Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

20635357 .. 20636319

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGACATACTCTTCGCCCAGATCCAAGCGGACCTCCGCTCCAACGACGCCCTCCGCCAGTCCGGCGCTCTCCTCCAAGCCCTCCAGCAATCCGCCGCCGGCCGCGACATCTCCGTCATCGCCAAGACCGCTGTCGAAGAGATCGTCGCCTCCCCCGCCTCCGCCGTCAGTAAAAAACTCGCCTTTGACCTCATTCGCTCCACCCGCCTCACTGCCGACCTCTGGGACACCGTCTGCGTCGGAATTCTCACCGATCTCGACTTCCCCGACCCTGACGTCAGCGCCGCCGCCGTCTCCATCCTCGCCGCAATCCCTTCCTACCGCCTCTCCAAGCTCATTACCGACGCGCAGAAAGAAATCAACAGTTGCTTCGATTCGCCGAGCGACAATCTCCGCTTCTCCATTACTGAAACCCTCGGATGCATTCTGGCGCGCGATGACCTCGTCACGCTCTGCGAGAACAATGTCAATTTGCTCGACAAGGTGTCGAATTGGTGGTCCCGCATTGGCCAGAACATGCTCGACAGATCCGACGCCGTTTCAAAGGTTGCGTTCGAGTCGGTGGGCAGGTTGTTTCAGGAGTTCGATTCCAAGAGGATGAGCAGACTTGCCGGTGACAAGTTAGTGGATAGTGAGAACTCGCTGGCGATTCGATCCAATTGGGTGTCGTCGATGGTCGACTTCGTGTGGAAGAAGCGGAGTGCTTTAATGGCGAGGTCGTTAGTTTTGCCGGTGGAGAGCTTCCGGGCCACTGTGTTTCCGATCGTTTATGCGGTCAAGGCCATTGCTTCGGGCTCAGTGGAGGTCATAAGGAAGCTGTCAAAGTCGTCTAAGGGGTCCAGTGGGACGGTTGTGGATTCCAATGCGGAGAGGTTGGTGGGAGTTTCGGATGTGGTCACGCATTTGGTGCCATTCTTGGCGTCGTCATTGGATCACGGCTTTGATTTTCGAAGTTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

34.9

Weight (kDa)

