Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003749.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

38648 .. 40675

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003749.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgtgggatctttcctctccaacacgccccctcacgtgcaacctagctctaggtctgcacgtgaaattcattcatccaattcccatattggaaattgggacacaagtctcatattggagacttggtcaatacaatccaaggcccacattcattggacacttgcaatccgccgccggtcgcgacatctccgtcatcagcaagtccgccgtcaaagagatcgtcgcctcccccacctccgctgtctgcaagaagctcgccttcgacctcattcgctccacgcgcctcaccgtcgacctctgggacaccgtctgcaccggcatcctcaccgatctcgacttctccgaccctgacgtcagcgccaccgccgtctcgatcctcgccaccatcccctcctaccgcctccccaagctcatctccgacaccaagaaggagatcaacaactgcttcgactcgccgtctgataaccttcggttcgcgatcaccgagacagctgctggtagggccggatatggtcaatctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.96

Weight (kDa)

7.68

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	188, 350
AatII	GACGTC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	3 cut(s)	180, 280, 476
AciI	CCGC	6 cut(s)	168, 171, 204, 237, 363, 397
AclWI	GGATC	2 cut(s)	15, 367
AcsI	RAATTY	1 cut(s)	65
AcvI	CACGTG	2 cut(s)	36, 61
AcyI	GRCGYC	1 cut(s)	351
AhdI	GACNNNNNGTC	1 cut(s)	454
AluBI	AGCT	4 cut(s)	47, 253, 409, 491
AluI	AGCT	4 cut(s)	47, 253, 409, 491
Alw26I	GTCTC	4 cut(s)	112, 112, 373, 479
AlwI	GGATC	2 cut(s)	15, 367
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	2 cut(s)	140, 501
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspLEI	GCGC	2 cut(s)	282, 359
AspS9I	GGNCC	2 cut(s)	141, 501
AsuHPI	GGTGA	3 cut(s)	277, 316, 472
BbrPI	CACGTG	2 cut(s)	36, 61
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	3 cut(s)	191, 350, 439
BcgI	CGANNNNNNTGC	4 cut(s)	235, 269, 473, 507
BcoDI	GTCTC	4 cut(s)	112, 112, 373, 479
BfaI	CTAG	2 cut(s)	44, 50
BfoI	RGCGCY	1 cut(s)	360
BisI	GCNGC	2 cut(s)	171, 492
BlsI	GCNGC	2 cut(s)	172, 493
BmeRI	GACNNNNNGTC	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	141, 501
BmsI	GCATC	1 cut(s)	327
BoxI	GACNNNNGTC	1 cut(s)	104
BsaAI	YACGTR	2 cut(s)	36, 61
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bse118I	RCCGGY	2 cut(s)	173, 314
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	3 cut(s)	73, 318, 384
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	2 cut(s)	41, 295
Bsh1236I	CGCG	3 cut(s)	180, 280, 476
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	142, 503
BsiEI	CGRYCG	1 cut(s)	178
BsiSI	CCGG	3 cut(s)	174, 315, 504
BslFI	GGGAC	2 cut(s)	112, 314
BsmAI	GTCTC	4 cut(s)	112, 112, 373, 479
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	2 cut(s)	112, 314
BsnI	GGCC	2 cut(s)	142, 503
Bsp143I	GATC	6 cut(s)	7, 216, 328, 372, 432, 477
Bsp68I	TCGCGA	2 cut(s)	180, 476
BspACI	CCGC	6 cut(s)	168, 171, 204, 237, 363, 397
BspANI	GGCC	2 cut(s)	142, 503
BspFNI	CGCG	3 cut(s)	180, 280, 476
BspPI	GGATC	2 cut(s)	15, 367
BsrFI	RCCGGY	2 cut(s)	173, 314
BssAI	RCCGGY	2 cut(s)	173, 314
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	6 cut(s)	7, 216, 328, 372, 432, 477
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	289, 307
BstACI	GRCGYC	1 cut(s)	351
BstBAI	YACGTR	2 cut(s)	36, 61
BstC8I	GCNNGC	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	73, 318, 384
BstFNI	CGCG	3 cut(s)	180, 280, 476
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	2 cut(s)	282, 359
BstKTI	GATC	6 cut(s)	10, 219, 331, 375, 435, 480
BstMAI	GTCTC	4 cut(s)	112, 112, 373, 479
BstMBI	GATC	6 cut(s)	7, 216, 328, 372, 432, 477
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 500
BstPAI	GACNNNNGTC	1 cut(s)	104
BstUI	CGCG	3 cut(s)	180, 280, 476
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	142, 503
BtsCI	GGATG	3 cut(s)	73, 318, 384
BtuMI	TCGCGA	2 cut(s)	180, 476
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	494
