Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

11192148 .. 11194180

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032123

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACAAGTGTCATGAATCTGTGCATTATCACAACAACTTTAACAACTAATGAACAGACTGGACGTGTTGGTGGTGAAGGTGGGGAAGAGGGTATCGCCGTTCGTGGAAGGGGTGGAGAGAATTGCCACCGCCGCTATCAATCCGCCGACGGCCGCGACATCTCTGTCATCGCCAAGTCCGCCGTCGAAGAGATCGTCGCCTCCCCCGCCTCCGCCGTCTGCAAGAAGCTCGCCTTCGATCTCATCTGCTCCACGCGCCTCACCGCCGAGCTCTGGGACACCCGCCGCCGCGTCTCGATCCTCACCGCCATCCCCTCCTACCGCCTCCCCAAGCTCATCTCCGACACCAAGAAGGAGATCAACAACTGCTTCGACTCTCCATCTGATAACCTCCGATTAGCGATCACCGAGACGATGGGGTGCATTCTCGCACGTGACGACCTCGTGACTCTGTGTGAGAACAATGTCAATCTGCTGGATAAGGTCTTCGGCTGGTGGGGCCAGATTGGCCAGAACATGCTCGACGGCTCCGACGCCGTTTCGAAGGTCGGGTTCGAGTCGGTGGGGCGGTTGTTTCAGGAGTTCGATACCAAAAGGATGAGCAGACTCGCCGGAGATAAGTTGATAGATAGTGAGAATTCGTTTGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.79

Weight (kDa)

