pycom06g04340

COP9 signalosome complex subunit 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001916
Physical Location & Seq
Forward (+)
5500564 .. 5509693
9130 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 906 bp
ATGTACAGGACCCAATATTCCCTCCTCCAAAACCACCAAAATTCATCCTTCAATTCAAAAGAAAAAGCTCTCTCTTCCCACCAAAATCTGGGTTTTTTCTTTCCGTTCTCAAAGAGGGCTTCAATGGAGGTAGAGCAGAAGCAAGCTCAAGTGATCGAGCACTTCGTGAAGCAAGCCTCTATTCTCCAGGGGTCCTCTCTCGTCAGCCTCATAGTCCAACTCACCTCCCATTCTTCTCTTTTCGCTTTCTCTGAGATTTTGGCTGTCCCCAATGTGCTCGAGCTTCAAGGAACTGGATATGCTGTATACATTGATCTGCTTCGCCTCTTTGCTCATGGAACATGGAGCGACTATAAGAGTAATGCTAGCCGTCTTCCACCACTAGTCCCAGATCAAATCACCAAGCTGAAGCAACTTACTGTGCTTTCTCTAGCTGAGATGAACAGGGTTATATCATACGAACAACTTCTTGAGCAGCTTGATCTTTCAAATGTGCGCGAACTTGAAGACTTTCTTATCAATGATTGCATGTATGCGGGCATAGTCAAAGGGAAGTTGGATCATTTGAGAAGATCTTTCGAGGTTCAGTTTGCAGCTGGGAGGGATTTGAGACCTGGACAACTAGGGAATCTGATACAGACTTTAGATGATTGGCTAGACACTACAAACAATGCACTTCTGACAATTGAAGAGAAGATCGATTGGGCAGATAAAAAGTGTGAGTTGGATGCAATACACAAAAAGGCAGTCAAGGACAGGGTGGAAGAAGTAAAGAAGTCTGTCAATAACAAGGGTGGGCGAGACTTCCAAGCCATTGATGACATTCTGTTTGGTGAAACAGCTGGACTAATGGACTATGAAGAAGATCGAACCCGAACCAAGAGGAGGAGGTCGCCAATAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PCI

Protein Analysis

302

Amino Acids

34.31

Weight (kDa)

