Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003348

Physical Location & Seq

Genomic Coordinates Forward (+)

10848064 .. 10850158

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0137400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGTAATTATTCCAAGTACTTCATAGCCATGTTCTATGTATTCATAAGGATGATGATACTGTTATTAGAGCCAAAGAAGAACCAAATGGTGAATGCAGCGGATATGAACAATACAACTGTCGCGGTGCTTCATTTTTGTGCTACAGGTTCAACTCCTCTTCACGAACCCTATAATGATATCCGGAAATTCATCTGTTCATCGCTTGATTGGCACGGCTACAGTATCGCTCTCCGGAAAGATGAACATGATGTTGTTACAATAGTACTATCGGGTATGTATGAAATGAACTGGATTGGAGTTGGAGTATCGCGAGATGGGAAAATGGAGGGTGCGAGTGCTGTGGTGGGATGGCTGCGAGGCAAAGACAGCAACTCCAGCGTTATAAAGCAGTACTTTTTGCAGGGTCCGTCGAGTGATCAATTCATTCCAGATAAAGGTGATCTGGAATTCGGTAAAGCTGCTCCTACAATGCTTCTTCAAGACACAACCATTTACCTGGCATTTCAACTTCAATTTGCAAACGGTATTACTCGTCAACCTTTTATATTTGCTGCTGGAATAGGAAAGCCTGGTGACAACAACATCCTACCAAAGCACGCCTTTAATACCTCCATGACAGTTGATTTCTCTAAAGGTACTTTCACTCTTGGTTATGTAGACATCAGCAAAGTGAAGCTGAACCATGGAATTCTGGCTATAGTTGGATGGGGCATATTCATTCCATTAGGAGTAGCATTGGCCAGGTACCTTAGGGATCTTGAACCTTTGTGGTACTATCTTCATTCATCAGTTCAGTTTGTGGGATTCTTTGTTGGCCTTGCTGCTGTGGCTGTTGGGAAGTCATTATACGATCGTATAGATGCCGACTTTTTATACCACAGAGCCATCGGCTACACCGTGCTTTCTCTTAGTGTTCTTGAGGTGTGCCAATTCGTCATGAGGCCGTCGAGTAGTTCCAATGTTCGGCACTACTGGAATCTGGCTCATTATTGGGTGGGGAGAATTACAATCTTGCTCGGACCCGTCAACATTCTCATTGGACTCTATTGTGGAAATGGAGGTGAAAAGTTAAAGATTACATATTTATGTGTTCTTGTTTTCTTTGTTGTGGCTGCACTCCTCTTAGAAATACGGCTGCTGATGAAGAGGAAAAGAGAAGCAACTACCAATTTGACCAAGACTCCTGTTTTTCAAGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L35p

Protein Analysis

401

Amino Acids

44.9

Weight (kDa)

8.99

Isoelectric Point (pI)

