Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8199840.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 497

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8199840.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

caatccgccgccggccgcgacatctccgtcatcgccaagtccgccgtcgaagagatcgtcgccacccccgcctccgccgtctgcaagaagctcacctttgacctcatccgctccacgcgcctcaccgtcgacctctgggacaccgtctgcaccggcatcctcaccgatctcgacttccccgaccctgacgccagcgtcgccgccatctcgatcctctccgccatcccctcctaccgcctccccaagctcatctccgacaccaagaaggagatcaacaactgcttcgactcaccgtctgataaccttcagttcgcgatcaccgagacgatggggtgcattctcgcacgtgacaatctcgtgactttgtgtgagaacaatgtcaatctgctggataaggtcttcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.59

Weight (kDa)

4.48

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	26, 194
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	3 cut(s)	18, 118, 314
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	13
AcuI	CTGAAG	2 cut(s)	290, 385
AcvI	CACGTG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	189
AhdI	GACNNNNNGTC	1 cut(s)	292
AluBI	AGCT	3 cut(s)	91, 247, 405
AluI	AGCT	3 cut(s)	91, 247, 405
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	13
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	5 cut(s)	85, 115, 154, 282, 310
BauI	CACGAG	1 cut(s)	356
BbrPI	CACGTG	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	391
BccI	CCATC	3 cut(s)	212, 230, 322
BceAI	ACGGC	2 cut(s)	29, 62
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	406
BisI	GCNGC	3 cut(s)	9, 16, 201
BlsI	GCNGC	3 cut(s)	10, 17, 202
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	189
Bse118I	RCCGGY	2 cut(s)	11, 152
BseGI	GGATG	3 cut(s)	105, 156, 222
BseX3I	CGGCCG	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	3 cut(s)	18, 118, 314
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	12, 153
BslFI	GGGAC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	15
Bsp143I	GATC	5 cut(s)	54, 166, 210, 270, 315
Bsp68I	TCGCGA	1 cut(s)	314
BspANI	GGCC	1 cut(s)	15
BspFNI	CGCG	3 cut(s)	18, 118, 314
BspPI	GGATC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	111
BsrFI	RCCGGY	2 cut(s)	11, 152
BssAI	RCCGGY	2 cut(s)	11, 152
BssMI	GATC	5 cut(s)	54, 166, 210, 270, 315
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	356
Bst2BI	CACGAG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	127, 145, 294
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	13, 193
BstF5I	GGATG	3 cut(s)	105, 156, 222
BstFNI	CGCG	3 cut(s)	18, 118, 314
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	5 cut(s)	57, 169, 213, 273, 318
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	5 cut(s)	54, 166, 210, 270, 315
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 68, 117, 197
BstUI	CGCG	3 cut(s)	18, 118, 314
BstV2I	GAAGAC	1 cut(s)	391
BstZI	CGGCCG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	105, 156, 222
BtuMI	TCGCGA	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	13, 193
CfoI	GCGC	1 cut(s)	120
Cfr10I	RCCGGY	2 cut(s)	11, 152
CseI	GACGC	2 cut(s)	184, 197
CviJI	RGCY	4 cut(s)	15, 91, 247, 405
CviKI_1	RGCY	4 cut(s)	15, 91, 247, 405
DpnI	GATC	5 cut(s)	56, 168, 212, 272, 317
DpnII	GATC	5 cut(s)	54, 166, 210, 270, 315
DrdI	GACNNNNNNGTC	2 cut(s)	26, 194
DriI	GACNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	2 cut(s)	26, 194
EaeI	YGGCCR	1 cut(s)	13
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	45
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	3 cut(s)	31, 64, 208
EclXI	CGGCCG	1 cut(s)	13
Eco52I	CGGCCG	1 cut(s)	13
Eco57I	CTGAAG	2 cut(s)	290, 385
Eco72I	CACGTG	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	317
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	152
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	9, 16, 201
FokI	GGATG	3 cut(s)	92, 143, 209
Fsp4HI	GCNGC	3 cut(s)	9, 16, 201
FspBI	CTAG	1 cut(s)	406
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	3 cut(s)	9, 16, 201
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	12, 153
HgaI	GACGC	2 cut(s)	184, 197
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	189
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	2 cut(s)	12, 153
HphI	GGTGA	5 cut(s)	85, 115, 154, 282, 310
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	256, 298
Hpy188III	TCNNGA	4 cut(s)	170, 208, 313, 358
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	4 cut(s)	50, 62, 131, 200
HpyAV	CCTTC	2 cut(s)	259, 314
HpyCH4III	ACNGT	3 cut(s)	127, 145, 294
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	3 cut(s)	84, 150, 336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 68, 117, 197
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	1 cut(s)	189
HspAI	GCGC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	54, 166, 210, 270, 315
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	25, 121, 166, 198, 205, 374
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	406
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	347, 358
MalI	GATC	5 cut(s)	56, 168, 212, 272, 317
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	5 cut(s)	54, 166, 210, 270, 315
MboII	GAAGA	2 cut(s)	62, 391
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	8 cut(s)	82, 113, 131, 143, 170, 224, 238, 248
MroNI	GCCGGC	1 cut(s)	11
MspI	CCGG	2 cut(s)	12, 153
Mva1269I	GAATGC	1 cut(s)	336
MvnI	CGCG	3 cut(s)	18, 118, 314
MwoI	GCNNNNNNNGC	4 cut(s)	41, 68, 117, 197
NaeI	GCCGGC	1 cut(s)	13
NdeII	GATC	5 cut(s)	54, 166, 210, 270, 315
NgoMIV	GCCGGC	1 cut(s)	11
NmuCI	GTSAC	2 cut(s)	347, 358
NruI	TCGCGA	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 177, 318
PctI	GAATGC	1 cut(s)	336
PdiI	GCCGGC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	10, 17, 202
PleI	GAGTC	1 cut(s)	281
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	347
PspCI	CACGTG	1 cut(s)	347
PsyI	GACNNNGTC	1 cut(s)	143
RruI	TCGCGA	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	3 cut(s)	9, 16, 201
Sau3AI	GATC	5 cut(s)	54, 166, 210, 270, 315
SchI	GAGTC	1 cut(s)	281
SetI	ASST	9 cut(s)	93, 98, 105, 135, 249, 306, 349, 399, 407
SfaNI	GCATC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	127, 145, 294
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	5 cut(s)	48, 129, 171, 209, 285
TauI	GCSGC	3 cut(s)	11, 18, 203
TseFI	GTSAC	2 cut(s)	347, 358
Tsp45I	GTSAC	2 cut(s)	347, 358
TspGWI	ACGGA	1 cut(s)	16
Tth111I	GACNNNGTC	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.