Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

5734068 .. 5737141

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAGTCATCTAAATGCAGTGGAGAATGCAGTCACCGTTTGGTGGGTTTGGTGGCTTTCTTAGCAATCCGCCGCGGCCGCGACATCTCCGTCATCGCCAAGTCCGCCGTCGAAGAGATCGTCGCCTCCCCCGCCTCCGCCGTCTGCAAGAAGCTCGCCTTCGACCTCATCCTCTCCACACGCCTCACCGCCAACCTCTGGGACACCGTCTGCATCGGCATCCTCACCGATCTCGACTTCCCCGACCCTGACATCAGCGCCGCCGCCGTCTCGATCCTCGCCGCCATCCCCTCCTACCGCCTCCCCAAGCTTATCTCCGACACTAAGAAGGAGATCAACAACTGCTTCGACTCGCCGTCTGATAACCGGTTCGCGATCACCGAGACGATGGGGTGCATTCTTGCACGTGACGATCTCGTGACTCTGTGTGAGAACAATGTCAATCTGCTGGATAAGGAATTCGATACCAAAAGGATGAGCAGATTCGCCAGAGATAAGTTGATAGATAGTGAGAATTCGCTTGTGATTCGATCCAATTGGGTCTCTTCAATGGTGGACTTCGTCTGGAAGAAGCGGAGTGCTCTAATGGCGAGGTCGTTGGTTTTGGCGGTGGAGAGTTTCAGGGCCACTGTGTTTCCGATTGTGTATGCCGTTAAGGCTGTGGCCTCCGGCTCCGTCGAGGTCATAAGGAAGCTATCCAAGTCTTCTGGTGGTTCTAATGCGACTATTGTGGATAGTAATGCTGAGAGGTTCGTCGGAGTTTCGAATGTGGTGACGCATTTGGTGCTCTTTTTGGCCTCGTCTTTGGATCCAGCTTTGATTTTTGAGGTGGGGATTGACATGTTGTACTTGGCTGATGTTCCTGGTGGGAAGCCTGAGTGGGCTTCGCAATCCATTATTGCAATTCTCACACTTTGGGATAGGCAAGAGTTTGCTTCAGCTAGGGAAAGTGTTGTTAGAGCTGTTGTTACAAATCTTCATCTTCTCGATCTTCATATGCAGGTATGCTTACTTGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

37.18

Weight (kDa)