23.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45590
fragaria_vesca	FvH4_5g23590 FvH4_5g23590 FvH4_5g23590
malus_domestica	MD00G1000200.v1.1 MD06G1023100.v1.1
prunus_persica	Prupe.5G024300_v2.0.a1
pyrus_communis	pycom06g01870 pycom16g25360
rosa_chinensis	RchiOBHm_Chr1g0382651 RchiOBHm_Chr7g0212891
rosa_laevigata	RLG00000000943 RLG00000002859 RLG00000034251
rosa_multiflora	Rmu_sc0001355.1_g000007 Rmu_sc0006862.1_g000004
rosa_roxburghii	Rroxscaffold_3G00246450 Rroxscaffold_6G00416720 Rroxscaffold_7G00181750
rosa_rugosa	Rorug07G0137300 Rorug07G0137400
rosa_samantha	Rh1BG416900 Rh1DG449100 Rh6CG309300 Rh6CG309400 Rh6CG310300 Rh6CG375100 Rh6DG293900 Rh7AG269000 Rh7BG264600 Rh7CG288200 Rh7DG277200 Rh7DG475900
rosa_wichuraiana	Rw1G041140 Rw7G023370 Rw7G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
Acc65I	GGTACC	1 cut(s)	747
AccB1I	GGYRCC	1 cut(s)	747
AccI	GTMKAC	1 cut(s)	660
AccII	CGCG	2 cut(s)	125, 313
AccIII	TCCGGA	2 cut(s)	183, 234
AciI	CCGC	2 cut(s)	101, 125
AclWI	GGATC	1 cut(s)	765
AcoI	YGGCCR	1 cut(s)	741
AcsI	RAATTY	3 cut(s)	188, 449, 690
AfaI	GTAC	6 cut(s)	20, 267, 395, 640, 749, 776
AfiI	CCNNNNNNNGG	2 cut(s)	437, 966
AgsI	TTSAA	6 cut(s)	153, 482, 509, 515, 764, 1196
AjnI	CCWGG	3 cut(s)	498, 571, 743
AluBI	AGCT	2 cut(s)	461, 679
AluI	AGCT	2 cut(s)	461, 679
AlwI	GGATC	1 cut(s)	765
Aor13HI	TCCGGA	2 cut(s)	183, 234
AoxI	GGCC	3 cut(s)	741, 817, 944
ApeKI	GCWGC	7 cut(s)	98, 355, 461, 554, 824, 1115, 1138
ApoI	RAATTY	3 cut(s)	188, 449, 690
Asp718I	GGTACC	1 cut(s)	747
AspS9I	GGNCC	2 cut(s)	407, 1022
AsuHPI	GGTGA	4 cut(s)	103, 452, 587, 1076
AvaII	GGWCC	2 cut(s)	407, 1022
AxyI	CCTNAGG	1 cut(s)	752
BalI	TGGCCA	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	747
BarI	GAAGNNNNNNTAC	2 cut(s)	833, 865
BbvI	GCAGC	7 cut(s)	110, 342, 448, 541, 811, 1102, 1125
BccI	CCATC	4 cut(s)	311, 345, 702, 896
BceAI	ACGGC	3 cut(s)	232, 931, 1151
BciT130I	CCWGG	3 cut(s)	500, 573, 745
BclI	TGATCA	1 cut(s)	418
BfmI	CTRYAG	3 cut(s)	144, 220, 699
BisI	GCNGC	7 cut(s)	99, 356, 462, 555, 825, 1116, 1139
BlsI	GCNGC	7 cut(s)	100, 357, 463, 556, 826, 1117, 1140
BmcAI	AGTACT	3 cut(s)	20, 267, 395
Bme1390I	CCNGG	3 cut(s)	500, 573, 745
Bme18I	GGWCC	2 cut(s)	407, 1022
BmgT120I	GGNCC	2 cut(s)	407, 1022
BmiI	GGNNCC	3 cut(s)	408, 749, 1024
BmrFI	CCNGG	3 cut(s)	500, 573, 745
BmsI	GCATC	1 cut(s)	853
BpmI	CTGGAG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	941
BsaJI	CCNNGG	1 cut(s)	685
BsaWI	WCCGGW	2 cut(s)	183, 234
BsaXI	ACNNNNNCTCC	6 cut(s)	291, 321, 359, 389, 1168, 1198
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 966
Bse1I	ACTGG	2 cut(s)	296, 980
Bse21I	CCTNAGG	1 cut(s)	752
BseAI	TCCGGA	2 cut(s)	183, 234
BseBI	CCWGG	3 cut(s)	500, 573, 745
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	4 cut(s)	57, 356, 585, 713
BseLI	CCNNNNNNNGG	2 cut(s)	437, 966
BseNI	ACTGG	2 cut(s)	296, 980
BseRI	GAGGAG	2 cut(s)	147, 1112
BseXI	GCAGC	7 cut(s)	110, 342, 448, 541, 811, 1102, 1125
BsgI	GTGCAG	1 cut(s)	1101
Bsh1236I	CGCG	2 cut(s)	125, 313
Bsh1285I	CGRYCG	1 cut(s)	856
BshFI	GGCC	3 cut(s)	743, 819, 946
BshNI	GGYRCC	1 cut(s)	747
BsiEI	CGRYCG	1 cut(s)	856
BsiSI	CCGG	2 cut(s)	184, 235
BslI	CCNNNNNNNGG	2 cut(s)	437, 966
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	743, 819, 946
