Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

15497916 .. 15500090

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007294

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAACGTAACTGATGTTCAATCCGCCGCCAGCTGCGACATCTCCGTCATCGCCAAGTCCGCCGTCGAAGAGATCGTCGCCTCCCCCGCCTCCGCCTTCTGCAAGAAGCTTGCCTTCGATCTCATCCGCTCCACGCGCCTCACCGCCGACCTCTGGGACACTGTCTGCACCGGCATCCTCTCCGATCTCGACTTCCCTGACCCTGACGTCAGCGCCGCCATCCCCTCCTACCGCCTCCCCAAGCTCATCTCCGACACCAAGAAGGAGATCAACAACTGCTTCGACTCGCCGTCTGATAACCTCTGGTTCGCGATCACCGAGACGATGGGGTGCATTCTCGCACGTGACGATCTCGTGACTCTGTGTGAGAACAATGTCAATCTACTGGATAAGGTCTTCGGCTGGTGGGGCCGGATCGGCCAGAACATGCTCGACTGTTCTGACGCCGTTTCGAAGGTCGGGTTCGAGTCGGTGGGGCGGTTGTTTCAGGAGTTCGATACCAAAAGGATGAGCAGACTCGCCCGAGATAAGTTGATAGATAGTGAGAATTCGCTTGCGATTCGATCCAATTGGAAGAAGCGGAGTGCTCTAATGGCGAGGTCGTTGGTTTTGCCGGTGGAGAGTTTCAGGGCCACGGTGTTTCCGATTGTGTATGCCGTTAAGGCTGTGGCTTCCGGCTCTGTCGAGGTCATAAGGAAGCTATCCAAGTCTTATGGTGGTTCTAATGCGACTATTGTGGATAGTAATGCCGAGAGGTTCGTCGGAGTTTCGAATGTGGTGACACATTTGGTGCTCTTTTTGGCCTCGTCTTTGGATCCAGCTTTGATTTTTGAGGTGGGGATTGACATGTTGTACTTGGCTGATGTTCCTGGTGGGAAGCCTGAGTGGGCTTCGCAATCCATTATTGCAATTCTCACACTTTGGGATAGGCAAGAGTTTGCTTCAGCTAGGGAAAGTACTGTTGTTACAAATCTTCATCTTCTCGATCTTGATATGCAGCTCTACCATATGCAGTCAGCTTTGGTCATTGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

37.98

Weight (kDa)