6.14

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	991
AccB7I	CCANNNNNTGG	1 cut(s)	198
AccII	CGCG	3 cut(s)	75, 81, 374
AclWI	GGATC	4 cut(s)	268, 525, 803, 816
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	458, 514
AcuI	CTGAAG	1 cut(s)	921
AcvI	CACGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	2 cut(s)	43, 198
AflIII	ACRYGT	1 cut(s)	840
AgeI	ACCGGT	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	549
AhdI	GACNNNNNGTC	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	862
AluBI	AGCT	6 cut(s)	154, 310, 694, 815, 941, 962
AluI	AGCT	6 cut(s)	154, 310, 694, 815, 941, 962
Alw21I	GWGCWC	2 cut(s)	583, 789
Alw26I	GTCTC	3 cut(s)	274, 377, 547
AlwI	GGATC	4 cut(s)	268, 525, 803, 816
AoxI	GGCC	4 cut(s)	76, 624, 663, 795
ApoI	RAATTY	2 cut(s)	458, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	624
AsuHPI	GGTGA	5 cut(s)	26, 178, 217, 370, 784
AsuII	TTCGAA	1 cut(s)	764
BamHI	GGATCC	1 cut(s)	808
BauI	CACGAG	1 cut(s)	416
BbrPI	CACGTG	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	2 cut(s)	583, 789
BccI	CCATC	2 cut(s)	293, 382
BceAI	ACGGC	5 cut(s)	92, 125, 251, 340, 635
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	864
BcoDI	GTCTC	3 cut(s)	274, 377, 547
BfaI	CTAG	1 cut(s)	942
BfoI	RGCGCY	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	991
BglI	GCCNNNNNGGC	1 cut(s)	656
BisI	GCNGC	6 cut(s)	73, 76, 79, 261, 264, 282
BlsI	GCNGC	6 cut(s)	74, 77, 80, 262, 265, 283
Bme1390I	CCNGG	1 cut(s)	864
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	624
BmiI	GGNNCC	2 cut(s)	673, 810
BmrFI	CCNGG	1 cut(s)	864
BmsI	GCATC	2 cut(s)	222, 228
BpiI	GAAGAC	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	764
BsaAI	YACGTR	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 198
Bse118I	RCCGGY	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	864
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	4 cut(s)	168, 219, 285, 480
BseLI	CCNNNNNNNGG	2 cut(s)	43, 198
BseMII	CTCAG	2 cut(s)	735, 867
BseX3I	CGGCCG	1 cut(s)	76
Bsh1236I	CGCG	3 cut(s)	75, 81, 374
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	78, 626, 665, 797
BshTI	ACCGGT	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	583, 789
BsiSI	CCGG	2 cut(s)	367, 669
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	43, 198
BsmAI	GTCTC	3 cut(s)	274, 377, 547
BsmBI	CGTCTC	2 cut(s)	274, 377
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	2 cut(s)	32, 396
BsnI	GGCC	4 cut(s)	78, 626, 665, 797
Bso31I	GGTCTC	1 cut(s)	547
Bsp119I	TTCGAA	1 cut(s)	764
Bsp1286I	GDGCHC	2 cut(s)	583, 789
Bsp143I	GATC	9 cut(s)	117, 229, 273, 333, 375, 412, 530, 808, 988
Bsp68I	TCGCGA	1 cut(s)	374
BspANI	GGCC	4 cut(s)	78, 626, 665, 797
BspCNI	CTCAG	2 cut(s)	736, 868
BspFNI	CGCG	3 cut(s)	75, 81, 374
BspLI	GGNNCC	2 cut(s)	673, 810
BspMI	ACCTGC	1 cut(s)	991
BspPI	GGATC	4 cut(s)	268, 525, 803, 816
BspT104I	TTCGAA	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	9 cut(s)	117, 229, 273, 333, 375, 412, 530, 808, 988
BssSI	CACGAG	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	3 cut(s)	38, 208, 631
Bst6I	CTCTTC	2 cut(s)	108, 550
BstAPI	GCANNNNNTGC	1 cut(s)	784
BstBAI	YACGTR	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	764
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	4 cut(s)	61, 324, 744, 876
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	4 cut(s)	168, 219, 285, 480
BstFNI	CGCG	3 cut(s)	75, 81, 374
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	9 cut(s)	120, 232, 276, 336, 378, 415, 533, 811, 991
BstMAI	GTCTC	3 cut(s)	274, 377, 547
BstMBI	GATC	9 cut(s)	117, 229, 273, 333, 375, 412, 530, 808, 988
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 78, 104, 131, 587, 656, 784
BstNI	CCWGG	1 cut(s)	864
BstNSI	RCATGY	1 cut(s)	844
BstSCI	CCNGG	1 cut(s)	862
BstUI	CGCG	3 cut(s)	75, 81, 374
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
BstZI	CGGCCG	1 cut(s)	76
BsuRI	GGCC	4 cut(s)	78, 626, 665, 797
BtgI	CCRYGG	1 cut(s)	73
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	168, 219, 285, 480
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 627
BtuMI	TCGCGA	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	991
Cac8I	GCNNGC	1 cut(s)	156
CciNI	GCGGCCGC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	624
Cfr42I	CCGCGG	1 cut(s)	76
CseI	GACGC	1 cut(s)	784
Csp6I	GTAC	1 cut(s)	847
CspAI	ACCGGT	1 cut(s)	366
CviAII	CATG	1 cut(s)	841
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	4 cut(s)	61, 324, 744, 876
DpnI	GATC	9 cut(s)	119, 231, 275, 335, 377, 414, 532, 810, 990
DpnII	GATC	9 cut(s)	117, 229, 273, 333, 375, 412, 530, 808, 988
DrdI	GACNNNNNNGTC	1 cut(s)	89
DriI	GACNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	76
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	108, 550
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	2 cut(s)	108, 550