6.2

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 123 - 194 7.3e-07 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 88
AccI GTMKAC 1 cut(s) 306
AccII CGCG 1 cut(s) 498
AciI CCGC 1 cut(s) 536
AclWI GGATC 1 cut(s) 567
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 428
AdeI CACNNNGTG 1 cut(s) 166
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 88, 885
AgsI TTSAA 7 cut(s) 52, 57, 123, 287, 489, 506, 689
AhlI ACTAGT 1 cut(s) 382
AjnI CCWGG 2 cut(s) 186, 613
AluBI AGCT 8 cut(s) 68, 146, 283, 406, 434, 478, 596, 842
AluI AGCT 8 cut(s) 68, 146, 283, 406, 434, 478, 596, 842
Alw21I GWGCWC 2 cut(s) 162, 279
Alw26I GTCTC 2 cut(s) 604, 795
AlwI GGATC 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 475, 593
ApoI RAATTY 1 cut(s) 40
ArsI GACNNNNNNTTYG 4 cut(s) 732, 764, 812, 844
Asp700I GAANNNNTTC 2 cut(s) 465, 510
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 2 cut(s) 9, 192
AsuHPI GGTGA 3 cut(s) 214, 391, 845
AsuNHI GCTAGC 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 9, 192
BbsI GAAGAC 2 cut(s) 365, 513
Bbv12I GWGCWC 2 cut(s) 162, 279
BbvI GCAGC 2 cut(s) 487, 605
BceAI ACGGC 1 cut(s) 354
BciT130I CCWGG 2 cut(s) 188, 615
BcoDI GTCTC 2 cut(s) 604, 795
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 5 cut(s) 366, 383, 431, 623, 656
BglII AGATCT 1 cut(s) 572
BisI GCNGC 2 cut(s) 476, 594
BlsI GCNGC 2 cut(s) 477, 595
Bme1390I CCNGG 2 cut(s) 188, 615
Bme18I GGWCC 2 cut(s) 9, 192
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 9, 192
BmiI GGNNCC 2 cut(s) 11, 193
BmrFI CCNGG 2 cut(s) 188, 615
BmsI GCATC 1 cut(s) 718
BmtI GCTAGC 1 cut(s) 369
BpiI GAAGAC 2 cut(s) 365, 513
BpmI CTGGAG 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 132, 491
Bsa29I ATCGAT 1 cut(s) 699
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 885
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 2 cut(s) 188, 615
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 44, 733
BseLI CCNNNNNNNGG 2 cut(s) 88, 885
BseMII CTCAG 2 cut(s) 243, 426
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 3 cut(s) 14, 898, 901
BseXI GCAGC 2 cut(s) 487, 605
BseYI CCCAGC 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 498
BshVI ATCGAT 1 cut(s) 699
BsiHKAI GWGCWC 2 cut(s) 162, 279
BsiHKCI CYCGRG 1 cut(s) 278
BslFI GGGAC 2 cut(s) 251, 371
BslI CCNNNNNNNGG 2 cut(s) 88, 885
BsmAI GTCTC 2 cut(s) 604, 795
BsmFI GGGAC 2 cut(s) 251, 371
Bso31I GGTCTC 1 cut(s) 604
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 162, 279
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 8 cut(s) 153, 313, 391, 481, 559, 572, 696, 865
BspACI CCGC 1 cut(s) 536
BspCNI CTCAG 2 cut(s) 244, 427
BspDI ATCGAT 1 cut(s) 699
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 11, 193
BspOI GCTAGC 1 cut(s) 369
BspPI GGATC 1 cut(s) 567
BspTNI GGTCTC 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 8 cut(s) 153, 313, 391, 481, 559, 572, 696, 865
BssNAI GTATAC 1 cut(s) 307
Bst1107I GTATAC 1 cut(s) 307
Bst2UI CCWGG 2 cut(s) 188, 615
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 2 cut(s) 79, 684
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 4 cut(s) 144, 174, 367, 538
BstDEI CTNAG 2 cut(s) 252, 435
BstF5I GGATG 2 cut(s) 44, 733
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 8 cut(s) 156, 316, 394, 484, 562, 575, 699, 868
BstMAI GTCTC 2 cut(s) 604, 795
BstMBI GATC 8 cut(s) 153, 313, 391, 481, 559, 572, 696, 865
BstNI CCWGG 2 cut(s) 188, 615
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 186, 613
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 2 cut(s) 487, 605
BstV2I GAAGAC 2 cut(s) 365, 513
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BstZ17I GTATAC 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 699
BsuTUI ATCGAT 1 cut(s) 699
BtsCI GGATG 2 cut(s) 44, 733
Cac8I GCNNGC 4 cut(s) 144, 174, 367, 538
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 2 cut(s) 9, 192
