Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

44294879 .. 44295610

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG335800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGGTGCATTCTCGCACGTGACAATCTCGTGACTCTGTGTGAGAACAATGTCAATCTGCTGGATAAGATCTTCGGCTGGTGGGGCCGGATCGGCCAGAACATGCTCGACGGCTCCGACGCCGTTTCGAAGGTCGGGTTCGAGTCTGTGGGGCGGTTGTTTCAGGAGTTCGATACCAAAAGGATGAGCAGACTCGCCGGAGATAAGTTGATAGATAGTGAGAATTCGCTTGCGATTCGATCCAATTGGGTCTCTTCAATGGTGGACTTCGTCTGGGAGAAGCGGAGTGCTCTAATGGCGAGGTCGTTGGTTTTGCTGGTGGAGAGTTTCAGGGCCACGGTGTTTCCGATTGTGTATGCCGTTAAGGCTGTGGCCTCCGGCTCCGTCGAGGTCATAAAGAAGCTATCCAAGTCTTCTGGTGGTTCTAATGCGACTATTGTGGATAGTAATACCGAGAGGTTCGTCGGAGTTTCGAATGTGGTGACGCATTTGGTGCTCTTTTTGGCCTGGTCTTTGGATCCAGCTTTGATTTTTGAGGTGGGAATTGACATGTTGTACTTGGCTGATGTTCCTGGTAGGAAGCCTGAGTGGGCTTCGAAATCCATTATTGCAATTCTCACACTTTGGGATAGGCAAGAGTTTGCTTCAGCTAGGGAAAGTATTGTTAGAGCTGTTGTTACAAATCTTCATCTTCTCGATCTTCATATGCAGGTATGCTTACTTGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.95

Weight (kDa)