4.92

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	44, 206
AatII	GACGTC	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	129
AccII	CGCG	2 cut(s)	136, 311
AclWI	GGATC	4 cut(s)	422, 558, 809, 822
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	927
AcvI	CACGTG	1 cut(s)	344
AcyI	GRCGYC	2 cut(s)	207, 444
AfaI	GTAC	2 cut(s)	854, 958
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	1 cut(s)	20
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	868
AluBI	AGCT	8 cut(s)	33, 109, 244, 700, 821, 947, 1000, 1019
AluI	AGCT	8 cut(s)	33, 109, 244, 700, 821, 947, 1000, 1019
Alw21I	GWGCWC	2 cut(s)	589, 795
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	4 cut(s)	422, 558, 809, 822
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	4 cut(s)	409, 418, 630, 801
ApeKI	GCWGC	2 cut(s)	33, 997
ApoI	RAATTY	1 cut(s)	547
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspLEI	GCGC	2 cut(s)	138, 215
AspS9I	GGNCC	2 cut(s)	409, 630
AsuHPI	GGTGA	3 cut(s)	133, 307, 790
AsuII	TTCGAA	2 cut(s)	452, 770
AvaI	CYCGRG	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	814
BauI	CACGAG	1 cut(s)	353
BbrPI	CACGTG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	2 cut(s)	589, 795
BbvI	GCAGC	2 cut(s)	20, 1009
BccI	CCATC	2 cut(s)	227, 319
BceAI	ACGGC	4 cut(s)	47, 274, 431, 641
BciT130I	CCWGG	1 cut(s)	870
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	948
BfoI	RGCGCY	1 cut(s)	216
BglI	GCCNNNNNGGC	2 cut(s)	417, 662
BisI	GCNGC	4 cut(s)	27, 34, 216, 998
BlsI	GCNGC	4 cut(s)	28, 35, 217, 999
BmcAI	AGTACT	1 cut(s)	958
Bme1390I	CCNGG	1 cut(s)	870
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	409, 630
BmiI	GGNNCC	2 cut(s)	410, 816
BmrFI	CCNGG	1 cut(s)	870
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	388
Bpu14I	TTCGAA	2 cut(s)	452, 770
BsaAI	YACGTR	1 cut(s)	344
BsaHI	GRCGYC	2 cut(s)	207, 444
BsaJI	CCNNGG	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	2 cut(s)	170, 613
Bse1I	ACTGG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	870
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	4 cut(s)	123, 174, 219, 513
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	20, 1009
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	136, 311
BshFI	GGCC	4 cut(s)	411, 420, 632, 803
BsiHKAI	GWGCWC	2 cut(s)	589, 795
BsiHKCI	CYCGRG	1 cut(s)	522
BsiSI	CCGG	4 cut(s)	171, 412, 614, 675
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	4 cut(s)	411, 420, 632, 803
BsoBI	CYCGRG	1 cut(s)	522
Bsp119I	TTCGAA	2 cut(s)	452, 770
Bsp1286I	GDGCHC	2 cut(s)	589, 795
Bsp68I	TCGCGA	1 cut(s)	311
BspANI	GGCC	4 cut(s)	411, 420, 632, 803
BspCNI	CTCAG	1 cut(s)	874
BspFNI	CGCG	2 cut(s)	136, 311
BspLI	GGNNCC	2 cut(s)	410, 816
BspPI	GGATC	4 cut(s)	422, 558, 809, 822
BspT104I	TTCGAA	2 cut(s)	452, 770
BsrBI	CCGCTC	1 cut(s)	129
BsrFI	RCCGGY	2 cut(s)	170, 613
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	2 cut(s)	170, 613
BssECI	CCNNGG	1 cut(s)	633
BssNI	GRCGYC	2 cut(s)	207, 444
BssSI	CACGAG	1 cut(s)	353
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	870
Bst4CI	ACNGT	4 cut(s)	163, 437, 637, 961
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	2 cut(s)	207, 444
BstBAI	YACGTR	1 cut(s)	344
BstBI	TTCGAA	2 cut(s)	452, 770
BstC8I	GCNNGC	3 cut(s)	31, 111, 555
BstDEI	CTNAG	1 cut(s)	882
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	4 cut(s)	123, 174, 219, 513
BstFNI	CGCG	2 cut(s)	136, 311
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	138, 215
BstMAI	GTCTC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 86, 135, 408, 417, 593, 662
BstNI	CCWGG	1 cut(s)	870
BstNSI	RCATGY	2 cut(s)	430, 850
BstSCI	CCNGG	1 cut(s)	868
BstUI	CGCG	2 cut(s)	136, 311
BstV1I	GCAGC	2 cut(s)	20, 1009
BstV2I	GAAGAC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	4 cut(s)	411, 420, 632, 803
BtgI	CCRYGG	1 cut(s)	633
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	4 cut(s)	123, 174, 219, 513
BtsIMutI	CAGTG	1 cut(s)	159
BtuMI	TCGCGA	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	31, 111, 555
CfoI	GCGC	2 cut(s)	138, 215
Cfr10I	RCCGGY	2 cut(s)	170, 613
Cfr13I	GGNCC	2 cut(s)	409, 630
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	853, 957
CviAII	CATG	2 cut(s)	427, 847
CviQI	GTAC	2 cut(s)	853, 957
DdeI	CTNAG	1 cut(s)	882
DrdI	GACNNNNNNGTC	2 cut(s)	44, 206
DriI	GACNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	2 cut(s)	44, 206
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	63
EciI	GGCGGA	3 cut(s)	13, 49, 82