5.37

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccII	CGCG	3 cut(s)	156, 256, 291
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	151, 508
AcsI	RAATTY	1 cut(s)	637
AcvI	CACGTG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	65
AluBI	AGCT	3 cut(s)	229, 271, 334
AluI	AGCT	3 cut(s)	229, 271, 334
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	298, 404
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	3 cut(s)	151, 499, 508
ApoI	RAATTY	1 cut(s)	637
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	499
AsuHPI	GGTGA	4 cut(s)	86, 253, 295, 397
AsuII	TTCGAA	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	1 cut(s)	443
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	3 cut(s)	317, 388, 409
BceAI	ACGGC	6 cut(s)	83, 166, 167, 200, 521, 541
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BcoDI	GTCTC	2 cut(s)	298, 404
BglI	GCCNNNNNGGC	1 cut(s)	507
BisI	GCNGC	4 cut(s)	133, 154, 286, 289
BlsI	GCNGC	4 cut(s)	134, 155, 287, 290
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	2 cut(s)	500, 529
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	478
Bpu14I	TTCGAA	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	309, 603
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	64
BseX3I	CGGCCG	1 cut(s)	151
Bsh1236I	CGCG	3 cut(s)	156, 256, 291
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	3 cut(s)	153, 501, 510
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	298, 404
BsmBI	CGTCTC	2 cut(s)	298, 404
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	153, 501, 510
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	192, 238, 297, 357, 402
BspANI	GGCC	3 cut(s)	153, 501, 510
BspFNI	CGCG	3 cut(s)	156, 256, 291
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	500, 529
BspPI	GGATC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	5 cut(s)	192, 238, 297, 357, 402
BssNI	GRCGYC	1 cut(s)	534
BssSI	CACGAG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	443
Bst6I	CTCTTC	2 cut(s)	81, 183
BstACI	GRCGYC	1 cut(s)	534
BstBAI	YACGTR	1 cut(s)	434
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	309, 603
BstFNI	CGCG	3 cut(s)	156, 256, 291
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	5 cut(s)	195, 241, 300, 360, 405
BstMAI	GTCTC	2 cut(s)	298, 404
BstMBI	GATC	5 cut(s)	192, 238, 297, 357, 402
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 179, 206, 255, 498, 507
BstNSI	RCATGY	1 cut(s)	520
BstPAI	GACNNNNGTC	1 cut(s)	8
BstUI	CGCG	3 cut(s)	156, 256, 291
BstV2I	GAAGAC	1 cut(s)	478
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	153, 501, 510
BtgZI	GCGATG	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	309, 603
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	1 cut(s)	12
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	2 cut(s)	280, 542
CviAII	CATG	2 cut(s)	13, 517
CviJI	RGCY	8 cut(s)	153, 229, 271, 334, 492, 501, 510, 528
CviKI_1	RGCY	8 cut(s)	153, 229, 271, 334, 492, 501, 510, 528
DpnI	GATC	5 cut(s)	194, 240, 299, 359, 404
DpnII	GATC	5 cut(s)	192, 238, 297, 357, 402
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	2 cut(s)	151, 508
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	81, 183
EarI	CTCTTC	2 cut(s)	81, 183
EciI	GGCGGA	3 cut(s)	133, 169, 202
Ecl136II	GAGCTC	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	273
Eco52I	CGGCCG	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	271
Eco72I	CACGTG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	273
Esp3I	CGTCTC	2 cut(s)	298, 404
FaeI	CATG	2 cut(s)	16, 520
FaiI	YATR	2 cut(s)	14, 518
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	12, 516
FauI	CCCGC	2 cut(s)	214, 290
Fnu4HI	GCNGC	4 cut(s)	133, 154, 286, 289
FokI	GGATG	2 cut(s)	296, 610
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	4 cut(s)	133, 154, 286, 289
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	4 cut(s)	133, 154, 286, 289
HaeIII	GGCC	3 cut(s)	153, 501, 510
HapII	CCGG	1 cut(s)	612
HgaI	GACGC	2 cut(s)	280, 542
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	2 cut(s)	16, 520
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	5 cut(s)	16, 374, 448, 557, 606
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	4 cut(s)	86, 253, 295, 397
Hpy188I	TCNGA	4 cut(s)	343, 385, 395, 532
Hpy188III	TCNNGA	4 cut(s)	13, 295, 445, 578
Hpy99I	CGWCG	5 cut(s)	152, 188, 200, 527, 536
HpyAV	CCTTC	5 cut(s)	71, 102, 244, 346, 538
HpyCH4IV	ACGT	2 cut(s)	64, 433
HpyCH4V	TGCA	4 cut(s)	24, 222, 423, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 179, 206, 255, 498, 507
HpySE526I	ACGT	2 cut(s)	64, 433
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	2 cut(s)	16, 520
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	192, 238, 297, 357, 402
LmnI	GCTCC	2 cut(s)	254, 533
LpnPI	CCDG	8 cut(s)	45, 259, 461, 478, 515, 524, 563, 625
MaeII	ACGT	2 cut(s)	64, 433
MaeIII	GTNAC	2 cut(s)	434, 445
MalI	GATC	5 cut(s)	194, 240, 299, 359, 404
MboI	GATC	5 cut(s)	192, 238, 297, 357, 402
MboII	GAAGA	3 cut(s)	98, 200, 478
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	3 cut(s)	121, 637, 648
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	4 cut(s)	368, 442, 566, 600
MmeI	TCCRAC	2 cut(s)	366, 555
MnlI	CCTC	9 cut(s)	82, 211, 220, 269, 311, 325, 335, 401, 452
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	510
MspI	CCGG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	423
MvnI	CGCG	3 cut(s)	156, 256, 291
MwoI	GCNNNNNNNGC	6 cut(s)	132, 179, 206, 255, 498, 507
NdeII	GATC	5 cut(s)	192, 238, 297, 357, 402
NlaIII	CATG	2 cut(s)	16, 520
NlaIV	GGNNCC	2 cut(s)	500, 529
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	2 cut(s)	434, 445
NspI	RCATGY	1 cut(s)	520
NspV	TTCGAA	1 cut(s)	542
PagI	TCATGA	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 435, 528
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	4 cut(s)	134, 155, 287, 290
PleI	GAGTC	4 cut(s)	368, 442, 565, 600
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
PpsI	GAGTC	4 cut(s)	368, 442, 565, 600
Ppu21I	YACGTR	1 cut(s)	434
PshAI	GACNNNNGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	273
PspCI	CACGTG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	500, 529
PspPI	GGNCC	1 cut(s)	499
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	4 cut(s)	133, 154, 286, 289
Sau3AI	GATC	5 cut(s)	192, 238, 297, 357, 402
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	4 cut(s)	368, 442, 566, 600
SduI	GDGCHC	1 cut(s)	273
SfiI	GGCCNNNNNGGCC	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	542
Sse9I	AATT	3 cut(s)	121, 637, 648
SstI	GAGCTC	1 cut(s)	273
TaiI	ACGT	2 cut(s)	67, 436
TaqI	TCGA	8 cut(s)	186, 237, 296, 372, 522, 542, 555, 585
TasI	AATT	3 cut(s)	121, 637, 648
TauI	GCSGC	4 cut(s)	135, 156, 288, 291
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TseFI	GTSAC	2 cut(s)	434, 445
Tsp45I	GTSAC	2 cut(s)	434, 445
TspDTI	ATGAA	2 cut(s)	29, 66
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.