RLG00000034251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003348
Physical Location & Seq
Reverse (-)
39428008 .. 39430410
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034251

Sequence Viewer

Length: 510 bp
ATGGAGTCACAACCAGCATCTGATGATGCTGATGGAAACAACACCCAAGTTGTAGGAGATTTGAAAGACCCAAAAGATGAAGGAGATGAGAAGGACCCCAAAGCTGAAGGAGATGAGAAGGACCCCAAAGCTGAAGAAGATGAAAATAGGAAACTGCATCTGCACGAAAAAAAAAATCTAAAGTTTGGAATGATTTTACAATGGTCAAGTGCCGCAAGAGCGAGCACAAACACAGCCACTCTGTTCCCTGTCCAGCGGCGGCCATGGATAGCGTCGGTGTCGCCGCGGAGTCTTTTGGCTGACTACGGGACGAGCACTTCAAAACCCGGGGCTGAGGTCGGAAGAGGAGGGACGACGAGTTCCGTCGGCGTGGATCTAGAAGCGGCTAGGAGACAGTGCGGCGTGAGGGTGTCGGGGCTGGTGCATCGACTGTGGCTTGGAGGGGCTCAGGGAGCTGCTGGCTTGGAGGAGATCTACAGCGTGGCTAATGGTGAGGTTGGCTTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.05

Weight (kDa)