EciI	GGCGGA	3 cut(s)	59, 94, 127
EclXI	CGGCCG	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	547
Eco52I	CGGCCG	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	921
Eco72I	CACGTG	1 cut(s)	407
EcoRI	GAATTC	2 cut(s)	458, 514
EcoRII	CCWGG	1 cut(s)	862
Esp3I	CGTCTC	2 cut(s)	274, 377
FaeI	CATG	1 cut(s)	844
FaiI	YATR	7 cut(s)	648, 686, 842, 996, 998, 1006, 1021
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	840
FauI	CCCGC	1 cut(s)	139
FauNDI	CATATG	1 cut(s)	996
Fnu4HI	GCNGC	6 cut(s)	73, 76, 79, 261, 264, 282
FokI	GGATG	4 cut(s)	155, 206, 272, 487
Fsp4HI	GCNGC	6 cut(s)	73, 76, 79, 261, 264, 282
FspBI	CTAG	1 cut(s)	942
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	6 cut(s)	73, 76, 79, 261, 264, 282
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	4 cut(s)	78, 626, 665, 797
HapII	CCGG	2 cut(s)	367, 669
HgaI	GACGC	1 cut(s)	784
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	844
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	4 cut(s)	350, 421, 483, 526
HpaII	CCGG	2 cut(s)	367, 669
HphI	GGTGA	5 cut(s)	26, 178, 217, 370, 784
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	4 cut(s)	319, 361, 639, 758
Hpy188III	TCNNGA	6 cut(s)	233, 271, 373, 418, 565, 986
Hpy8I	GTNNAC	1 cut(s)	556
Hpy99I	CGWCG	4 cut(s)	113, 125, 680, 758
HpyAV	CCTTC	2 cut(s)	169, 322
HpyCH4III	ACNGT	3 cut(s)	38, 208, 631
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	8 cut(s)	18, 30, 147, 213, 396, 404, 902, 1000
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 78, 104, 131, 587, 656, 784
HpyF3I	CTNAG	4 cut(s)	61, 324, 744, 876
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	1 cut(s)	844
HspAI	GCGC	1 cut(s)	258
KspI	CCGCGG	1 cut(s)	76
Kzo9I	GATC	9 cut(s)	117, 229, 273, 333, 375, 412, 530, 808, 988
LmnI	GCTCC	1 cut(s)	677
LweI	GCATC	2 cut(s)	222, 228
MaeI	CTAG	1 cut(s)	942
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	5 cut(s)	32, 407, 418, 772, 967
MalI	GATC	9 cut(s)	119, 231, 275, 335, 377, 414, 532, 810, 990
MboI	GATC	9 cut(s)	117, 229, 273, 333, 375, 412, 530, 808, 988
MboII	GAAGA	7 cut(s)	125, 537, 580, 696, 968, 974, 983
MfeI	CAATTG	1 cut(s)	535
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	2 cut(s)	583, 789
MluCI	AATT	4 cut(s)	458, 514, 535, 903
MlyI	GAGTC	2 cut(s)	344, 415
MmeI	TCCRAC	2 cut(s)	342, 736
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	13
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	2 cut(s)	367, 669
MspR9I	CCNGG	1 cut(s)	864
MunI	CAATTG	1 cut(s)	535
Mva1269I	GAATGC	2 cut(s)	32, 396
MvaI	CCWGG	1 cut(s)	864
MvnI	CGCG	3 cut(s)	75, 81, 374
MwoI	GCNNNNNNNGC	7 cut(s)	62, 78, 104, 131, 587, 656, 784
NdeI	CATATG	1 cut(s)	996
NdeII	GATC	9 cut(s)	117, 229, 273, 333, 375, 412, 530, 808, 988
NlaIII	CATG	1 cut(s)	844
NlaIV	GGNNCC	2 cut(s)	673, 810
NmuCI	GTSAC	4 cut(s)	32, 407, 418, 772
NotI	GCGGCCGC	1 cut(s)	76
NruI	TCGCGA	1 cut(s)	374
NspI	RCATGY	1 cut(s)	844
NspV	TTCGAA	1 cut(s)	764
PciI	ACATGT	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 240, 378
PctI	GAATGC	2 cut(s)	32, 396
PfeI	GAWTC	2 cut(s)	483, 526
PflFI	GACNNNGTC	2 cut(s)	206, 560
PflMI	CCANNNNNTGG	1 cut(s)	198
PinAI	ACCGGT	1 cut(s)	366
PkrI	GCNGC	6 cut(s)	74, 77, 80, 262, 265, 283
PleI	GAGTC	2 cut(s)	344, 415
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
PpsI	GAGTC	2 cut(s)	344, 415
Ppu21I	YACGTR	1 cut(s)	407
PscI	ACATGT	1 cut(s)	840
Psp6I	CCWGG	1 cut(s)	862
PspCI	CACGTG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	862
PspN4I	GGNNCC	2 cut(s)	673, 810
PspPI	GGNCC	1 cut(s)	624
PsuI	RGATCY	1 cut(s)	808
PsyI	GACNNNGTC	2 cut(s)	206, 560
RruI	TCGCGA	1 cut(s)	374
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	6 cut(s)	73, 76, 79, 261, 264, 282
Sau3AI	GATC	9 cut(s)	117, 229, 273, 333, 375, 412, 530, 808, 988
Sau96I	GGNCC	1 cut(s)	624
SchI	GAGTC	2 cut(s)	344, 415
ScrFI	CCNGG	1 cut(s)	864
SduI	GDGCHC	2 cut(s)	583, 789
SfaNI	GCATC	2 cut(s)	222, 228
Sfr303I	CCGCGG	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	764
SgrBI	CCGCGG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	4 cut(s)	458, 514, 535, 903
SspMI	CTAG	1 cut(s)	942
StyD4I	CCNGG	1 cut(s)	862
TaaI	ACNGT	3 cut(s)	38, 208, 631
TaiI	ACGT	1 cut(s)	409
TasI	AATT	4 cut(s)	458, 514, 535, 903
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	6 cut(s)	75, 78, 81, 263, 266, 284
TfiI	GAWTC	2 cut(s)	483, 526
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	2 cut(s)	25, 634
TseFI	GTSAC	4 cut(s)	32, 407, 418, 772
Tsp45I	GTSAC	4 cut(s)	32, 407, 418, 772
TspDTI	ATGAA	3 cut(s)	17, 968, 983
TspGWI	ACGGA	2 cut(s)	79, 664
TspRI	CASTG	2 cut(s)	25, 634
Tth111I	GACNNNGTC	2 cut(s)	206, 560
Van91I	CCANNNNNTGG	1 cut(s)	198
XapI	RAATTY	2 cut(s)	458, 514
XceI	RCATGY	1 cut(s)	844
XspI	CTAG	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.