ClaI ATCGAT 1 cut(s) 699
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 335, 342, 529
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 252, 435
DpnI GATC 8 cut(s) 155, 315, 393, 483, 561, 574, 698, 867
DpnII GATC 8 cut(s) 153, 313, 391, 481, 559, 572, 696, 865
DraIII CACNNNGTG 1 cut(s) 166
Eam1104I CTCTTC 2 cut(s) 79, 684
EarI CTCTTC 2 cut(s) 79, 684
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 2 cut(s) 9, 192
Eco57I CTGAAG 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 9, 192
EcoRII CCWGG 2 cut(s) 186, 613
FaeI CATG 3 cut(s) 338, 345, 532
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 2 cut(s) 251, 371
FatI CATG 3 cut(s) 334, 341, 528
FauI CCCGC 1 cut(s) 529
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 476, 594
FokI GGATG 2 cut(s) 31, 740
Fsp4HI GCNGC 2 cut(s) 476, 594
FspBI CTAG 5 cut(s) 366, 383, 431, 623, 656
GlaI GCGC 1 cut(s) 497
GluI GCNGC 2 cut(s) 476, 594
GsaI CCCAGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 170
HhaI GCGC 1 cut(s) 498
Hin1II CATG 3 cut(s) 338, 345, 532
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 1 cut(s) 628
HphI GGTGA 3 cut(s) 214, 391, 845
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 253, 633, 681
Hpy188III TCNNGA 2 cut(s) 166, 470
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4V TGCA 4 cut(s) 528, 593, 674, 731
HpyF3I CTNAG 2 cut(s) 252, 435
Hsp92II CATG 3 cut(s) 338, 345, 532
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 8 cut(s) 153, 313, 391, 481, 559, 572, 696, 865
LmnI GCTCC 1 cut(s) 345
Lsp1109I GCAGC 2 cut(s) 487, 605
LweI GCATC 1 cut(s) 718
MaeI CTAG 5 cut(s) 366, 383, 431, 623, 656
MalI GATC 8 cut(s) 155, 315, 393, 483, 561, 574, 698, 867
MboI GATC 8 cut(s) 153, 313, 391, 481, 559, 572, 696, 865
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 162, 279
MluCI AATT 3 cut(s) 40, 52, 684
MmeI TCCRAC 3 cut(s) 241, 537, 705
MroXI GAANNNNTTC 2 cut(s) 465, 510
MspA1I CMGCKG 2 cut(s) 596, 842
MspR9I CCNGG 2 cut(s) 188, 615
MunI CAATTG 1 cut(s) 684
MvaI CCWGG 2 cut(s) 188, 615
MvnI CGCG 1 cut(s) 498
NdeII GATC 8 cut(s) 153, 313, 391, 481, 559, 572, 696, 865
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 3 cut(s) 338, 345, 532
NlaIV GGNNCC 2 cut(s) 11, 193
NspI RCATGY 1 cut(s) 532
PaeR7I CTCGAG 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdmI GAANNNNTTC 2 cut(s) 465, 510
PfeI GAWTC 1 cut(s) 628
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 477, 595
PpuMI RGGWCCY 2 cut(s) 9, 192
Psp5II RGGWCCY 2 cut(s) 9, 192
Psp6I CCWGG 2 cut(s) 186, 613
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 2 cut(s) 186, 613
PspN4I GGNNCC 2 cut(s) 11, 193
PspPI GGNCC 2 cut(s) 9, 192
PspPPI RGGWCCY 2 cut(s) 9, 192
PspXI VCTCGAGB 1 cut(s) 278
PsuI RGATCY 1 cut(s) 572
PvuII CAGCTG 2 cut(s) 596, 842
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 2 cut(s) 476, 594
Sau3AI GATC 8 cut(s) 153, 313, 391, 481, 559, 572, 696, 865
Sau96I GGNCC 2 cut(s) 9, 192
ScrFI CCNGG 2 cut(s) 188, 615
SduI GDGCHC 2 cut(s) 162, 279
SfaNI GCATC 1 cut(s) 718
Sfr274I CTCGAG 1 cut(s) 278
SinI GGWCC 2 cut(s) 9, 192
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 3 cut(s) 147, 278, 470
SmoI CTYRAG 3 cut(s) 147, 278, 470
SpeI ACTAGT 1 cut(s) 382
Sse9I AATT 3 cut(s) 40, 52, 684
SsiI CCGC 1 cut(s) 536
SspI AATATT 1 cut(s) 17
SspMI CTAG 5 cut(s) 366, 383, 431, 623, 656
StyD4I CCNGG 2 cut(s) 186, 613
TaaI ACNGT 1 cut(s) 421
TaqI TCGA 5 cut(s) 156, 279, 579, 699, 868
TasI AATT 3 cut(s) 40, 52, 684
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 628
TseI GCWGC 2 cut(s) 475, 593
TspDTI ATGAA 3 cut(s) 33, 455, 873
TspGWI ACGGA 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 9, 192
XapI RAATTY 1 cut(s) 40
XceI RCATGY 1 cut(s) 532
XhoI CTCGAG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 2 cut(s) 465, 510
XspI CTAG 5 cut(s) 366, 383, 431, 623, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.