Bsp13I	TCCGGA	2 cut(s)	183, 234
Bsp143I	GATC	4 cut(s)	418, 442, 757, 853
Bsp19I	CCATGG	1 cut(s)	685
Bsp68I	TCGCGA	1 cut(s)	313
BspACI	CCGC	2 cut(s)	101, 125
BspANI	GGCC	3 cut(s)	743, 819, 946
BspEI	TCCGGA	2 cut(s)	183, 234
BspFNI	CGCG	2 cut(s)	125, 313
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	3 cut(s)	408, 749, 1024
BspPI	GGATC	1 cut(s)	765
BspT107I	GGYRCC	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	296, 980
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	4 cut(s)	418, 442, 757, 853
BssT1I	CCWWGG	1 cut(s)	685
Bst2UI	CCWGG	3 cut(s)	500, 573, 745
Bst4CI	ACNGT	6 cut(s)	63, 121, 224, 527, 622, 901
Bst6I	CTCTTC	2 cut(s)	165, 1142
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	752, 911, 1126
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	4 cut(s)	57, 356, 585, 713
BstFNI	CGCG	2 cut(s)	125, 313
BstKTI	GATC	4 cut(s)	421, 445, 760, 856
BstMBI	GATC	4 cut(s)	418, 442, 757, 853
BstMCI	CGRYCG	1 cut(s)	856
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 369, 378, 830
BstNI	CCWGG	3 cut(s)	500, 573, 745
BstSCI	CCNGG	3 cut(s)	498, 571, 743
BstSFI	CTRYAG	3 cut(s)	144, 220, 699
BstUI	CGCG	2 cut(s)	125, 313
BstV1I	GCAGC	7 cut(s)	110, 342, 448, 541, 811, 1102, 1125
BstX2I	RGATCY	1 cut(s)	757
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	757
Bsu36I	CCTNAGG	1 cut(s)	752
BsuRI	GGCC	3 cut(s)	743, 819, 946
BtgI	CCRYGG	1 cut(s)	685
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	4 cut(s)	57, 356, 585, 713
BtuMI	TCGCGA	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	1 cut(s)	939
Cfr13I	GGNCC	2 cut(s)	407, 1022
Csp6I	GTAC	6 cut(s)	19, 266, 394, 639, 748, 775
CviAII	CATG	5 cut(s)	31, 248, 616, 686, 940
CviQI	GTAC	6 cut(s)	19, 266, 394, 639, 748, 775
DdeI	CTNAG	3 cut(s)	752, 911, 1126
DpnI	GATC	4 cut(s)	420, 444, 759, 855
DpnII	GATC	4 cut(s)	418, 442, 757, 853
EaeI	YGGCCR	1 cut(s)	741
Eam1104I	CTCTTC	2 cut(s)	165, 1142
EarI	CTCTTC	2 cut(s)	165, 1142
Eco130I	CCWWGG	1 cut(s)	685
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	407, 1022
Eco81I	CCTNAGG	1 cut(s)	752
EcoRI	GAATTC	2 cut(s)	449, 690
EcoRII	CCWGG	3 cut(s)	498, 571, 743
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	5 cut(s)	34, 251, 619, 689, 943
FalI	AAGNNNNNCTT	4 cut(s)	380, 412, 587, 619
FatI	CATG	5 cut(s)	30, 247, 615, 685, 939
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	660
Fnu4HI	GCNGC	7 cut(s)	99, 356, 462, 555, 825, 1116, 1139
FokI	GGATG	4 cut(s)	64, 363, 572, 720
Fsp4HI	GCNGC	7 cut(s)	99, 356, 462, 555, 825, 1116, 1139
GluI	GCNGC	7 cut(s)	99, 356, 462, 555, 825, 1116, 1139
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	3 cut(s)	743, 819, 946
HapII	CCGG	2 cut(s)	184, 235
Hin1II	CATG	5 cut(s)	34, 251, 619, 689, 943
HincII	GTYRAC	2 cut(s)	539, 1030
HindII	GTYRAC	2 cut(s)	539, 1030
HinfI	GANTC	4 cut(s)	807, 979, 1044, 1183
HpaII	CCGG	2 cut(s)	184, 235
HphI	GGTGA	4 cut(s)	103, 452, 587, 1076
Hpy166II	GTNNAC	3 cut(s)	539, 661, 1030
Hpy188I	TCNGA	1 cut(s)	1022
Hpy8I	GTNNAC	3 cut(s)	539, 661, 1030
Hpy99I	CGWCG	2 cut(s)	415, 952
HpyCH4III	ACNGT	6 cut(s)	63, 121, 224, 527, 622, 901
HpyCH4V	TGCA	4 cut(s)	98, 403, 521, 1118
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 369, 378, 830
HpyF3I	CTNAG	3 cut(s)	752, 911, 1126
