Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8356175.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

58 .. 1061

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8356175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1004 bp

atggacatactcttcgctcagatccaagccgacctccgctccagcgacgccctccgccagtccggcgccctcctccaagccctccagcagtccgccgccggccgcgacatctccgtcatcgccaagtccgccgtcgaagagatcgtcgcctcccccgcctccgccgtctgcaagaagctcgccttcgacctcatccgctccacccgcctcaccgccgacctctgggacaccgtctgcaccggcgtcctcaccgatctcgacttccccgaccctgacgtcagcgccgccgccgtctcgatcctcgccgccatcccctcctaccgcctccccaagctcatcgccgacaccaagaaggagatcaacaactgcttcgactcgccgtccgataacctccggttcgcgatcaccgagacgatggggtgcattctcgcacgtgacgatctcgtgactctgtgcgagaacaatgtcaatcttctcgataaggtctccggctggtggggccggatcggccagaacatgctcgacggctccgacgccgtttcgaaggtcgcgttcgagtctgtggggcggttgtttcaggagttcgataccaaaaggatgagcagactcgccggagataagttgatagacagtgagaattcgcttgcgattcgatccaattgggtttcttcaatggtggacttcgtctggaagaagcggagtgctttaatggcgaggtcgttggttttgccggtggagagtttcagggccacggtgtttccgattgtgtatgccgttaaggctgtggcctccggctccgtcgaggtcataaggaagctatccaagtcttctggtagttctaatgcgactattgtggatagtaatgccgagaggttcgtcggagtttcggatgtggtgacgcatttggtgccctttttggcctcgtctttggatccagctttgatttttgaggtggggattgacatgttgtacttggctgatgttcctggtgggaagcctgagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

36.05

Weight (kDa)