5.96

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AciI	CCGC	2 cut(s)	154, 283
AclWI	GGATC	4 cut(s)	98, 234, 512, 525
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	630
AcvI	CACGTG	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	258
AjnI	CCWGG	2 cut(s)	506, 571
AluBI	AGCT	4 cut(s)	403, 524, 650, 671
AluI	AGCT	4 cut(s)	403, 524, 650, 671
Alw21I	GWGCWC	2 cut(s)	292, 498
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	4 cut(s)	98, 234, 512, 525
AoxI	GGCC	5 cut(s)	85, 94, 333, 372, 504
ApoI	RAATTY	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	85, 333
AsuHPI	GGTGA	1 cut(s)	493
AsuII	TTCGAA	3 cut(s)	128, 473, 596
BamHI	GGATCC	1 cut(s)	517
BauI	CACGAG	1 cut(s)	29
BbrPI	CACGTG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	292, 498
BceAI	ACGGC	3 cut(s)	107, 127, 344
BciT130I	CCWGG	2 cut(s)	508, 573
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	700
BglI	GCCNNNNNGGC	2 cut(s)	93, 365
BglII	AGATCT	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	508, 573
BmgT120I	GGNCC	2 cut(s)	85, 333
BmiI	GGNNCC	4 cut(s)	86, 115, 382, 519
BmrFI	CCNGG	2 cut(s)	508, 573
BpiI	GAAGAC	1 cut(s)	405
Bpu14I	TTCGAA	3 cut(s)	128, 473, 596
BsaAI	YACGTR	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	508, 573
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	576
BshFI	GGCC	5 cut(s)	87, 96, 335, 374, 506
BsiHKAI	GWGCWC	2 cut(s)	292, 498
BsiSI	CCGG	3 cut(s)	88, 198, 378
BsmAI	GTCTC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	5 cut(s)	87, 96, 335, 374, 506
Bso31I	GGTCTC	1 cut(s)	256
Bsp119I	TTCGAA	3 cut(s)	128, 473, 596
Bsp1286I	GDGCHC	2 cut(s)	292, 498
Bsp143I	GATC	5 cut(s)	69, 90, 239, 517, 697
BspACI	CCGC	2 cut(s)	154, 283
BspANI	GGCC	5 cut(s)	87, 96, 335, 374, 506
BspCNI	CTCAG	1 cut(s)	577
BspLI	GGNNCC	4 cut(s)	86, 115, 382, 519
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	4 cut(s)	98, 234, 512, 525
BspT104I	TTCGAA	3 cut(s)	128, 473, 596
BspTNI	GGTCTC	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	5 cut(s)	69, 90, 239, 517, 697
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	508, 573
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstBAI	YACGTR	1 cut(s)	20
BstBI	TTCGAA	3 cut(s)	128, 473, 596
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	585
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	5 cut(s)	72, 93, 242, 520, 700
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	5 cut(s)	69, 90, 239, 517, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 93, 296, 365, 493
BstNI	CCWGG	2 cut(s)	508, 573
BstNSI	RCATGY	2 cut(s)	106, 553
BstSCI	CCNGG	2 cut(s)	506, 571
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	2 cut(s)	69, 517
BstYI	RGATCY	2 cut(s)	69, 517
BsuRI	GGCC	5 cut(s)	87, 96, 335, 374, 506
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	85, 333
CseI	GACGC	2 cut(s)	128, 493
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	2 cut(s)	103, 550
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	1 cut(s)	585
DpnI	GATC	5 cut(s)	71, 92, 241, 519, 699
DpnII	GATC	5 cut(s)	69, 90, 239, 517, 697
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	630
Eco72I	CACGTG	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	506, 571
FaeI	CATG	2 cut(s)	106, 553
FaiI	YATR	8 cut(s)	104, 357, 395, 551, 705, 707, 715, 730
FatI	CATG	2 cut(s)	102, 549
FauNDI	CATATG	1 cut(s)	705
FokI	GGATG	1 cut(s)	196
FspBI	CTAG	1 cut(s)	651
HaeIII	GGCC	5 cut(s)	87, 96, 335, 374, 506
HapII	CCGG	3 cut(s)	88, 198, 378
HgaI	GACGC	2 cut(s)	128, 493
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	106, 553
HinfI	GANTC	4 cut(s)	34, 143, 192, 235
HpaII	CCGG	3 cut(s)	88, 198, 378
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	118, 348, 467
Hpy188III	TCNNGA	3 cut(s)	31, 164, 695
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	4 cut(s)	113, 122, 389, 467
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	9, 611, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 93, 296, 365, 493
HpyF3I	CTNAG	1 cut(s)	585
HpySE526I	ACGT	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	106, 553
Kzo9I	GATC	5 cut(s)	69, 90, 239, 517, 697
LmnI	GCTCC	2 cut(s)	119, 386
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	4 cut(s)	20, 31, 481, 676
MalI	GATC	5 cut(s)	71, 92, 241, 519, 699
MboI	GATC	5 cut(s)	69, 90, 239, 517, 697
MboII	GAAGA	6 cut(s)	64, 246, 405, 677, 683, 692
MfeI	CAATTG	1 cut(s)	244
MflI	RGATCY	2 cut(s)	69, 517
MhlI	GDGCHC	2 cut(s)	292, 498
MluCI	AATT	4 cut(s)	223, 244, 543, 612
MlyI	GAGTC	3 cut(s)	28, 152, 186
MmeI	TCCRAC	2 cut(s)	141, 445
MnlI	CCTC	5 cut(s)	294, 382, 385, 450, 529
MseI	TTAA	1 cut(s)	363
MspI	CCGG	3 cut(s)	88, 198, 378
MspR9I	CCNGG	2 cut(s)	508, 573
MunI	CAATTG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	9
MvaI	CCWGG	2 cut(s)	508, 573
MwoI	GCNNNNNNNGC	5 cut(s)	84, 93, 296, 365, 493
NdeI	CATATG	1 cut(s)	705
NdeII	GATC	5 cut(s)	69, 90, 239, 517, 697
NlaIII	CATG	2 cut(s)	106, 553
NlaIV	GGNNCC	4 cut(s)	86, 115, 382, 519
NmuCI	GTSAC	3 cut(s)	20, 31, 481
NspI	RCATGY	2 cut(s)	106, 553
NspV	TTCGAA	3 cut(s)	128, 473, 596
PciI	ACATGT	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 344
PctI	GAATGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	235
PflFI	GACNNNGTC	1 cut(s)	269
PleI	GAGTC	3 cut(s)	28, 151, 186
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
PpsI	GAGTC	3 cut(s)	28, 151, 186
Ppu21I	YACGTR	1 cut(s)	20
PscI	ACATGT	1 cut(s)	549
Psp6I	CCWGG	2 cut(s)	506, 571
PspCI	CACGTG	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	506, 571
PspN4I	GGNNCC	4 cut(s)	86, 115, 382, 519
PspPI	GGNCC	2 cut(s)	85, 333
PsuI	RGATCY	2 cut(s)	69, 517
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	5 cut(s)	69, 90, 239, 517, 697
Sau96I	GGNCC	2 cut(s)	85, 333
SchI	GAGTC	3 cut(s)	28, 152, 186
ScrFI	CCNGG	2 cut(s)	508, 573
SduI	GDGCHC	2 cut(s)	292, 498
SfiI	GGCCNNNNNGGCC	1 cut(s)	93
SfuI	TTCGAA	3 cut(s)	128, 473, 596
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	4 cut(s)	223, 244, 543, 612
SsiI	CCGC	2 cut(s)	154, 283
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	506, 571
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	9 cut(s)	108, 128, 141, 171, 238, 387, 473, 596, 696
TasI	AATT	4 cut(s)	223, 244, 543, 612
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	3 cut(s)	20, 31, 481
Tsp45I	GTSAC	3 cut(s)	20, 31, 481
TspDTI	ATGAA	2 cut(s)	677, 692
TspGWI	ACGGA	1 cut(s)	373
Tth111I	GACNNNGTC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	2 cut(s)	106, 553
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.