Hsp92II	CATG	5 cut(s)	34, 251, 619, 689, 943
Kpn2I	TCCGGA	2 cut(s)	183, 234
KpnI	GGTACC	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	418, 442, 757, 853
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	7 cut(s)	110, 342, 448, 541, 811, 1102, 1125
LweI	GCATC	1 cut(s)	853
MaeIII	GTNAC	2 cut(s)	256, 575
MalI	GATC	4 cut(s)	420, 444, 759, 855
MboI	GATC	4 cut(s)	418, 442, 757, 853
MboII	GAAGA	5 cut(s)	91, 152, 470, 773, 1159
MflI	RGATCY	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	743
MluCI	AATT	9 cut(s)	7, 188, 422, 449, 515, 690, 932, 1005, 1171
MluNI	TGGCCA	1 cut(s)	743
MlyI	GAGTC	2 cut(s)	1038, 1177
MmeI	TCCRAC	2 cut(s)	283, 685
MnlI	CCTC	9 cut(s)	168, 322, 353, 622, 916, 936, 1055, 1133, 1143
Mox20I	TGGCCA	1 cut(s)	743
MroI	TCCGGA	2 cut(s)	183, 234
MscI	TGGCCA	1 cut(s)	743
MseI	TTAA	3 cut(s)	606, 1073, 1204
MslI	CAYNNNNRTG	4 cut(s)	29, 50, 138, 1087
Msp20I	TGGCCA	1 cut(s)	743
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	184, 235
MspR9I	CCNGG	3 cut(s)	500, 573, 745
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	3 cut(s)	500, 573, 745
MvnI	CGCG	2 cut(s)	125, 313
MwoI	GCNNNNNNNGC	4 cut(s)	211, 369, 378, 830
NcoI	CCATGG	1 cut(s)	685
NdeII	GATC	4 cut(s)	418, 442, 757, 853
NlaIII	CATG	5 cut(s)	34, 251, 619, 689, 943
NlaIV	GGNNCC	3 cut(s)	408, 749, 1024
NmuCI	GTSAC	1 cut(s)	575
NruI	TCGCGA	1 cut(s)	313
PagI	TCATGA	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	1 cut(s)	897
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	807, 979
PkrI	GCNGC	7 cut(s)	100, 357, 463, 556, 826, 1117, 1140
Ple19I	CGATCG	1 cut(s)	856
PleI	GAGTC	2 cut(s)	1038, 1177
PpsI	GAGTC	2 cut(s)	1038, 1177
PsiI	TTATAA	1 cut(s)	386
Psp6I	CCWGG	3 cut(s)	498, 571, 743
PspGI	CCWGG	3 cut(s)	498, 571, 743
PspN4I	GGNNCC	3 cut(s)	408, 749, 1024
PspPI	GGNCC	2 cut(s)	407, 1022
PsuI	RGATCY	1 cut(s)	757
PvuI	CGATCG	1 cut(s)	856
RruI	TCGCGA	1 cut(s)	313
RsaI	GTAC	6 cut(s)	20, 267, 395, 640, 749, 776
RsaNI	GTAC	6 cut(s)	19, 266, 394, 639, 748, 775
RseI	CAYNNNNRTG	4 cut(s)	29, 50, 138, 1087
SaqAI	TTAA	3 cut(s)	606, 1073, 1204
SatI	GCNGC	7 cut(s)	99, 356, 462, 555, 825, 1116, 1139
Sau3AI	GATC	4 cut(s)	418, 442, 757, 853
Sau96I	GGNCC	2 cut(s)	407, 1022
ScaI	AGTACT	3 cut(s)	20, 267, 395
SchI	GAGTC	2 cut(s)	1038, 1177
ScrFI	CCNGG	3 cut(s)	500, 573, 745
SfaNI	GCATC	1 cut(s)	853
SfcI	CTRYAG	3 cut(s)	144, 220, 699
SinI	GGWCC	2 cut(s)	407, 1022
SmiMI	CAYNNNNRTG	4 cut(s)	29, 50, 138, 1087
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
Sse9I	AATT	9 cut(s)	7, 188, 422, 449, 515, 690, 932, 1005, 1171
SsiI	CCGC	2 cut(s)	101, 125
StyD4I	CCNGG	3 cut(s)	498, 571, 743
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	6 cut(s)	63, 121, 224, 527, 622, 901
TaqI	TCGA	2 cut(s)	413, 950
TasI	AATT	9 cut(s)	7, 188, 422, 449, 515, 690, 932, 1005, 1171
TatI	WGTACW	3 cut(s)	18, 265, 393
TfiI	GAWTC	2 cut(s)	807, 979
Tru1I	TTAA	3 cut(s)	606, 1073, 1204
Tru9I	TTAA	3 cut(s)	606, 1073, 1204
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	7 cut(s)	98, 355, 461, 554, 824, 1115, 1138
Tsp45I	GTSAC	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	407, 1022
XapI	RAATTY	3 cut(s)	188, 449, 690
XmiI	GTMKAC	1 cut(s)	660
ZrmI	AGTACT	3 cut(s)	20, 267, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.