4.99

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	113, 275
AatII	GACGTC	1 cut(s)	279
AccB1I	GGYRCC	2 cut(s)	65, 907
AccBSI	CCGCTC	2 cut(s)	39, 198
AccII	CGCG	3 cut(s)	105, 401, 551
AclWI	GGATC	6 cut(s)	16, 292, 512, 648, 926, 939
AcoI	YGGCCR	2 cut(s)	100, 508
AcsI	RAATTY	1 cut(s)	637
AcvI	CACGTG	1 cut(s)	434
AcyI	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	2 cut(s)	222, 495
AflIII	ACRYGT	1 cut(s)	963
AgsI	TTSAA	1 cut(s)	672
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	985
AluBI	AGCT	4 cut(s)	178, 334, 817, 938
AluI	AGCT	4 cut(s)	178, 334, 817, 938
Alw26I	GTCTC	3 cut(s)	298, 404, 490
AlwI	GGATC	6 cut(s)	16, 292, 512, 648, 926, 939
AoxI	GGCC	6 cut(s)	100, 499, 508, 747, 786, 918
ApoI	RAATTY	1 cut(s)	637
ArsI	GACNNNNNNTTYG	3 cut(s)	28, 129, 161
AspLEI	GCGC	2 cut(s)	68, 284
AspS9I	GGNCC	2 cut(s)	499, 747
AsuHPI	GGTGA	4 cut(s)	202, 241, 397, 907
AsuII	TTCGAA	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	912
BamHI	GGATCC	1 cut(s)	931
BanI	GGYRCC	2 cut(s)	65, 907
BauI	CACGAG	1 cut(s)	443
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	819
BccI	CCATC	2 cut(s)	317, 409
BceAI	ACGGC	7 cut(s)	116, 149, 275, 364, 521, 541, 758
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	987
BcoDI	GTCTC	3 cut(s)	298, 404, 490
BfoI	RGCGCY	2 cut(s)	69, 285
BglI	GCCNNNNNGGC	3 cut(s)	63, 507, 779
BisI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
BlsI	GCNGC	5 cut(s)	97, 104, 286, 289, 307
Bme1390I	CCNGG	1 cut(s)	987
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	499, 747
BmiI	GGNNCC	6 cut(s)	67, 500, 529, 796, 909, 933
BmrFI	CCNGG	1 cut(s)	987
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	2 cut(s)	25, 68
Bpu14I	TTCGAA	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	434
BsaHI	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	1 cut(s)	750
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 495
Bse118I	RCCGGY	3 cut(s)	98, 239, 730
Bse1I	ACTGG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	4 cut(s)	192, 309, 603, 895
BseLI	CCNNNNNNNGG	2 cut(s)	222, 495
BseMII	CTCAG	2 cut(s)	32, 990
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	912
BseX3I	CGGCCG	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	3 cut(s)	105, 401, 551
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	6 cut(s)	102, 501, 510, 749, 788, 920
BshNI	GGYRCC	2 cut(s)	65, 907
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	9 cut(s)	63, 99, 240, 394, 489, 502, 612, 731, 792
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	222, 495
BsmAI	GTCTC	3 cut(s)	298, 404, 490
BsmBI	CGTCTC	2 cut(s)	298, 404
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	6 cut(s)	102, 501, 510, 749, 788, 920
Bso31I	GGTCTC	1 cut(s)	490
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	912
Bsp68I	TCGCGA	1 cut(s)	401
BspANI	GGCC	6 cut(s)	102, 501, 510, 749, 788, 920
BspCNI	CTCAG	2 cut(s)	31, 991
BspFNI	CGCG	3 cut(s)	105, 401, 551
BspLI	GGNNCC	6 cut(s)	67, 500, 529, 796, 909, 933
BspPI	GGATC	6 cut(s)	16, 292, 512, 648, 926, 939
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	2 cut(s)	65, 907
BspTNI	GGTCTC	1 cut(s)	490
BsrBI	CCGCTC	2 cut(s)	39, 198
BsrFI	RCCGGY	3 cut(s)	98, 239, 730
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	3 cut(s)	98, 239, 730
BssECI	CCNNGG	1 cut(s)	750
BssNI	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
BssSI	CACGAG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	3 cut(s)	232, 632, 754
Bst6I	CTCTTC	2 cut(s)	17, 132
BstACI	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
BstAPI	GCANNNNNTGC	1 cut(s)	907
BstBAI	YACGTR	1 cut(s)	434
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	100, 180, 645
BstDEI	CTNAG	2 cut(s)	18, 999
BstDSI	CCRYGG	1 cut(s)	750
BstF5I	GGATG	4 cut(s)	192, 309, 603, 895
BstFNI	CGCG	3 cut(s)	105, 401, 551
BstH2I	RGCGCY	2 cut(s)	69, 285
BstHHI	GCGC	2 cut(s)	68, 284
BstMAI	GTCTC	3 cut(s)	298, 404, 490
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	9 cut(s)	63, 128, 155, 204, 498, 507, 710, 779, 907
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	2 cut(s)	520, 967
BstSCI	CCNGG	1 cut(s)	985
BstSLI	GKGCMC	1 cut(s)	912
BstUI	CGCG	3 cut(s)	105, 401, 551
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	2 cut(s)	21, 931
BstYI	RGATCY	2 cut(s)	21, 931
BstZI	CGGCCG	1 cut(s)	100
BsuRI	GGCC	6 cut(s)	102, 501, 510, 749, 788, 920
BtgI	CCRYGG	1 cut(s)	750
BtgZI	GCGATG	2 cut(s)	103, 322
BtsCI	GGATG	4 cut(s)	192, 309, 603, 895
BtsIMutI	CAGTG	1 cut(s)	637
BtuMI	TCGCGA	1 cut(s)	401
Cac8I	GCNNGC	3 cut(s)	100, 180, 645
CfoI	GCGC	2 cut(s)	68, 284
Cfr10I	RCCGGY	3 cut(s)	98, 239, 730
Cfr13I	GGNCC	2 cut(s)	499, 747
CseI	GACGC	4 cut(s)	56, 232, 542, 907
Csp6I	GTAC	1 cut(s)	970
CviAII	CATG	2 cut(s)	517, 964
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	2 cut(s)	18, 999
DinI	GGCGCC	1 cut(s)	67
DrdI	GACNNNNNNGTC	2 cut(s)	113, 275
DriI	GACNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	2 cut(s)	113, 275
EaeI	YGGCCR	2 cut(s)	100, 508
