Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005106.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

4121 .. 6010

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005106.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgaaaagtctcatagttgatcaaattctgattttgaaccccaaggttggagttgccctaagggctaacggagggattatacagcaatccaccgccggccgcgacatctccgtcatcgccaagtcggccgtcgaagagatcgtcgcctcccccgcctccgccgtctgcaagaagctcgccttcgacctcatccgctccacgtgcctcatcgtcgacctttgggacaccgtctgcaccgacatcctcaccaatctcgacttccccgaccctgacgtcagcgccaccgccgtctcgatcctcgccgccatcccctcctaccgcctccccaagctcatcttcgacaccaagaaggagatcaacaactgcttcgactcgccgtctgataaccttcggttcgcgatcaccgagacgatggggtgcattctcgcatgtgacaatctcgtgactctgtgtgagaacaatgtcaatctgctggataaggtcttcggctggtggggccggataggccagaacatgctcgacggctccgacgccttttcgaaggtcgggttcgagtcggtggggcagttgtttcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.8

Weight (kDa)

4.61

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	110, 272
AatII	GACGTC	1 cut(s)	276
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	2 cut(s)	102, 398
AciI	CCGC	8 cut(s)	93, 100, 153, 159, 193, 285, 303, 319
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	2 cut(s)	97, 126
AcsI	RAATTY	1 cut(s)	24
AcvI	CACGTG	1 cut(s)	201
AcyI	GRCGYC	2 cut(s)	273, 531
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	37
AhdI	GACNNNNNGTC	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	4 cut(s)	242, 274, 320, 352
AluBI	AGCT	2 cut(s)	175, 331
AluI	AGCT	2 cut(s)	175, 331
Alw26I	GTCTC	3 cut(s)	14, 295, 401
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	4 cut(s)	97, 126, 496, 505
ApoI	RAATTY	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	238, 394
AsuII	TTCGAA	1 cut(s)	539
AxyI	CCTNAGG	1 cut(s)	59
BauI	CACGAG	1 cut(s)	440
BbrPI	CACGTG	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	475
BccI	CCATC	2 cut(s)	314, 406
BceAI	ACGGC	5 cut(s)	113, 146, 272, 361, 538
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	14, 295, 401
BfoI	RGCGCY	1 cut(s)	282
BglI	GCCNNNNNGGC	3 cut(s)	62, 125, 504
BisI	GCNGC	2 cut(s)	100, 303
BlsI	GCNGC	2 cut(s)	101, 304
BmeRI	GACNNNNNGTC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	2 cut(s)	497, 526
BpiI	GAAGAC	1 cut(s)	475
Bpu14I	TTCGAA	1 cut(s)	539
BsaAI	YACGTR	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	273, 531
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	95
Bse21I	CCTNAGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	189, 240, 306
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseX3I	CGGCCG	2 cut(s)	97, 126
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	102, 398
Bsh1285I	CGRYCG	2 cut(s)	100, 129
BshFI	GGCC	4 cut(s)	99, 128, 498, 507
BsiEI	CGRYCG	2 cut(s)	100, 129
BsiSI	CCGG	2 cut(s)	96, 499
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	3 cut(s)	14, 295, 401
BsmBI	CGTCTC	2 cut(s)	295, 401
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	4 cut(s)	99, 128, 498, 507
Bsp119I	TTCGAA	1 cut(s)	539
Bsp143I	GATC	5 cut(s)	19, 138, 294, 354, 399
Bsp68I	TCGCGA	1 cut(s)	398
BspACI	CCGC	8 cut(s)	93, 100, 153, 159, 193, 285, 303, 319
BspANI	GGCC	4 cut(s)	99, 128, 498, 507
BspFNI	CGCG	2 cut(s)	102, 398
BspLI	GGNNCC	2 cut(s)	497, 526
BspPI	GGATC	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	5 cut(s)	19, 138, 294, 354, 399
BssNI	GRCGYC	2 cut(s)	273, 531
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	2 cut(s)	273, 531
BstBAI	YACGTR	1 cut(s)	201
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	97, 177
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	189, 240, 306
BstFNI	CGCG	2 cut(s)	102, 398
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	5 cut(s)	22, 141, 297, 357, 402
BstMAI	GTCTC	3 cut(s)	14, 295, 401
BstMBI	GATC	5 cut(s)	19, 138, 294, 354, 399
BstMCI	CGRYCG	2 cut(s)	100, 129
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 125, 152, 201, 495, 504
BstNSI	RCATGY	2 cut(s)	432, 517
BstUI	CGCG	2 cut(s)	102, 398
BstV2I	GAAGAC	1 cut(s)	475
BstZI	CGGCCG	2 cut(s)	97, 126
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	99, 128, 498, 507
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	189, 240, 306
BtuMI	TCGCGA	1 cut(s)	398
Cac8I	GCNNGC	2 cut(s)	97, 177
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	496
CseI	GACGC	1 cut(s)	539
CviAII	CATG	2 cut(s)	429, 514
