, 520, 556
BstMAI	GTCTC	2 cut(s)	328, 445
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	3 cut(s)	62, 274, 352
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	4 cut(s)	126, 148, 178, 530
BstXI	CCANNNNNNTGG	1 cut(s)	254
BtsCI	GGATG	4 cut(s)	242, 291, 520, 556
CseI	GACGC	1 cut(s)	105
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	9 cut(s)	139, 179, 199, 217, 279, 346, 505, 580, 596
CviKI_1	RGCY	9 cut(s)	139, 179, 199, 217, 279, 346, 505, 580, 596
DdeI	CTNAG	2 cut(s)	180, 639
Eco57I	CTGAAG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	274
FaeI	CATG	1 cut(s)	146
FaiI	YATR	3 cut(s)	144, 213, 255
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	4 cut(s)	137, 140, 167, 519
FokI	GGATG	4 cut(s)	229, 278, 527, 563
Fsp4HI	GCNGC	4 cut(s)	137, 140, 167, 519
GluI	GCNGC	4 cut(s)	137, 140, 167, 519
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	2 cut(s)	121, 258
HapII	CCGG	4 cut(s)	64, 233, 295, 354
HgaI	GACGC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	146
HincII	GTYRAC	2 cut(s)	478, 495
HindII	GTYRAC	2 cut(s)	478, 495
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	239, 405
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	4 cut(s)	64, 233, 295, 354
Hpy166II	GTNNAC	3 cut(s)	428, 478, 495
Hpy188I	TCNGA	4 cut(s)	132, 381, 437, 563
Hpy188III	TCNNGA	1 cut(s)	654
Hpy8I	GTNNAC	3 cut(s)	428, 478, 495
Hpy99I	CGWCG	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	229, 492
HpyCH4V	TGCA	7 cut(s)	125, 142, 204, 386, 428, 518, 635
HpyF3I	CTNAG	2 cut(s)	180, 639
Hsp92II	CATG	1 cut(s)	146
KspAI	GTTAAC	1 cut(s)	478
LmnI	GCTCC	3 cut(s)	222, 577, 587
Lsp1109I	GCAGC	4 cut(s)	126, 148, 178, 530
LweI	GCATC	1 cut(s)	505
MaeIII	GTNAC	3 cut(s)	10, 44, 145
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	227, 430
MluCI	AATT	5 cut(s)	205, 390, 431, 464, 664
MmeI	TCCRAC	2 cut(s)	382, 541
MnlI	CCTC	8 cut(s)	96, 100, 229, 360, 466, 531, 540, 610
MseI	TTAA	2 cut(s)	69, 477
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	139, 199
MspI	CCGG	4 cut(s)	64, 233, 295, 354
MspR9I	CCNGG	3 cut(s)	64, 276, 354
MvaI	CCWGG	1 cut(s)	276
NciI	CCSGG	2 cut(s)	64, 354
NlaIII	CATG	1 cut(s)	146
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	239, 405
PflMI	CCANNNNNTGG	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	4 cut(s)	138, 141, 168, 520
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	274
PvuII	CAGCTG	2 cut(s)	139, 199
RseI	CAYNNNNRTG	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	493
SaqAI	TTAA	2 cut(s)	69, 477
SatI	GCNGC	4 cut(s)	137, 140, 167, 519
ScrFI	CCNGG	3 cut(s)	64, 276, 354
SduI	GDGCHC	2 cut(s)	227, 430
SetI	ASST	8 cut(s)	141, 201, 219, 348, 352, 477, 507, 582
SfaNI	GCATC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	5 cut(s)	205, 390, 431, 464, 664
SsiI	CCGC	1 cut(s)	370
StyD4I	CCNGG	3 cut(s)	62, 274, 352
TaaI	ACNGT	2 cut(s)	229, 492
TaqI	TCGA	2 cut(s)	94, 494
TasI	AATT	5 cut(s)	205, 390, 431, 464, 664
TfiI	GAWTC	2 cut(s)	239, 405
Tru1I	TTAA	2 cut(s)	69, 477
Tru9I	TTAA	2 cut(s)	69, 477
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	4 cut(s)	136, 139, 166, 518
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	485
Van91I	CCANNNNNTGG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	426
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.