Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006325.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

1421 .. 2585

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006325.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgagcagactcgccggagataagttgatagatagtgagaatttgcttgcgattcgatctaattgggtctcttcaatggtggacttcgtctggaagaagcggagtgctctaatggcgagggctgtggcctccggctccgtcgaggtcataaggaagctatccaagtcttctggtggttctaatgcgagagctttgatttttgaggtggggattgatatgttgtacttggctgatgttcctggtgggaagcctgagtgggcttcgcaatccattattgcaattctcacactttgggataggcaagagtttgcttcagctagggaaagtattgttagagctgttgttacaaatcttcatcttctcgatcttcatatgcagctggggcgcttggggtcactgttggaggagttgacgagatcttgtttctgtttcagacgacggaggcaacatgagcatcatgatagagtcaaatggcgacttaaatgcaggggtccgttacattttgctttccaggggcagaggggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.84

Weight (kDa)

10.26

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	2 cut(s)	238, 510
AluBI	AGCT	5 cut(s)	157, 191, 317, 338, 379
AluI	AGCT	5 cut(s)	157, 191, 317, 338, 379
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	73
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	465, 499
BciT130I	CCWGG	2 cut(s)	240, 512
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	388
BglII	AGATCT	1 cut(s)	416
BisI	GCNGC	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	378
Bme1390I	CCNGG	2 cut(s)	240, 512
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	136, 492
BmrFI	CCNGG	2 cut(s)	240, 512
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	511
BseBI	CCWGG	2 cut(s)	240, 512
BseDI	CCNNGG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	379
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	15, 132
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	56, 364, 416
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	136, 492
BspTNI	GGTCTC	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	3 cut(s)	56, 364, 416
Bst2UI	CCWGG	2 cut(s)	240, 512
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	3 cut(s)	59, 367, 419
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	56, 364, 416
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 382, 451
BstNI	CCWGG	2 cut(s)	240, 512
BstSCI	CCNGG	2 cut(s)	238, 510
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	449, 458
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	58, 366, 418
DpnII	GATC	3 cut(s)	56, 364, 416
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	238, 510
FaeI	CATG	2 cut(s)	452, 461
FaiI	YATR	6 cut(s)	149, 218, 372, 374, 450, 459
FatI	CATG	2 cut(s)	448, 457
FauNDI	CATATG	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	377
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	377
GsaI	CCCAGC	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	2 cut(s)	15, 132
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	452, 461
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	3 cut(s)	9, 52, 465
HpaII	CCGG	2 cut(s)	15, 132
Hpy166II	GTNNAC	2 cut(s)	82, 411
Hpy188I	TCNGA	1 cut(s)	434
Hpy188III	TCNNGA	3 cut(s)	91, 362, 458
Hpy8I	GTNNAC	2 cut(s)	82, 411
Hpy99I	CGWCG	2 cut(s)	143, 441
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	278, 376, 486
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 382, 451
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	452, 461
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	56, 364, 416
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	343, 393, 495
MalI	GATC	3 cut(s)	58, 366, 418
MboI	GATC	3 cut(s)	56, 364, 416
MboII	GAAGA	6 cut(s)	63, 106, 159, 344, 350, 359
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	40, 61, 279
MlyI	GAGTC	2 cut(s)	3, 474
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	7 cut(s)	111, 136, 139, 196, 397, 435, 513
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	2 cut(s)	15, 132
MspR9I	CCNGG	2 cut(s)	240, 512
MvaI	CCWGG	2 cut(s)	240, 512
MwoI	GCNNNNNNNGC	3 cut(s)	113, 382, 451
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	3 cut(s)	56, 364, 416
NlaIII	CATG	2 cut(s)	452, 461
NlaIV	GGNNCC	2 cut(s)	136, 492
NmuCI	GTSAC	1 cut(s)	393
PagI	TCATGA	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	378
PleI	GAGTC	2 cut(s)	3, 473
PpsI	GAGTC	2 cut(s)	3, 473
Psp6I	CCWGG	2 cut(s)	238, 510
PspFI	CCCAGC	1 cut(s)	379
PspGI	CCWGG	2 cut(s)	238, 510
PspN4I	GGNNCC	2 cut(s)	136, 492
PspPI	GGNCC	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	416
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	1 cut(s)	377
Sau3AI	GATC	3 cut(s)	56, 364, 416
Sau96I	GGNCC	1 cut(s)	491
SchI	GAGTC	2 cut(s)	3, 474
ScrFI	CCNGG	2 cut(s)	240, 512
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	147, 159, 193, 207, 319, 340, 381
SfaNI	GCATC	1 cut(s)	463
SinI	GGWCC	1 cut(s)	491
Sse9I	AATT	3 cut(s)	40, 61, 279
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	238, 510
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	3 cut(s)	55, 141, 363
TasI	AATT	3 cut(s)	40, 61, 279
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	2 cut(s)	344, 359
TspGWI	ACGGA	3 cut(s)	127, 454, 483
TspRI	CASTG	1 cut(s)	402
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	1 cut(s)	40
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.