Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022618.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1357

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022618.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

caatccgccgccggccgctacatctccgtcatcgccaagtccgctgtcgaagagatcgtcgcctccgccttctgcaagaagcttgccttcgacctcatccgctccacgcgcctcaccgtcgacctctgggacaccgtctgcaccggcatcctcaccgatctcgacttccccgaccctgacgtcagtgccgccgcagtctcgatcctcgccgccatcccctcctaccgcctccctaagctcatctccgacaccaagaaggagatcaacaactgcttcgactcgccgtctgatagccttcggttcgcgatccccgagacggcggctgggccggatcggccagaacatgctcgactgctccgacgcagtttcgaaggtcgggttcgagtcggtagggcggtggagagtttcagggccacggtgtttccgattatgtatgcctttaaggctgtggcctccggctcagtcgaggtcataaggaagctatccaagtcttctggtggttctaatgcgactattgtggatagtaatgccgagaggttcgtcggagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

19.76

Weight (kDa)

8.85

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	183
AccBSI	CCGCTC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	2 cut(s)	109, 305
AclWI	GGATC	3 cut(s)	196, 301, 339
AcoI	YGGCCR	2 cut(s)	13, 335
AcyI	GRCGYC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	316
AhdI	GACNNNNNGTC	1 cut(s)	283
AluBI	AGCT	3 cut(s)	82, 238, 481
AluI	AGCT	3 cut(s)	82, 238, 481
Alw26I	GTCTC	2 cut(s)	202, 308
AlwI	GGATC	3 cut(s)	196, 301, 339
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	5 cut(s)	13, 326, 335, 411, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	326, 411
AsuHPI	GGTGA	2 cut(s)	106, 145
AsuII	TTCGAA	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	483
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	268, 333
BcoDI	GTCTC	2 cut(s)	202, 308
BglI	GCCNNNNNGGC	2 cut(s)	334, 443
BisI	GCNGC	6 cut(s)	9, 16, 189, 192, 210, 321
BlsI	GCNGC	6 cut(s)	10, 17, 190, 193, 211, 322
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	326, 411
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	2 cut(s)	11, 143
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	3 cut(s)	96, 147, 213
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	474
BseX3I	CGGCCG	1 cut(s)	13
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	124
Bsh1236I	CGCG	2 cut(s)	109, 305
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	5 cut(s)	15, 328, 337, 413, 452
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	4 cut(s)	12, 144, 329, 456
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	202, 308
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	15, 328, 337, 413, 452
BsoBI	CYCGRG	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	369
Bsp143I	GATC	6 cut(s)	54, 157, 201, 261, 306, 331
Bsp68I	TCGCGA	1 cut(s)	305
BspANI	GGCC	5 cut(s)	15, 328, 337, 413, 452
BspCNI	CTCAG	1 cut(s)	473
BspFNI	CGCG	2 cut(s)	109, 305
BspPI	GGATC	3 cut(s)	196, 301, 339
BspT104I	TTCGAA	1 cut(s)	369
BsrBI	CCGCTC	1 cut(s)	102
BsrFI	RCCGGY	2 cut(s)	11, 143
BssAI	RCCGGY	2 cut(s)	11, 143
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	6 cut(s)	54, 157, 201, 261, 306, 331
BssNI	GRCGYC	1 cut(s)	180
Bst4CI	ACNGT	3 cut(s)	118, 136, 418
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	13, 84
BstDEI	CTNAG	2 cut(s)	234, 460
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	3 cut(s)	96, 147, 213
BstFNI	CGCG	2 cut(s)	109, 305
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	6 cut(s)	57, 160, 204, 264, 309, 334
BstMAI	GTCTC	2 cut(s)	202, 308
BstMBI	GATC	6 cut(s)	54, 157, 201, 261, 306, 331
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 108, 334, 443
BstNSI	RCATGY	1 cut(s)	347
BstUI	CGCG	2 cut(s)	109, 305
BstV2I	GAAGAC	1 cut(s)	483
BstZI	CGGCCG	1 cut(s)	13
BsuRI	GGCC	5 cut(s)	15, 328, 337, 413, 452
BtgI	CCRYGG	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	96, 147, 213