5.4

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	113, 275
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	907
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	4 cut(s)	105, 347, 433, 435
AclWI	GGATC	4 cut(s)	16, 522, 648, 939
AcoI	YGGCCR	2 cut(s)	100, 508
AcsI	RAATTY	1 cut(s)	243
AcyI	GRCGYC	4 cut(s)	48, 276, 534, 920
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	543
AhdI	GACNNNNNGTC	1 cut(s)	484
AluBI	AGCT	3 cut(s)	334, 741, 817
AluI	AGCT	3 cut(s)	334, 741, 817
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	4 cut(s)	16, 522, 648, 939
AoxI	GGCC	4 cut(s)	100, 508, 747, 780
ApoI	RAATTY	1 cut(s)	243
ArsI	GACNNNNNNTTYG	5 cut(s)	28, 129, 161, 482, 514
AspLEI	GCGC	5 cut(s)	68, 284, 349, 433, 435
AspS9I	GGNCC	4 cut(s)	31, 498, 747, 837
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	241, 626
AsuII	TTCGAA	1 cut(s)	949
AvaII	GGWCC	3 cut(s)	31, 498, 837
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	907
BanII	GRGCYC	1 cut(s)	797
BccI	CCATC	2 cut(s)	305, 667
BceAI	ACGGC	4 cut(s)	149, 275, 521, 952
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	1 cut(s)	298
BfoI	RGCGCY	2 cut(s)	69, 285
BfuAI	ACCTGC	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
BlsI	GCNGC	5 cut(s)	97, 104, 286, 289, 307
Bme1390I	CCNGG	1 cut(s)	746
Bme18I	GGWCC	3 cut(s)	31, 498, 837
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmgT120I	GGNCC	4 cut(s)	31, 498, 747, 837
BmiI	GGNNCC	3 cut(s)	500, 838, 909
BmrFI	CCNGG	1 cut(s)	746
BmsI	GCATC	1 cut(s)	410
BoxI	GACNNNNGTC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	949
BpuMI	CCSGG	1 cut(s)	746
BsaHI	GRCGYC	4 cut(s)	48, 276, 534, 920
BsaJI	CCNNGG	1 cut(s)	415
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse118I	RCCGGY	3 cut(s)	98, 611, 730
Bse1I	ACTGG	2 cut(s)	58, 840
Bse3DI	GCAATG	1 cut(s)	783
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	4 cut(s)	297, 425, 603, 895
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	2 cut(s)	58, 840
BsePI	GCGCGC	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	100
Bsh1236I	CGCG	4 cut(s)	105, 347, 433, 435
Bsh1285I	CGRYCG	2 cut(s)	103, 765
BshFI	GGCC	4 cut(s)	102, 510, 749, 782
BshNI	GGYRCC	1 cut(s)	907
BsiEI	CGRYCG	2 cut(s)	103, 765
BsiSI	CCGG	5 cut(s)	63, 99, 612, 731, 745
BslFI	GGGAC	3 cut(s)	239, 484, 859
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	298
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	3 cut(s)	239, 484, 859
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	4 cut(s)	102, 510, 749, 782
Bsp119I	TTCGAA	1 cut(s)	949
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp143I	GATC	7 cut(s)	21, 141, 253, 527, 653, 762, 931
BspANI	GGCC	4 cut(s)	102, 510, 749, 782
BspCNI	CTCAG	1 cut(s)	809
BspFNI	CGCG	4 cut(s)	105, 347, 433, 435
BspLI	GGNNCC	3 cut(s)	500, 838, 909
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	4 cut(s)	16, 522, 648, 939
BspT104I	TTCGAA	1 cut(s)	949
BspT107I	GGYRCC	1 cut(s)	907
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	3 cut(s)	98, 611, 730
BsrI	ACTGG	2 cut(s)	58, 840
BssAI	RCCGGY	3 cut(s)	98, 611, 730
BssECI	CCNNGG	1 cut(s)	415
BssHII	GCGCGC	1 cut(s)	431
BssMI	GATC	7 cut(s)	21, 141, 253, 527, 653, 762, 931
BssNI	GRCGYC	4 cut(s)	48, 276, 534, 920
Bst4CI	ACNGT	4 cut(s)	232, 365, 754, 850
Bst6I	CTCTTC	2 cut(s)	17, 132
BstACI	GRCGYC	4 cut(s)	48, 276, 534, 920
BstAPI	GCANNNNNTGC	1 cut(s)	907
BstBI	TTCGAA	1 cut(s)	949
BstC8I	GCNNGC	3 cut(s)	100, 433, 645
BstDEI	CTNAG	2 cut(s)	796, 831
BstF5I	GGATG	4 cut(s)	297, 425, 603, 895
BstFNI	CGCG	4 cut(s)	105, 347, 433, 435
BstH2I	RGCGCY	2 cut(s)	69, 285
BstHHI	GCGC	5 cut(s)	68, 284, 349, 433, 435
BstKTI	GATC	7 cut(s)	24, 144, 256, 530, 656, 765, 934
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	7 cut(s)	21, 141, 253, 527, 653, 762, 931
BstMCI	CGRYCG	2 cut(s)	103, 765
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 128, 155, 204, 710, 779, 907
BstNSI	RCATGY	1 cut(s)	520
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	744
BstUI	CGCG	4 cut(s)	105, 347, 433, 435
BstX2I	RGATCY	2 cut(s)	21, 527
BstYI	RGATCY	2 cut(s)	21, 527
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	4 cut(s)	102, 510, 749, 782
BtgZI	GCGATG	2 cut(s)	103, 450
BtsCI	GGATG	4 cut(s)	297, 425, 603, 895
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	4 cut(s)	210, 750, 804, 847
BveI	ACCTGC	1 cut(s)	558
Cac8I	GCNNGC	3 cut(s)	100, 433, 645
CfoI	GCGC	5 cut(s)	68, 284, 349, 433, 435
Cfr10I	RCCGGY	3 cut(s)	98, 611, 730
Cfr13I	GGNCC	4 cut(s)	31, 498, 747, 837
CseI	GACGC	5 cut(s)	56, 226, 353, 542, 909
CviAII	CATG	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	796, 831
DpnI	GATC	7 cut(s)	23, 143, 255, 529, 655, 764, 933
DpnII	GATC	7 cut(s)	21, 141, 253, 527, 653, 762, 931
DrdI	GACNNNNNNGTC	2 cut(s)	113, 275
DriI	GACNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	2 cut(s)	113, 275
EaeI	YGGCCR	2 cut(s)	100, 508