CfoI	GCGC	2 cut(s)	282, 359
Cfr10I	RCCGGY	2 cut(s)	173, 314
Cfr13I	GGNCC	2 cut(s)	141, 501
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviJI	RGCY	6 cut(s)	47, 142, 253, 409, 491, 503
CviKI_1	RGCY	6 cut(s)	47, 142, 253, 409, 491, 503
DpnI	GATC	6 cut(s)	9, 218, 330, 374, 434, 479
DpnII	GATC	6 cut(s)	7, 216, 328, 372, 432, 477
DrdI	GACNNNNNNGTC	2 cut(s)	188, 350
DriI	GACNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	2 cut(s)	188, 350
Eam1105I	GACNNNNNGTC	1 cut(s)	454
EciI	GGCGGA	2 cut(s)	157, 193
Eco130I	CCWWGG	1 cut(s)	137
Eco72I	CACGTG	2 cut(s)	36, 61
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	373
FaiI	YATR	3 cut(s)	86, 112, 510
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	2 cut(s)	112, 314
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	171, 492
FokI	GGATG	3 cut(s)	60, 305, 371
Fsp4HI	GCNGC	2 cut(s)	171, 492
FspBI	CTAG	2 cut(s)	44, 50
GlaI	GCGC	2 cut(s)	281, 358
GluI	GCNGC	2 cut(s)	171, 492
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	142, 503
HapII	CCGG	3 cut(s)	174, 315, 504
HhaI	GCGC	2 cut(s)	282, 359
Hin1I	GRCGYC	1 cut(s)	351
Hin6I	GCGC	2 cut(s)	280, 357
HinP1I	GCGC	2 cut(s)	280, 357
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	3 cut(s)	174, 315, 504
HphI	GGTGA	3 cut(s)	277, 316, 472
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	343, 418, 460
Hpy188III	TCNNGA	4 cut(s)	179, 332, 370, 475
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	2 cut(s)	224, 293
HpyAV	CCTTC	3 cut(s)	268, 421, 476
HpyCH4III	ACNGT	2 cut(s)	289, 307
HpyCH4IV	ACGT	3 cut(s)	35, 60, 351
HpyCH4V	TGCA	5 cut(s)	39, 58, 163, 246, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 500
HpySE526I	ACGT	3 cut(s)	35, 60, 351
Hsp92I	GRCGYC	1 cut(s)	351
HspAI	GCGC	2 cut(s)	280, 357
Kzo9I	GATC	6 cut(s)	7, 216, 328, 372, 432, 477
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	6 cut(s)	187, 283, 328, 360, 480, 517
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	2 cut(s)	44, 50
MaeII	ACGT	3 cut(s)	35, 60, 351
MalI	GATC	6 cut(s)	9, 218, 330, 374, 434, 479
MboI	GATC	6 cut(s)	7, 216, 328, 372, 432, 477
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	3 cut(s)	65, 78, 93
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	3 cut(s)	44, 366, 441
MspA1I	CMGCKG	2 cut(s)	239, 491
MspI	CCGG	3 cut(s)	174, 315, 504
MvnI	CGCG	3 cut(s)	180, 280, 476
MwoI	GCNNNNNNNGC	2 cut(s)	279, 500
NdeII	GATC	6 cut(s)	7, 216, 328, 372, 432, 477
NruI	TCGCGA	2 cut(s)	180, 476
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 480
PflFI	GACNNNGTC	2 cut(s)	123, 305
PkrI	GCNGC	2 cut(s)	172, 493
PleI	GAGTC	1 cut(s)	443
PmaCI	CACGTG	2 cut(s)	36, 61
PmlI	CACGTG	2 cut(s)	36, 61
PpsI	GAGTC	1 cut(s)	443
Ppu21I	YACGTR	2 cut(s)	36, 61
PshAI	GACNNNNGTC	1 cut(s)	104
PspCI	CACGTG	2 cut(s)	36, 61
PspPI	GGNCC	2 cut(s)	141, 501
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	7
PsyI	GACNNNGTC	2 cut(s)	123, 305
PvuII	CAGCTG	1 cut(s)	491
RruI	TCGCGA	2 cut(s)	180, 476
SalI	GTCGAC	1 cut(s)	290
SatI	GCNGC	2 cut(s)	171, 492
Sau3AI	GATC	6 cut(s)	7, 216, 328, 372, 432, 477
Sau96I	GGNCC	2 cut(s)	141, 501
SchI	GAGTC	1 cut(s)	443
SfaNI	GCATC	1 cut(s)	327
Sse9I	AATT	3 cut(s)	65, 78, 93
SsiI	CCGC	6 cut(s)	168, 171, 204, 237, 363, 397
SspMI	CTAG	2 cut(s)	44, 50
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	289, 307
TaiI	ACGT	3 cut(s)	38, 63, 354
TaqI	TCGA	5 cut(s)	261, 291, 333, 371, 447
TasI	AATT	3 cut(s)	65, 78, 93
TauI	GCSGC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	58, 62, 139
TspGWI	ACGGA	1 cut(s)	178
Tth111I	GACNNNGTC	2 cut(s)	123, 305
XapI	RAATTY	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	2 cut(s)	44, 50
ZraI	GACGTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.