Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010370.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

12154 .. 14407

Gene Structure 2254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010370.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggtcttgccagttgcgcaatcctccgccggtcacgacatctccgtcatcggcaagtccgccgtcgaagagatcgtcgcctcccccgccttcgccgtctgcaagaagctcgccttcgacctcatccgctccacgcgcctcaccgtcgacctctgggacaccgtctgcaccggcatcctcaccgatctcgacttccccgaccctgacgtcagcgccgccgccgtctcgatccttgccgccatcccctcctaccgcctccccaagctcatctccgacaccaagaaggagatcaacaactgcttcgactcgccgtctgataaccttcggttcgcgatcaccgagacagctgctggtagggccggatatggtcaatctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.34

Weight (kDa)

4.78

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	44, 206
AatII	GACGTC	1 cut(s)	210
Acc16I	TGCGCA	1 cut(s)	18
AccBSI	CCGCTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	136, 332
AciI	CCGC	8 cut(s)	27, 60, 87, 127, 216, 219, 237, 253
AclWI	GGATC	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	207
AhdI	GACNNNNNGTC	1 cut(s)	310
AluBI	AGCT	3 cut(s)	109, 265, 347
AluI	AGCT	3 cut(s)	109, 265, 347
Alw26I	GTCTC	2 cut(s)	229, 335
AlwI	GGATC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspLEI	GCGC	3 cut(s)	19, 138, 215
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	133, 172, 328
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	4 cut(s)	47, 80, 206, 295
BcgI	CGANNNNNNTGC	4 cut(s)	91, 125, 329, 363
BcoDI	GTCTC	2 cut(s)	229, 335
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	4 cut(s)	216, 219, 237, 348
BlsI	GCNGC	4 cut(s)	217, 220, 238, 349
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	357
BmsI	GCATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse118I	RCCGGY	2 cut(s)	29, 170
Bse1I	ACTGG	1 cut(s)	11
BseGI	GGATG	3 cut(s)	123, 174, 240
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	136, 332
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	30, 171, 360
BslFI	GGGAC	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	229, 335
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	359
Bsp143I	GATC	5 cut(s)	72, 184, 228, 288, 333
Bsp68I	TCGCGA	1 cut(s)	332
BspACI	CCGC	8 cut(s)	27, 60, 87, 127, 216, 219, 237, 253
BspANI	GGCC	1 cut(s)	359
BspFNI	CGCG	2 cut(s)	136, 332
BspPI	GGATC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	129
BsrFI	RCCGGY	2 cut(s)	29, 170
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	2 cut(s)	29, 170
BssMI	GATC	5 cut(s)	72, 184, 228, 288, 333
BssNI	GRCGYC	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	145, 163
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	111
BstF5I	GGATG	3 cut(s)	123, 174, 240
BstFNI	CGCG	2 cut(s)	136, 332
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	3 cut(s)	19, 138, 215
BstKTI	GATC	5 cut(s)	75, 187, 231, 291, 336
BstMAI	GTCTC	2 cut(s)	229, 335
BstMBI	GATC	5 cut(s)	72, 184, 228, 288, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 86, 135, 356
BstUI	CGCG	2 cut(s)	136, 332
BstV1I	GCAGC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	123, 174, 240
BtuMI	TCGCGA	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	3 cut(s)	19, 138, 215
Cfr10I	RCCGGY	2 cut(s)	29, 170
Cfr13I	GGNCC	1 cut(s)	357
CviJI	RGCY	4 cut(s)	109, 265, 347, 359
CviKI_1	RGCY	4 cut(s)	109, 265, 347, 359
DpnI	GATC	5 cut(s)	74, 186, 230, 290, 335
DpnII	GATC	5 cut(s)	72, 184, 228, 288, 333
DrdI	GACNNNNNNGTC	2 cut(s)	44, 206
DriI	GACNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	2 cut(s)	44, 206
Eam1104I	CTCTTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	63
EciI	GGCGGA	2 cut(s)	16, 49
Esp3I	CGTCTC	1 cut(s)	229
FaiI	YATR	1 cut(s)	366
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	1 cut(s)	170
FauI	CCCGC	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	216, 219, 237, 348
FokI	GGATG	3 cut(s)	110, 161, 227
Fsp4HI	GCNGC	4 cut(s)	216, 219, 237, 348
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	3 cut(s)	18, 137, 214
GluI	GCNGC	4 cut(s)	216, 219, 237, 348
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	3 cut(s)	30, 171, 360
HhaI	GCGC	3 cut(s)	19, 138, 215
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	3 cut(s)	17, 136, 213
HinP1I	GCGC	3 cut(s)	17, 136, 213
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	3 cut(s)	30, 171, 360
HphI	GGTGA	3 cut(s)	133, 172, 328
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	274, 316
Hpy188III	TCNNGA	4 cut(s)	35, 188, 226, 331
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	3 cut(s)	68, 80, 149
HpyAV	CCTTC	4 cut(s)	100, 124, 277, 332
HpyCH4III	ACNGT	2 cut(s)	145, 163
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	102, 168
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 86, 135, 356
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	3 cut(s)	17, 136, 213
Kzo9I	GATC	5 cut(s)	72, 184, 228, 288, 333
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	7 cut(s)	24, 43, 139, 184, 216, 336, 373
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	183
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	5 cut(s)	74, 186, 230, 290, 335
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	5 cut(s)	72, 184, 228, 288, 333
MboII	GAAGA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	8 cut(s)	34, 91, 131, 149, 161, 188, 256, 266
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	3 cut(s)	30, 171, 360
MvnI	CGCG	2 cut(s)	136, 332
MwoI	GCNNNNNNNGC	4 cut(s)	16, 86, 135, 356
NdeII	GATC	5 cut(s)	72, 184, 228, 288, 333
NmuCI	GTSAC	1 cut(s)	32
NruI	TCGCGA	1 cut(s)	332
NsbI	TGCGCA	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 72, 195, 336
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	217, 220, 238, 349
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	350
PsyI	GACNNNGTC	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	347
RruI	TCGCGA	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	4 cut(s)	216, 219, 237, 348
Sau3AI	GATC	5 cut(s)	72, 184, 228, 288, 333
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	299
SetI	ASST	7 cut(s)	111, 123, 153, 210, 267, 324, 349
SfaNI	GCATC	1 cut(s)	183
SsiI	CCGC	8 cut(s)	27, 60, 87, 127, 216, 219, 237, 253
TaaI	ACNGT	2 cut(s)	145, 163
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	6 cut(s)	66, 117, 147, 189, 227, 303
TauI	GCSGC	3 cut(s)	218, 221, 239
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	34
Tth111I	GACNNNGTC	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.