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	17, 132
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EarI	CTCTTC	2 cut(s)	17, 132
EciI	GGCGGA	3 cut(s)	44, 82, 151
EclXI	CGGCCG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	797
Eco47I	GGWCC	3 cut(s)	31, 498, 837
Eco52I	CGGCCG	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	797
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	1 cut(s)	520
FaiI	YATR	4 cut(s)	8, 518, 771, 809
FaqI	GGGAC	3 cut(s)	239, 484, 859
FatI	CATG	1 cut(s)	516
FauI	CCCGC	3 cut(s)	163, 212, 509
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
FokI	GGATG	4 cut(s)	284, 432, 610, 902
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
GlaI	GCGC	5 cut(s)	67, 283, 348, 432, 434
GluI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	2 cut(s)	69, 285
HaeIII	GGCC	4 cut(s)	102, 510, 749, 782
HapII	CCGG	5 cut(s)	63, 99, 612, 731, 745
HgaI	GACGC	5 cut(s)	56, 226, 353, 542, 909
HhaI	GCGC	5 cut(s)	68, 284, 349, 433, 435
Hin1I	GRCGYC	4 cut(s)	48, 276, 534, 920
Hin1II	CATG	1 cut(s)	520
Hin6I	GCGC	5 cut(s)	66, 282, 347, 431, 433
HinP1I	GCGC	5 cut(s)	66, 282, 347, 431, 433
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	5 cut(s)	374, 557, 587, 649, 857
HpaII	CCGG	5 cut(s)	63, 99, 612, 731, 745
HphI	GGTGA	2 cut(s)	241, 626
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	5 cut(s)	242, 419, 532, 762, 889
Hpy188III	TCNNGA	2 cut(s)	257, 578
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	7 cut(s)	50, 149, 242, 347, 536, 673, 925
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	4 cut(s)	232, 365, 754, 850
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 128, 155, 204, 710, 779, 907
HpyF3I	CTNAG	2 cut(s)	796, 831
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	4 cut(s)	48, 276, 534, 920
Hsp92II	CATG	1 cut(s)	520
HspAI	GCGC	5 cut(s)	66, 282, 347, 431, 433
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	7 cut(s)	21, 141, 253, 527, 653, 762, 931
LmnI	GCTCC	2 cut(s)	44, 203
LweI	GCATC	1 cut(s)	410
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	445, 614, 895
MalI	GATC	7 cut(s)	23, 143, 255, 529, 655, 764, 933
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	7 cut(s)	21, 141, 253, 527, 653, 762, 931
MboII	GAAGA	3 cut(s)	4, 149, 703
MfeI	CAATTG	1 cut(s)	658
MflI	RGATCY	2 cut(s)	21, 527
MhlI	GDGCHC	1 cut(s)	797
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	4 cut(s)	243, 469, 490, 658
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	3 cut(s)	66, 220, 555
Mox20I	TGGCCA	1 cut(s)	510
Mph1103I	ATGCAT	1 cut(s)	425
MroNI	GCCGGC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	1 cut(s)	707
Msp20I	TGGCCA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	5 cut(s)	63, 99, 612, 731, 745
MspR9I	CCNGG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	658
Mva1269I	GAATGC	1 cut(s)	423
MvnI	CGCG	4 cut(s)	105, 347, 433, 435
MwoI	GCNNNNNNNGC	7 cut(s)	63, 128, 155, 204, 710, 779, 907
NaeI	GCCGGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	7 cut(s)	21, 141, 253, 527, 653, 762, 931
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	520
NlaIV	GGNNCC	3 cut(s)	500, 838, 909
NmeAIII	GCCGAG	1 cut(s)	405
NmuCI	GTSAC	3 cut(s)	445, 614, 895
NsiI	ATGCAT	1 cut(s)	425
NspI	RCATGY	1 cut(s)	520
NspV	TTCGAA	1 cut(s)	949
PauI	GCGCGC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	3 cut(s)	141, 264, 528
PctI	GAATGC	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	4 cut(s)	374, 587, 649, 857
PflFI	GACNNNGTC	2 cut(s)	230, 443
PkrI	GCNGC	5 cut(s)	97, 104, 286, 289, 307
Ple19I	CGATCG	1 cut(s)	765
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PshAI	GACNNNNGTC	1 cut(s)	131
PspN4I	GGNNCC	3 cut(s)	500, 838, 909
PspPI	GGNCC	4 cut(s)	31, 498, 747, 837
PsuI	RGATCY	2 cut(s)	21, 527
PsyI	GACNNNGTC	2 cut(s)	230, 443
PteI	GCGCGC	1 cut(s)	431
PvuI	CGATCG	1 cut(s)	765
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
Sau3AI	GATC	7 cut(s)	21, 141, 253, 527, 653, 762, 931
Sau96I	GGNCC	4 cut(s)	31, 498, 747, 837
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	746
SduI	GDGCHC	1 cut(s)	797
SfaNI	GCATC	1 cut(s)	410
SfuI	TTCGAA	1 cut(s)	949
SinI	GGWCC	3 cut(s)	31, 498, 837
Sse9I	AATT	4 cut(s)	243, 469, 490, 658
StyD4I	CCNGG	1 cut(s)	744
TaaI	ACNGT	4 cut(s)	232, 365, 754, 850
TaiI	ACGT	1 cut(s)	279
TasI	AATT	4 cut(s)	243, 469, 490, 658
TauI	GCSGC	5 cut(s)	98, 105, 287, 290, 308
TfiI	GAWTC	4 cut(s)	374, 587, 649, 857
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TscAI	CASTG	4 cut(s)	217, 757, 804, 847
TseFI	GTSAC	3 cut(s)	445, 614, 895
Tsp45I	GTSAC	3 cut(s)	445, 614, 895
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	4 cut(s)	217, 757, 804, 847
Tth111I	GACNNNGTC	2 cut(s)	230, 443
VpaK11BI	GGWCC	3 cut(s)	31, 498, 837
XapI	RAATTY	1 cut(s)	243
XceI	RCATGY	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	678
ZraI	GACGTC	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.