BtsIMutI	CAGTG	1 cut(s)	190
BtuMI	TCGCGA	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	13, 84
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	2 cut(s)	11, 143
Cfr13I	GGNCC	2 cut(s)	326, 411
CseI	GACGC	1 cut(s)	369
CviAII	CATG	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	234, 460
DpnI	GATC	6 cut(s)	56, 159, 203, 263, 308, 333
DpnII	GATC	6 cut(s)	54, 157, 201, 261, 306, 331
DrdI	GACNNNNNNGTC	1 cut(s)	179
DriI	GACNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	2 cut(s)	13, 335
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	45
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	55
EclXI	CGGCCG	1 cut(s)	13
Eco52I	CGGCCG	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	311
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	1 cut(s)	347
FaiI	YATR	4 cut(s)	345, 431, 435, 473
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	9, 16, 189, 192, 210, 321
FokI	GGATG	3 cut(s)	83, 134, 200
Fsp4HI	GCNGC	6 cut(s)	9, 16, 189, 192, 210, 321
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	6 cut(s)	9, 16, 189, 192, 210, 321
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	5 cut(s)	15, 328, 337, 413, 452
HapII	CCGG	4 cut(s)	12, 144, 329, 456
HgaI	GACGC	1 cut(s)	369
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	278, 384
HpaII	CCGG	4 cut(s)	12, 144, 329, 456
HphI	GGTGA	2 cut(s)	106, 145
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	5 cut(s)	247, 289, 359, 426, 545
Hpy188III	TCNNGA	3 cut(s)	161, 199, 304
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	4 cut(s)	62, 122, 363, 545
HpyAV	CCTTC	5 cut(s)	79, 97, 250, 305, 365
HpyCH4III	ACNGT	3 cut(s)	118, 136, 418
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	75, 141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 108, 334, 443
HpyF3I	CTNAG	2 cut(s)	234, 460
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	1 cut(s)	109
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	6 cut(s)	54, 157, 201, 261, 306, 331
LmnI	GCTCC	2 cut(s)	107, 360
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	180
MalI	GATC	6 cut(s)	56, 159, 203, 263, 308, 333
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	6 cut(s)	54, 157, 201, 261, 306, 331
MboII	GAAGA	2 cut(s)	62, 483
MlyI	GAGTC	2 cut(s)	272, 393
MmeI	TCCRAC	3 cut(s)	270, 382, 523
MroNI	GCCGGC	1 cut(s)	11
MseI	TTAA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	4 cut(s)	12, 144, 329, 456
MvnI	CGCG	2 cut(s)	109, 305
MwoI	GCNNNNNNNGC	4 cut(s)	41, 108, 334, 443
NaeI	GCCGGC	1 cut(s)	13
NdeII	GATC	6 cut(s)	54, 157, 201, 261, 306, 331
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	347
NruI	TCGCGA	1 cut(s)	305
NspI	RCATGY	1 cut(s)	347
NspV	TTCGAA	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	5 cut(s)	54, 168, 309, 355, 422
PdiI	GCCGGC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	6 cut(s)	10, 17, 190, 193, 211, 322
PleI	GAGTC	2 cut(s)	272, 392
PpsI	GAGTC	2 cut(s)	272, 392
PspFI	CCCAGC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	326, 411
PsyI	GACNNNGTC	1 cut(s)	134
RruI	TCGCGA	1 cut(s)	305
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	6 cut(s)	9, 16, 189, 192, 210, 321
Sau3AI	GATC	6 cut(s)	54, 157, 201, 261, 306, 331
Sau96I	GGNCC	2 cut(s)	326, 411
SchI	GAGTC	2 cut(s)	272, 393
SetI	ASST	9 cut(s)	84, 96, 126, 183, 240, 376, 471, 483, 539
SfaNI	GCATC	1 cut(s)	156
SfiI	GGCCNNNNNGGCC	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	118, 136, 418
TaiI	ACGT	1 cut(s)	183
TauI	GCSGC	6 cut(s)	11, 18, 191, 194, 212, 323
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	190
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	134
XceI	RCATGY	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.