Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007646.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

11183 .. 11551

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007646.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ctggctgcgcgtccttctctctctcccttcagcaatccgccgccggcctcgacatctccgtcatcgccaagtccgccgtcgaagagatcgtcgcctcccccgcctccgccgtctgcaagaagctcacattcgaccacgcgcctcacagtcgacctctgggacaccgtctgcaccggcatcctcaccgatctcgacttccccgaccctgacgtcagcgccgccgccgtctcgatcctcaccgccatcccctcctaccgcctccccaagctcatctccaacaccatgaaggagatcaacaactgcttcgacttgccgtctgataaccttcggttcgcaatcacttacacggcggctggtggggccggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

12.73

Weight (kDa)

6.75

Isoelectric Point (pI)

78.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	58, 209
AatII	GACGTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	2 cut(s)	10, 139
AclWI	GGATC	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	210
AhdI	GACNNNNNGTC	1 cut(s)	313
AluBI	AGCT	2 cut(s)	123, 268
AluI	AGCT	2 cut(s)	123, 268
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	2 cut(s)	45, 360
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	3 cut(s)	10, 141, 218
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	175, 229
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	5 cut(s)	61, 94, 209, 298, 363
BcoDI	GTCTC	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	5 cut(s)	6, 41, 219, 222, 351
BlsI	GCNGC	5 cut(s)	7, 42, 220, 223, 352
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	361
BmsI	GCATC	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	210
Bse118I	RCCGGY	2 cut(s)	43, 173
BseGI	GGATG	2 cut(s)	177, 243
BsgI	GTGCAG	1 cut(s)	154
Bsh1236I	CGCG	2 cut(s)	10, 139
BshFI	GGCC	2 cut(s)	47, 362
BsiSI	CCGG	3 cut(s)	44, 174, 363
BslFI	GGGAC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	47, 362
Bsp143I	GATC	4 cut(s)	86, 187, 231, 291
BspANI	GGCC	2 cut(s)	47, 362
BspFNI	CGCG	2 cut(s)	10, 139
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	226
BsrFI	RCCGGY	2 cut(s)	43, 173
BssAI	RCCGGY	2 cut(s)	43, 173
BssMI	GATC	4 cut(s)	86, 187, 231, 291
BssNI	GRCGYC	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	148, 166
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	177, 243
BstFNI	CGCG	2 cut(s)	10, 139
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	3 cut(s)	10, 141, 218
BstKTI	GATC	4 cut(s)	89, 190, 234, 294
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	4 cut(s)	86, 187, 231, 291
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 100, 359
BstUI	CGCG	2 cut(s)	10, 139
BsuRI	GGCC	2 cut(s)	47, 362
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	177, 243
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	3 cut(s)	10, 141, 218
Cfr10I	RCCGGY	2 cut(s)	43, 173
Cfr13I	GGNCC	1 cut(s)	360
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	6 cut(s)	5, 47, 123, 268, 353, 362
CviKI_1	RGCY	6 cut(s)	5, 47, 123, 268, 353, 362
DpnI	GATC	4 cut(s)	88, 189, 233, 293
DpnII	GATC	4 cut(s)	86, 187, 231, 291
DrdI	GACNNNNNNGTC	2 cut(s)	58, 209
DriI	GACNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	2 cut(s)	58, 209
Eam1104I	CTCTTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	3 cut(s)	27, 63, 96
Eco57I	CTGAAG	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	1 cut(s)	286
FaiI	YATR	1 cut(s)	284
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	282
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	5 cut(s)	6, 41, 219, 222, 351
FokI	GGATG	2 cut(s)	164, 230
Fsp4HI	GCNGC	5 cut(s)	6, 41, 219, 222, 351
GlaI	GCGC	3 cut(s)	9, 140, 217
GluI	GCNGC	5 cut(s)	6, 41, 219, 222, 351
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	47, 362
HapII	CCGG	3 cut(s)	44, 174, 363
HhaI	GCGC	3 cut(s)	10, 141, 218
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	3 cut(s)	8, 139, 216
HinP1I	GCGC	3 cut(s)	8, 139, 216
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HpaII	CCGG	3 cut(s)	44, 174, 363
HphI	GGTGA	2 cut(s)	175, 229
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	2 cut(s)	191, 229
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	2 cut(s)	82, 94
HpyAV	CCTTC	4 cut(s)	24, 37, 280, 335
HpyCH4III	ACNGT	2 cut(s)	148, 166
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	116, 171
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 100, 359
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	3 cut(s)	8, 139, 216
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	86, 187, 231, 291
LpnPI	CCDG	5 cut(s)	57, 142, 187, 219, 339
LweI	GCATC	1 cut(s)	186
MaeII	ACGT	1 cut(s)	210
MalI	GATC	4 cut(s)	88, 189, 233, 293
MboI	GATC	4 cut(s)	86, 187, 231, 291
MboII	GAAGA	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	9 cut(s)	58, 105, 114, 152, 164, 191, 245, 259, 269
MroNI	GCCGGC	1 cut(s)	43
MspI	CCGG	3 cut(s)	44, 174, 363
MvnI	CGCG	2 cut(s)	10, 139
MwoI	GCNNNNNNNGC	3 cut(s)	73, 100, 359
NaeI	GCCGGC	1 cut(s)	45
NdeII	GATC	4 cut(s)	86, 187, 231, 291
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	3 cut(s)	56, 86, 198
PdiI	GCCGGC	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	5 cut(s)	7, 42, 220, 223, 352
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	360
PsyI	GACNNNGTC	1 cut(s)	164
SalI	GTCGAC	1 cut(s)	149
SatI	GCNGC	5 cut(s)	6, 41, 219, 222, 351
Sau3AI	GATC	4 cut(s)	86, 187, 231, 291
Sau96I	GGNCC	1 cut(s)	360
SetI	ASST	5 cut(s)	125, 156, 213, 270, 327
SfaNI	GCATC	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	148, 166
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	7 cut(s)	50, 80, 131, 150, 192, 230, 306
TauI	GCSGC	4 cut(s)	43, 221, 224, 353
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	48
Tth111I	GACNNNGTC	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	150
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.