Eco57I	CTGAAG	1 cut(s)	927
Eco72I	CACGTG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	868
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	2 cut(s)	430, 850
FaiI	YATR	8 cut(s)	428, 654, 692, 714, 848, 995, 1008, 1010
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	426, 846
FauI	CCCGC	1 cut(s)	94
FauNDI	CATATG	1 cut(s)	1008
Fnu4HI	GCNGC	4 cut(s)	27, 34, 216, 998
FokI	GGATG	4 cut(s)	110, 161, 206, 520
Fsp4HI	GCNGC	4 cut(s)	27, 34, 216, 998
FspBI	CTAG	1 cut(s)	948
GlaI	GCGC	2 cut(s)	137, 214
GluI	GCNGC	4 cut(s)	27, 34, 216, 998
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	4 cut(s)	411, 420, 632, 803
HapII	CCGG	4 cut(s)	171, 412, 614, 675
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	2 cut(s)	138, 215
Hin1I	GRCGYC	2 cut(s)	207, 444
Hin1II	CATG	2 cut(s)	430, 850
Hin6I	GCGC	2 cut(s)	136, 213
HinP1I	GCGC	2 cut(s)	136, 213
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	5 cut(s)	284, 358, 467, 516, 559
HpaII	CCGG	4 cut(s)	171, 412, 614, 675
HphI	GGTGA	3 cut(s)	133, 307, 790
Hpy188I	TCNGA	6 cut(s)	184, 253, 295, 442, 645, 764
Hpy188III	TCNNGA	6 cut(s)	188, 310, 355, 488, 983, 989
Hpy99I	CGWCG	3 cut(s)	68, 80, 764
HpyAV	CCTTC	4 cut(s)	106, 124, 256, 448
HpyCH4III	ACNGT	4 cut(s)	163, 437, 637, 961
HpyCH4IV	ACGT	3 cut(s)	6, 207, 343
HpyCH4V	TGCA	6 cut(s)	102, 168, 333, 908, 997, 1012
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 86, 135, 408, 417, 593, 662
HpyF3I	CTNAG	1 cut(s)	882
HpySE526I	ACGT	3 cut(s)	6, 207, 343
Hsp92I	GRCGYC	2 cut(s)	207, 444
Hsp92II	CATG	2 cut(s)	430, 850
HspAI	GCGC	2 cut(s)	136, 213
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	2 cut(s)	20, 1009
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	948
MaeII	ACGT	3 cut(s)	6, 207, 343
MaeIII	GTNAC	5 cut(s)	7, 344, 355, 778, 964
MbiI	CCGCTC	1 cut(s)	129
MboII	GAAGA	5 cut(s)	80, 388, 586, 965, 971
MfeI	CAATTG	1 cut(s)	568
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	589, 795
MluCI	AATT	3 cut(s)	547, 568, 909
MlyI	GAGTC	4 cut(s)	278, 352, 476, 510
MmeI	TCCRAC	2 cut(s)	276, 742
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	1 cut(s)	1031
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	4 cut(s)	171, 412, 614, 675
MspR9I	CCNGG	1 cut(s)	870
MunI	CAATTG	1 cut(s)	568
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	870
MvnI	CGCG	2 cut(s)	136, 311
MwoI	GCNNNNNNNGC	7 cut(s)	59, 86, 135, 408, 417, 593, 662
NdeI	CATATG	1 cut(s)	1008
NlaIII	CATG	2 cut(s)	430, 850
NlaIV	GGNNCC	2 cut(s)	410, 816
NmeAIII	GCCGAG	1 cut(s)	775
NmuCI	GTSAC	3 cut(s)	344, 355, 778
NruI	TCGCGA	1 cut(s)	311
NspI	RCATGY	2 cut(s)	430, 850
NspV	TTCGAA	2 cut(s)	452, 770
PciI	ACATGT	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 315, 345, 641
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	559
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	28, 35, 217, 999
PleI	GAGTC	4 cut(s)	278, 352, 475, 510
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	4 cut(s)	278, 352, 475, 510
Ppu21I	YACGTR	1 cut(s)	344
PscI	ACATGT	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	868
PspCI	CACGTG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	868
PspN4I	GGNNCC	2 cut(s)	410, 816
PspPI	GGNCC	2 cut(s)	409, 630
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	814
PsyI	GACNNNGTC	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	33
RruI	TCGCGA	1 cut(s)	311
RsaI	GTAC	2 cut(s)	854, 958
RsaNI	GTAC	2 cut(s)	853, 957
RseI	CAYNNNNRTG	1 cut(s)	1031
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	4 cut(s)	27, 34, 216, 998
Sau96I	GGNCC	2 cut(s)	409, 630
ScaI	AGTACT	1 cut(s)	958
SchI	GAGTC	4 cut(s)	278, 352, 476, 510
ScrFI	CCNGG	1 cut(s)	870
SduI	GDGCHC	2 cut(s)	589, 795
SfaNI	GCATC	1 cut(s)	183
SfiI	GGCCNNNNNGGCC	1 cut(s)	417
SfuI	TTCGAA	2 cut(s)	452, 770
SmiMI	CAYNNNNRTG	1 cut(s)	1031
Sse9I	AATT	3 cut(s)	547, 568, 909
SspMI	CTAG	1 cut(s)	948
StyD4I	CCNGG	1 cut(s)	868
TaaI	ACNGT	4 cut(s)	163, 437, 637, 961
TaiI	ACGT	3 cut(s)	9, 210, 346
TasI	AATT	3 cut(s)	547, 568, 909
TatI	WGTACW	2 cut(s)	852, 956
TauI	GCSGC	2 cut(s)	29, 218
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	3 cut(s)	344, 355, 778
TseI	GCWGC	2 cut(s)	33, 997
Tsp45I	GTSAC	3 cut(s)	344, 355, 778
TspDTI	ATGAA	2 cut(s)	17, 965
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	547
XceI	RCATGY	2 cut(s)	430, 850
XspI	CTAG	1 cut(s)	948
ZraI	GACGTC	1 cut(s)	208
ZrmI	AGTACT	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.