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	17, 132
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	2 cut(s)	17, 132
EciI	GGCGGA	4 cut(s)	44, 82, 118, 151
EclXI	CGGCCG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	490
Eco52I	CGGCCG	1 cut(s)	100
Eco72I	CACGTG	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	985
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
Esp3I	CGTCTC	2 cut(s)	298, 404
FaeI	CATG	2 cut(s)	520, 967
FaiI	YATR	5 cut(s)	8, 518, 771, 809, 965
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	516, 963
FauI	CCCGC	2 cut(s)	163, 212
Fnu4HI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
FokI	GGATG	4 cut(s)	179, 296, 610, 902
Fsp4HI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
GlaI	GCGC	2 cut(s)	67, 283
GluI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
GsuI	CTGGAG	2 cut(s)	25, 68
HaeII	RGCGCY	2 cut(s)	69, 285
HaeIII	GGCC	6 cut(s)	102, 501, 510, 749, 788, 920
HapII	CCGG	9 cut(s)	63, 99, 240, 394, 489, 502, 612, 731, 792
HgaI	GACGC	4 cut(s)	56, 232, 542, 907
HhaI	GCGC	2 cut(s)	68, 284
Hin1I	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
Hin1II	CATG	2 cut(s)	520, 967
Hin6I	GCGC	2 cut(s)	66, 282
HinP1I	GCGC	2 cut(s)	66, 282
HinfI	GANTC	5 cut(s)	374, 448, 557, 606, 649
HpaII	CCGG	9 cut(s)	63, 99, 240, 394, 489, 502, 612, 731, 792
HphI	GGTGA	4 cut(s)	202, 241, 397, 907
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	6 cut(s)	21, 385, 532, 762, 881, 889
Hpy188III	TCNNGA	7 cut(s)	257, 295, 400, 445, 476, 578, 688
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	7 cut(s)	50, 137, 149, 527, 536, 803, 881
HpyAV	CCTTC	3 cut(s)	193, 346, 538
HpyCH4III	ACNGT	3 cut(s)	232, 632, 754
HpyCH4IV	ACGT	2 cut(s)	276, 433
HpyCH4V	TGCA	3 cut(s)	171, 237, 423
HpyF10VI	GCNNNNNNNGC	9 cut(s)	63, 128, 155, 204, 498, 507, 710, 779, 907
HpyF3I	CTNAG	2 cut(s)	18, 999
HpySE526I	ACGT	2 cut(s)	276, 433
Hsp92I	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
Hsp92II	CATG	2 cut(s)	520, 967
HspAI	GCGC	2 cut(s)	66, 282
KasI	GGCGCC	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
LmnI	GCTCC	4 cut(s)	44, 203, 533, 800
MaeII	ACGT	2 cut(s)	276, 433
MaeIII	GTNAC	3 cut(s)	434, 445, 895
MbiI	CCGCTC	2 cut(s)	39, 198
MboII	GAAGA	6 cut(s)	4, 149, 464, 660, 703, 819
MfeI	CAATTG	1 cut(s)	658
MflI	RGATCY	2 cut(s)	21, 931
MhlI	GDGCHC	1 cut(s)	912
MluCI	AATT	2 cut(s)	637, 658
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	4 cut(s)	368, 442, 566, 600
MmeI	TCCRAC	2 cut(s)	555, 859
MroNI	GCCGGC	1 cut(s)	98
MseI	TTAA	2 cut(s)	707, 777
MspI	CCGG	9 cut(s)	63, 99, 240, 394, 489, 502, 612, 731, 792
MspR9I	CCNGG	1 cut(s)	987
MunI	CAATTG	1 cut(s)	658
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	987
MvnI	CGCG	3 cut(s)	105, 401, 551
MwoI	GCNNNNNNNGC	9 cut(s)	63, 128, 155, 204, 498, 507, 710, 779, 907
NaeI	GCCGGC	1 cut(s)	100
NarI	GGCGCC	1 cut(s)	66
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	520, 967
NlaIV	GGNNCC	6 cut(s)	67, 500, 529, 796, 909, 933
NmeAIII	GCCGAG	1 cut(s)	892
NmuCI	GTSAC	3 cut(s)	434, 445, 895
NruI	TCGCGA	1 cut(s)	401
NspI	RCATGY	2 cut(s)	520, 967
NspV	TTCGAA	1 cut(s)	542
PciI	ACATGT	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	7 cut(s)	141, 264, 405, 435, 528, 548, 758
PctI	GAATGC	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	649
PflFI	GACNNNGTC	2 cut(s)	230, 683
PkrI	GCNGC	5 cut(s)	97, 104, 286, 289, 307
PleI	GAGTC	4 cut(s)	368, 442, 565, 600
PluTI	GGCGCC	1 cut(s)	69
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
PpsI	GAGTC	4 cut(s)	368, 442, 565, 600
Ppu21I	YACGTR	1 cut(s)	434
PscI	ACATGT	1 cut(s)	963
Psp6I	CCWGG	1 cut(s)	985
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	6 cut(s)	67, 500, 529, 796, 909, 933
PspPI	GGNCC	2 cut(s)	499, 747
PsuI	RGATCY	2 cut(s)	21, 931
PsyI	GACNNNGTC	2 cut(s)	230, 683
RruI	TCGCGA	1 cut(s)	401
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
SaqAI	TTAA	2 cut(s)	707, 777
SatI	GCNGC	5 cut(s)	96, 103, 285, 288, 306
Sau96I	GGNCC	2 cut(s)	499, 747
SchI	GAGTC	4 cut(s)	368, 442, 566, 600
ScrFI	CCNGG	1 cut(s)	987
SduI	GDGCHC	1 cut(s)	912
SfiI	GGCCNNNNNGGCC	1 cut(s)	507
SfoI	GGCGCC	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	542
SgrAI	CRCCGGYG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	637, 658
SspDI	GGCGCC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	985
TaaI	ACNGT	3 cut(s)	232, 632, 754
TaiI	ACGT	2 cut(s)	279, 436
TasI	AATT	2 cut(s)	637, 658
TatI	WGTACW	1 cut(s)	969
TauI	GCSGC	5 cut(s)	98, 105, 287, 290, 308
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	2 cut(s)	707, 777
Tru9I	TTAA	2 cut(s)	707, 777
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	3 cut(s)	434, 445, 895
Tsp45I	GTSAC	3 cut(s)	434, 445, 895
TspGWI	ACGGA	2 cut(s)	103, 787
TspRI	CASTG	1 cut(s)	637
Tth111I	GACNNNGTC	2 cut(s)	230, 683
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	2 cut(s)	520, 967
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.