5.14

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 286
AciI CCGC 7 cut(s) 213, 256, 259, 284, 286, 383, 399
AclWI GGATC 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 260
AcuI CTGAAG 2 cut(s) 126, 153
AgsI TTSAA 2 cut(s) 64, 321
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 3 cut(s) 104, 131, 455
AluI AGCT 3 cut(s) 104, 131, 455
Alw21I GWGCWC 2 cut(s) 227, 317
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 381
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 1 cut(s) 455
AspS9I GGNCC 2 cut(s) 94, 121
AsuC2I CCSGG 2 cut(s) 327, 328
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 2 cut(s) 94, 121
BanII GRGCYC 1 cut(s) 448
Bbv12I GWGCWC 2 cut(s) 227, 317
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 442
BccI CCATC 1 cut(s) 26
BcnI CCSGG 2 cut(s) 327, 328
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 377, 387
BfmI CTRYAG 1 cut(s) 475
BglII AGATCT 1 cut(s) 471
BisI GCNGC 7 cut(s) 213, 257, 260, 284, 384, 400, 456
BlsI GCNGC 7 cut(s) 214, 258, 261, 285, 385, 401, 457
Bme1390I CCNGG 2 cut(s) 327, 328
Bme18I GGWCC 2 cut(s) 94, 121
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 94, 121
BmiI GGNNCC 2 cut(s) 96, 123
BmrFI CCNGG 2 cut(s) 327, 328
BmsI GCATC 4 cut(s) 16, 26, 166, 433
Bpu10I CCTNAGC 2 cut(s) 333, 447
BpuMI CCSGG 2 cut(s) 327, 328
BsaJI CCNNGG 4 cut(s) 263, 284, 326, 327
BseDI CCNNGG 4 cut(s) 263, 284, 326, 327
BseMII CTCAG 2 cut(s) 324, 461
BseRI GAGGAG 2 cut(s) 360, 482
BseXI GCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 286
BshFI GGCC 1 cut(s) 262
BsiHKAI GWGCWC 2 cut(s) 227, 317
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 2 cut(s) 322, 364
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 2 cut(s) 322, 364
BsnI GGCC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 227, 317, 448
Bsp143I GATC 2 cut(s) 373, 471
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 7 cut(s) 213, 256, 259, 284, 286, 383, 399
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 2 cut(s) 325, 460
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 96, 123
BspPI GGATC 1 cut(s) 381
BssECI CCNNGG 4 cut(s) 263, 284, 326, 327
BssMI GATC 2 cut(s) 373, 471
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 396, 432
Bst6I CTCTTC 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 223, 460
BstDEI CTNAG 2 cut(s) 333, 447
BstDSI CCRYGG 2 cut(s) 263, 284
BstFNI CGCG 1 cut(s) 286
BstKTI GATC 2 cut(s) 376, 474
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 373, 471
BstMWI GCNNNNNNNGC 2 cut(s) 218, 452
BstSCI CCNGG 2 cut(s) 325, 326
BstSFI CTRYAG 1 cut(s) 475
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 2 cut(s) 373, 471
BstYI RGATCY 2 cut(s) 373, 471
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 2 cut(s) 263, 284
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 223, 460
CaiI CAGNNNCTG 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 94, 121
Cfr42I CCGCGG 1 cut(s) 287
Cfr9I CCCGGG 1 cut(s) 326
CseI GACGC 1 cut(s) 261
CviAII CATG 1 cut(s) 264
DdeI CTNAG 2 cut(s) 333, 447
DpnI GATC 2 cut(s) 375, 473
DpnII GATC 2 cut(s) 373, 471
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 94, 121
Eco57I CTGAAG 2 cut(s) 126, 153
Eco88I CYCGRG 1 cut(s) 326
EcoO109I RGGNCCY 2 cut(s) 94, 121
EcoT14I CCWWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 1 cut(s) 267
FaiI YATR 1 cut(s) 265
FaqI GGGAC 2 cut(s) 322, 364
FatI CATG 1 cut(s) 263
Fnu4HI GCNGC 7 cut(s) 213, 257, 260, 284, 384, 400, 456
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 7 cut(s) 213, 257, 260, 284, 384, 400, 456
FspBI CTAG 2 cut(s) 377, 387
GluI GCNGC 7 cut(s) 213, 257, 260, 284, 384, 400, 456
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 267
HinfI GANTC 2 cut(s) 5, 289
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 2 cut(s) 22, 341
Hpy188III TCNNGA 1 cut(s) 377
Hpy99I CGWCG 3 cut(s) 277, 358, 368
HpyAV CCTTC 4 cut(s) 74, 85, 101, 112
HpyCH4III ACNGT 2 cut(s) 396, 432
HpyCH4V TGCA 3 cut(s) 157, 163, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 452
HpyF3I CTNAG 2 cut(s) 333, 447
Hsp92II CATG 1 cut(s) 267
KspI CCGCGG 1 cut(s) 287
Kzo9I GATC 2 cut(s) 373, 471
LmnI GCTCC 1 cut(s) 452
LpnPI CCDG 7 cut(s) 27, 261, 266, 340, 404, 434, 444
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 4 cut(s) 16, 26, 166, 433
MaeI CTAG 2 cut(s) 377, 387
MaeIII GTNAC 1 cut(s) 6
MalI GATC 2 cut(s) 375, 473
MboI GATC 2 cut(s) 373, 471
MboII GAAGA 3 cut(s) 146, 149, 354
MflI RGATCY 2 cut(s) 373, 471
MhlI GDGCHC 3 cut(s) 227, 317, 448
MlyI GAGTC 2 cut(s) 14, 298
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 7 cut(s) 328, 338, 341, 399, 434, 460, 487
MspA1I CMGCKG 2 cut(s) 256, 286
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 2 cut(s) 327, 328
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 218, 452
NciI CCSGG 2 cut(s) 327, 328
NcoI CCATGG 1 cut(s) 263
NdeII GATC 2 cut(s) 373, 471
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 2 cut(s) 96, 123
NmuCI GTSAC 1 cut(s) 6
PkrI GCNGC 7 cut(s) 214, 258, 261, 285, 385, 401, 457
PleI GAGTC 2 cut(s) 13, 297
PpsI GAGTC 2 cut(s) 13, 297
PpuMI RGGWCCY 2 cut(s) 94, 121
Psp5II RGGWCCY 2 cut(s) 94, 121
PspN4I GGNNCC 2 cut(s) 96, 123
PspPI GGNCC 2 cut(s) 94, 121
PspPPI RGGWCCY 2 cut(s) 94, 121
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 2 cut(s) 373, 471
SacII CCGCGG 1 cut(s) 287
SatI GCNGC 7 cut(s) 213, 257, 260, 284, 384, 400, 456
Sau3AI GATC 2 cut(s) 373, 471
Sau96I GGNCC 2 cut(s) 94, 121
SchI GAGTC 2 cut(s) 14, 298
ScrFI CCNGG 2 cut(s) 327, 328
SduI GDGCHC 3 cut(s) 227, 317, 448
SetI ASST 5 cut(s) 106, 133, 339, 457, 498
SfaNI GCATC 4 cut(s) 16, 26, 166, 433
SfcI CTRYAG 1 cut(s) 475
Sfr303I CCGCGG 1 cut(s) 287
SgrBI CCGCGG 1 cut(s) 287
SinI GGWCC 2 cut(s) 94, 121
SmaI CCCGGG 1 cut(s) 328
SsiI CCGC 7 cut(s) 213, 256, 259, 284, 286, 383, 399
SspMI CTAG 2 cut(s) 377, 387
StyD4I CCNGG 2 cut(s) 325, 326
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 2 cut(s) 396, 432
TaqI TCGA 1 cut(s) 427
TauI GCSGC 6 cut(s) 215, 259, 262, 286, 386, 402
TscAI CASTG 1 cut(s) 401
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 93, 156
TspGWI ACGGA 1 cut(s) 352
TspMI CCCGGG 1 cut(s) 326
TspRI CASTG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 94, 121
XbaI TCTAGA 1 cut(s) 376
XmaI CCCGGG 1 cut(s) 326
XspI CTAG 2 cut(s) 377, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.