CviJI	RGCY	9 cut(s)	65, 99, 128, 175, 331, 489, 498, 507, 525
CviKI_1	RGCY	9 cut(s)	65, 99, 128, 175, 331, 489, 498, 507, 525
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	5 cut(s)	21, 140, 296, 356, 401
DpnII	GATC	5 cut(s)	19, 138, 294, 354, 399
DrdI	GACNNNNNNGTC	2 cut(s)	110, 272
DriI	GACNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	2 cut(s)	110, 272
EaeI	YGGCCR	2 cut(s)	97, 126
EagI	CGGCCG	2 cut(s)	97, 126
Eam1104I	CTCTTC	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	148
EclXI	CGGCCG	2 cut(s)	97, 126
Eco130I	CCWWGG	1 cut(s)	42
Eco52I	CGGCCG	2 cut(s)	97, 126
Eco72I	CACGTG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
Esp3I	CGTCTC	2 cut(s)	295, 401
FaeI	CATG	2 cut(s)	432, 517
FaiI	YATR	4 cut(s)	14, 80, 430, 515
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 320, 352
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	428, 513
FauI	CCCGC	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	100, 303
FokI	GGATG	3 cut(s)	176, 227, 293
Fsp4HI	GCNGC	2 cut(s)	100, 303
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	2 cut(s)	100, 303
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	4 cut(s)	99, 128, 498, 507
HapII	CCGG	2 cut(s)	96, 499
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	2 cut(s)	273, 531
Hin1II	CATG	2 cut(s)	432, 517
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	371, 445, 554
HpaII	CCGG	2 cut(s)	96, 499
HphI	GGTGA	2 cut(s)	238, 394
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	30, 382, 529
Hpy188III	TCNNGA	4 cut(s)	254, 292, 397, 442
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	5 cut(s)	134, 146, 215, 524, 533
HpyAV	CCTTC	4 cut(s)	190, 343, 398, 535
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	2 cut(s)	200, 273
HpyCH4V	TGCA	3 cut(s)	168, 234, 420
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 125, 152, 201, 495, 504
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	2 cut(s)	200, 273
Hsp92I	GRCGYC	2 cut(s)	273, 531
Hsp92II	CATG	2 cut(s)	432, 517
HspAI	GCGC	1 cut(s)	279
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	19, 138, 294, 354, 399
LmnI	GCTCC	2 cut(s)	200, 530
LpnPI	CCDG	6 cut(s)	109, 282, 458, 475, 512, 521
MaeII	ACGT	2 cut(s)	200, 273
MaeIII	GTNAC	2 cut(s)	431, 442
MalI	GATC	5 cut(s)	21, 140, 296, 356, 401
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	5 cut(s)	19, 138, 294, 354, 399
MboII	GAAGA	3 cut(s)	146, 328, 475
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	3 cut(s)	365, 439, 563
MmeI	TCCRAC	2 cut(s)	28, 552
MnlI	CCTC	9 cut(s)	65, 157, 166, 197, 215, 254, 308, 322, 332
MroNI	GCCGGC	1 cut(s)	95
MspI	CCGG	2 cut(s)	96, 499
Mva1269I	GAATGC	1 cut(s)	420
MvnI	CGCG	2 cut(s)	102, 398
MwoI	GCNNNNNNNGC	6 cut(s)	62, 125, 152, 201, 495, 504
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	5 cut(s)	19, 138, 294, 354, 399
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	432, 517
NlaIV	GGNNCC	2 cut(s)	497, 526
NmuCI	GTSAC	2 cut(s)	431, 442
NruI	TCGCGA	1 cut(s)	398
NspI	RCATGY	2 cut(s)	432, 517
NspV	TTCGAA	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 261, 402, 525
PctI	GAATGC	1 cut(s)	420
PdiI	GCCGGC	1 cut(s)	97
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	101, 304
PleI	GAGTC	3 cut(s)	365, 439, 562
PmaCI	CACGTG	1 cut(s)	201
PmlI	CACGTG	1 cut(s)	201
PpsI	GAGTC	3 cut(s)	365, 439, 562
Ppu21I	YACGTR	1 cut(s)	201
PspCI	CACGTG	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	497, 526
PspPI	GGNCC	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	227
RruI	TCGCGA	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	212
SatI	GCNGC	2 cut(s)	100, 303
Sau3AI	GATC	5 cut(s)	19, 138, 294, 354, 399
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	3 cut(s)	365, 439, 563
SfiI	GGCCNNNNNGGCC	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	539
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	8 cut(s)	93, 100, 153, 159, 193, 285, 303, 319
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	2 cut(s)	203, 276
TasI	AATT	1 cut(s)	24
TauI	GCSGC	2 cut(s)	102, 305
TseFI	GTSAC	2 cut(s)	431, 442
Tsp45I	GTSAC	2 cut(s)	431, 442
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	84, 100
Tth111I	GACNNNGTC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	2 cut(s)	432, 517
XmiI	GTMKAC	1 cut(s)	213
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.