Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

4479716 .. 4480194

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCGGAGGCTGCAAAGTCTCCGATTCTGATCCGATCCACGTCCCTCACCGCCGACCTATTGGACACCGTCTACACCGAAGCTCTCACCTATCCGACCCGCGTTGGACATCATTACCAACTTCCTGAGCCGGGTCAAGGCATCGGAGACCTGGGCCACCAGGGCCCGCTTCTTCTTCTTCGGCTCCCTCTCTCTCTATTCGTCTTCTCTCTCTTCCATCCTCTCCCTCTCTGCTCATGGCCATCAAATGTTCGGAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAAGGGAATTGGTTGGAGCAGAAGAAGAAGAAGAAGGAAATGGAATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.54

Weight (kDa)

9.07

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	102
AciI	CCGC	4 cut(s)	5, 51, 100, 167
AclWI	GGATC	2 cut(s)	25, 30
AcoI	YGGCCR	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	131, 137
AjiI	CACGTC	1 cut(s)	42
AjnI	CCWGG	2 cut(s)	150, 159
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	24, 141
AlwI	GGATC	2 cut(s)	25, 30
AoxI	GGCC	3 cut(s)	154, 163, 239
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	154, 163, 164
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	40, 79
BaeGI	GKGCMC	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	196
BccI	CCATC	2 cut(s)	225, 250
BciT130I	CCWGG	2 cut(s)	152, 161
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	24, 141
BglI	GCCNNNNNGGC	1 cut(s)	162
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	132, 152, 161
BmgBI	CACGTC	1 cut(s)	42
BmgT120I	GGNCC	3 cut(s)	154, 163, 164
BmiI	GGNNCC	2 cut(s)	165, 185
BmrFI	CCNGG	3 cut(s)	132, 152, 161
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	151, 160
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 137
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	152, 161
BseDI	CCNNGG	2 cut(s)	151, 160
BseGI	GGATG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	131, 137
BseMII	CTCAG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	156, 165, 241
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	131, 137
BsmAI	GTCTC	2 cut(s)	24, 141
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	156, 165, 241
Bso31I	GGTCTC	1 cut(s)	141
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	30, 35
BspACI	CCGC	4 cut(s)	5, 51, 100, 167
BspANI	GGCC	3 cut(s)	156, 165, 241
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	165, 185
BspPI	GGATC	2 cut(s)	25, 30
BspTNI	GGTCTC	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	151, 160
BssMI	GATC	2 cut(s)	30, 35
Bst2UI	CCWGG	2 cut(s)	152, 161
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	33, 38
BstMAI	GTCTC	2 cut(s)	24, 141
BstMBI	GATC	2 cut(s)	30, 35
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 162
BstNI	CCWGG	2 cut(s)	152, 161
BstSCI	CCNGG	3 cut(s)	130, 150, 159
BstSLI	GKGCMC	1 cut(s)	167
BstUI	CGCG	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	156, 165, 241
BtrI	CACGTC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	154, 163, 164
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	7 cut(s)	11, 83, 130, 156, 165, 184, 241
CviKI_1	RGCY	7 cut(s)	11, 83, 130, 156, 165, 184, 241
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	32, 37
DpnII	GATC	2 cut(s)	30, 35
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	150, 159
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	1 cut(s)	240
FaiI	YATR	1 cut(s)	238
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	236
FauI	CCCGC	2 cut(s)	107, 174
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	204
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	156, 165, 241
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	2 cut(s)	40, 79
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	6 cut(s)	24, 30, 35, 96, 146, 255
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	280, 317
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 162
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	30, 35
LmnI	GCTCC	2 cut(s)	189, 305
LpnPI	CCDG	6 cut(s)	137, 138, 144, 146, 164, 173
LweI	GCATC	1 cut(s)	150
MaeII	ACGT	1 cut(s)	41
MalI	GATC	2 cut(s)	32, 37
MboI	GATC	2 cut(s)	30, 35
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	2 cut(s)	296, 333
MluNI	TGGCCA	1 cut(s)	241
MmeI	TCCRAC	3 cut(s)	85, 119, 283
MnlI	CCTC	4 cut(s)	56, 198, 231, 237
Mox20I	TGGCCA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	241
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	3 cut(s)	132, 152, 161
MvaI	CCWGG	2 cut(s)	152, 161
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	11, 162
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	30, 35
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	2 cut(s)	165, 185
PfeI	GAWTC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	150, 159
PspGI	CCWGG	2 cut(s)	150, 159
PspN4I	GGNNCC	2 cut(s)	165, 185
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	154, 163, 164
PsyI	GACNNNGTC	1 cut(s)	68
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	30, 35
Sau96I	GGNCC	3 cut(s)	154, 163, 164
ScrFI	CCNGG	3 cut(s)	132, 152, 161
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	5 cut(s)	44, 60, 85, 92, 153
SfaNI	GCATC	1 cut(s)	150
SfiI	GGCCNNNNNGGCC	1 cut(s)	162
Sse9I	AATT	2 cut(s)	296, 333
SsiI	CCGC	4 cut(s)	5, 51, 100, 167
StyD4I	CCNGG	3 cut(s)	130, 150, 159
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	44
TasI	AATT	2 cut(s)	296, 333
TfiI	GAWTC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	11
Tth111I	GACNNNGTC	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.