Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

24176038 .. 24197617

Gene Structure 21580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG209300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCTCGACGGCTCCGACGCCATTTCGAAGGTCGGGTTCGAGTCGGTGGGGCGGATGTTTCAGGAGTTCGATACCAAAAGGATGAGCAGACTCGCCGGAGATAAGTTGATAGATAGTGAGAATTCGCTTGCGATTCGATCCAATTGGGTCTCTTCAATGGTGGACTTCGTCTGGAAGAAGCGGAGTGCTCTAATGGCGAGGTCGTTGGTTTTGTCAGTGGAGAGTTTCAGGGCCACGGTGTTTCCGATTGTGTATGCCGTTATGGCTGTTGCCTCCAGCTCCGTCGAGGTCATAAGGAAGCTATCCAAGTCTTCTGGTGGTTCTAATGCGATTATTGTGGATAATCATGCCGAGAGGTTCGTCGGAGTTTCGCATTTGGTGCTCTTTTTGGCCTGGTCTTTGGATCCAGCTTTGATTTTTGAGGTGGGGATTGACATGTTATACTTGGCTGATGTTCCTGGTGGGAAGCCTGAGTGGGCTTCGCAATCCATTATTGCAATTCTCACACTTTGGGATAGGCAAGAGTTTGCTTCAGCTAGGGAAAGTATTGTTAGAGCTGTTGTTACAAATCTTCATCTTCTCGATCTTTATATGCAGCTAGAGGGTTCTGGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.57

Weight (kDa)

5.64

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	52, 181
AclWI	GGATC	3 cut(s)	132, 398, 411
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	18
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	2 cut(s)	392, 457
AluBI	AGCT	6 cut(s)	279, 301, 410, 536, 557, 598
AluI	AGCT	6 cut(s)	279, 301, 410, 536, 557, 598
Alw21I	GWGCWC	2 cut(s)	190, 384
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	3 cut(s)	132, 398, 411
AoxI	GGCC	2 cut(s)	231, 390
ApeKI	GCWGC	1 cut(s)	595
ApoI	RAATTY	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	231
AsuII	TTCGAA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	190, 384
BbvI	GCAGC	1 cut(s)	607
BceAI	ACGGC	2 cut(s)	25, 242
BciT130I	CCWGG	2 cut(s)	394, 459
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	537, 599
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
Bme1390I	CCNGG	2 cut(s)	394, 459
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	13, 405
BmrFI	CCNGG	2 cut(s)	394, 459
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	259
Bpu14I	TTCGAA	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	394, 459
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	60, 87
BseMII	CTCAG	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	607
BshFI	GGCC	2 cut(s)	233, 392
BsiHKAI	GWGCWC	2 cut(s)	190, 384
BsiSI	CCGG	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	233, 392
Bso31I	GGTCTC	1 cut(s)	154
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	190, 384
Bsp143I	GATC	3 cut(s)	137, 403, 583
BspACI	CCGC	2 cut(s)	52, 181
BspANI	GGCC	2 cut(s)	233, 392
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	13, 405
BspPI	GGATC	3 cut(s)	132, 398, 411
BspT104I	TTCGAA	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	3 cut(s)	137, 403, 583
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	394, 459
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	60, 87
BstKTI	GATC	3 cut(s)	140, 406, 586
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	3 cut(s)	137, 403, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 263, 379
BstNI	CCWGG	2 cut(s)	394, 459
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	392, 457
BstV1I	GCAGC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	233, 392
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	60, 87
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	1 cut(s)	26
CviAII	CATG	2 cut(s)	347, 436
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	3 cut(s)	139, 405, 585
DpnII	GATC	3 cut(s)	137, 403, 583
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	392, 457
FaeI	CATG	2 cut(s)	350, 439
FaiI	YATR	8 cut(s)	255, 263, 293, 348, 437, 442, 591, 593
FatI	CATG	2 cut(s)	346, 435
Fnu4HI	GCNGC	1 cut(s)	596
FokI	GGATG	2 cut(s)	67, 94
Fsp4HI	GCNGC	1 cut(s)	596
FspBI	CTAG	2 cut(s)	537, 599
GluI	GCNGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	233, 392
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	350, 439
HinfI	GANTC	3 cut(s)	41, 90, 133
HpaII	CCGG	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	16, 246, 365
Hpy188III	TCNNGA	4 cut(s)	62, 172, 581, 609
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	4 cut(s)	11, 20, 287, 365
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	497, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 263, 379
HpyF3I	CTNAG	1 cut(s)	471
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	350, 439
Kzo9I	GATC	3 cut(s)	137, 403, 583
LmnI	GCTCC	2 cut(s)	17, 284
Lsp1109I	GCAGC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	537, 599
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	3 cut(s)	139, 405, 585
MboI	GATC	3 cut(s)	137, 403, 583
MboII	GAAGA	5 cut(s)	144, 187, 303, 563, 569
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	190, 384
MluCI	AATT	3 cut(s)	121, 142, 498
MlyI	GAGTC	2 cut(s)	50, 84
MmeI	TCCRAC	2 cut(s)	39, 343
MnlI	CCTC	6 cut(s)	192, 280, 283, 348, 415, 595
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	394, 459
MunI	CAATTG	1 cut(s)	142
MvaI	CCWGG	2 cut(s)	394, 459
MwoI	GCNNNNNNNGC	3 cut(s)	194, 263, 379
NdeII	GATC	3 cut(s)	137, 403, 583
NlaIII	CATG	2 cut(s)	350, 439
NlaIV	GGNNCC	2 cut(s)	13, 405
NmeAIII	GCCGAG	1 cut(s)	376
NspI	RCATGY	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	26
PciI	ACATGT	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 242
PfeI	GAWTC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	597
PleI	GAGTC	2 cut(s)	49, 84
PpsI	GAGTC	2 cut(s)	49, 84
PscI	ACATGT	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	392, 457
PspGI	CCWGG	2 cut(s)	392, 457
PspN4I	GGNNCC	2 cut(s)	13, 405
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	167
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	3 cut(s)	137, 403, 583
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	2 cut(s)	50, 84
ScrFI	CCNGG	2 cut(s)	394, 459
SduI	GDGCHC	2 cut(s)	190, 384
SfuI	TTCGAA	1 cut(s)	26
Sse9I	AATT	3 cut(s)	121, 142, 498
SsiI	CCGC	2 cut(s)	52, 181
SspMI	CTAG	2 cut(s)	537, 599
StyD4I	CCNGG	2 cut(s)	392, 457
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	7 cut(s)	6, 26, 39, 69, 136, 285, 582
TasI	AATT	3 cut(s)	121, 142, 498
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	1 cut(s)	595
TspDTI	ATGAA	1 cut(s)	563
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	2 cut(s)	537, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.