Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

13621167 .. 13623405

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAGGTTTGGGAGATTTGCAACTTGTACTCCTCGACAAGTTATCAACACATTACCTCTTCTTAGTCTTCTATCGAACATCATTTTGGTGTGGCAAGGTCAGCAATCCGCTGCCGACAGCGACATCTCCGTCATCGCCAAGTCCGCCGTCGAAGAGATCGTCTCCTCCCCCGCCTCCGCCGTCTGCAAGAAGCTCGCCTTCGACCTCATCCGCTCCACGCGCCTCACAGCCAACCTCTGGGACACCGTCTGCACCGGCATCCTCACCGATCTCGACTTCCCCGACCCTGACGTCAGCGTCGCCGCCTTCTCGATCCTCGCCGCCATCCCCTCCTACCGCCTCCCCAAGCTCATCTCCGACACCAAGAAGGAGATCAACAACTGCTTCGACTCGCCGTCTGATAACCTTCGGTTCGCGATCACCGAGACAATGGGGTGCATTCTCGCACGTGACGATCTTGTGACTCTGTGTGATAACAATGTCAATCTGCTGGATAAGGTCTTCGGCTGGTGGGGCCGGATCGGCCAGAACATGCTCGACGGCTCCGACGCCGTTTCGAAGGTCGGGTTCGAGTCGGTGGGGCTGTTGTTTCAGGAGTTCGATACCAAAAGGATGAGCAGACTCACCGGAGATAAGTTTATAGATAGTGAGAATTCGCTGCGATTCGATCCAATTGGGGCCACGGTGTTTCCGATTGTGTATGCCGTTAAGGTTGTGGCCTCCGGCTCCGTCGAGGTCATAAGGAAGCTATCCAAGTCTTCTGGTGGTTCTAATGCGACTATTGTGGATAGTAATGCCGAGAGGTTCGTCGGAGTTTCGAATGTGGTGACGCATTTGGTGCTCTTTTTGGCCTCATCTTTGGATCCAGCTTTGATTTTTGAGGTGGGGACTGACATGTTGTACTTGGCTGATGTTCCTGGTGGGAAGCCTGAGTGGGCTTCGCAATCCATTATTGCAATTCTCACACTTTGGGATAGGCAAGAGTTTGCTTCAGCTAGGGAAAGTATTGTTAGAGCTGTTGTTACAAATCTTCATCTTCTCGATCTTCATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

38.25

Weight (kDa)

4.94

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	128, 290, 296
AatII	GACGTC	1 cut(s)	294
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccBSI	CCGCTC	1 cut(s)	213
AccII	CGCG	2 cut(s)	220, 416
AciI	CCGC	8 cut(s)	108, 144, 171, 177, 211, 303, 321, 337
AclWI	GGATC	5 cut(s)	307, 527, 662, 857, 870
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	1 cut(s)	975
AcvI	CACGTG	1 cut(s)	449
AcyI	GRCGYC	2 cut(s)	291, 549
AfaI	GTAC	2 cut(s)	28, 902
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	894
AhdI	GACNNNNNGTC	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	916
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	6 cut(s)	193, 349, 748, 869, 995, 1016
AluI	AGCT	6 cut(s)	193, 349, 748, 869, 995, 1016
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	2 cut(s)	166, 419
AlwI	GGATC	5 cut(s)	307, 527, 662, 857, 870
AoxI	GGCC	5 cut(s)	514, 523, 678, 717, 849
ApeKI	GCWGC	2 cut(s)	110, 658
ApoI	RAATTY	1 cut(s)	652
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	514, 678
AsuHPI	GGTGA	4 cut(s)	256, 412, 616, 838
AsuII	TTCGAA	2 cut(s)	557, 818
BamHI	GGATCC	1 cut(s)	862
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	3 cut(s)	59, 493, 750
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	2 cut(s)	97, 645
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	6 cut(s)	131, 164, 379, 536, 556, 689
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	1 cut(s)	918
BcoDI	GTCTC	2 cut(s)	166, 419
BfaI	CTAG	1 cut(s)	996
BglI	GCCNNNNNGGC	1 cut(s)	522
BisI	GCNGC	4 cut(s)	111, 303, 321, 659
BlsI	GCNGC	4 cut(s)	112, 304, 322, 660
Bme1390I	CCNGG	1 cut(s)	918
BmeRI	GACNNNNNGTC	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	514, 678
BmiI	GGNNCC	5 cut(s)	515, 544, 679, 727, 864
BmrFI	CCNGG	1 cut(s)	918
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	3 cut(s)	59, 493, 750
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
Bpu14I	TTCGAA	2 cut(s)	557, 818
BsaAI	YACGTR	1 cut(s)	449
BsaHI	GRCGYC	2 cut(s)	291, 549
BsaJI	CCNNGG	1 cut(s)	681
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	918
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	4 cut(s)	207, 258, 324, 618
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	921
BseRI	GAGGAG	2 cut(s)	21, 154
BseXI	GCAGC	2 cut(s)	97, 645
BsgI	GTGCAG	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	220, 416
BshFI	GGCC	5 cut(s)	516, 525, 680, 719, 851
BsiHKAI	GWGCWC	1 cut(s)	843
BsiSI	CCGG	4 cut(s)	255, 517, 627, 723
BslFI	GGGAC	2 cut(s)	254, 901
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	166, 419
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	2 cut(s)	254, 901
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	5 cut(s)	516, 525, 680, 719, 851
Bsp119I	TTCGAA	2 cut(s)	557, 818
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp68I	TCGCGA	1 cut(s)	416
BspACI	CCGC	8 cut(s)	108, 144, 171, 177, 211, 303, 321, 337
BspANI	GGCC	5 cut(s)	516, 525, 680, 719, 851
BspCNI	CTCAG	1 cut(s)	922
BspFNI	CGCG	2 cut(s)	220, 416
BspLI	GGNNCC	5 cut(s)	515, 544, 679, 727, 864
BspPI	GGATC	5 cut(s)	307, 527, 662, 857, 870
BspT104I	TTCGAA	2 cut(s)	557, 818
BsrBI	CCGCTC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	681
BssNI	GRCGYC	2 cut(s)	291, 549
Bst2UI	CCWGG	1 cut(s)	918
Bst4CI	ACNGT	2 cut(s)	247, 685
Bst6I	CTCTTC	2 cut(s)	63, 147
BstACI	GRCGYC	2 cut(s)	291, 549
BstAPI	GCANNNNNTGC	1 cut(s)	838
BstBAI	YACGTR	1 cut(s)	449
BstBI	TTCGAA	2 cut(s)	557, 818
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	62, 930
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	4 cut(s)	207, 258, 324, 618
BstFNI	CGCG	2 cut(s)	220, 416
BstHHI	GCGC	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	166, 419
BstMWI	GCNNNNNNNGC	6 cut(s)	100, 143, 219, 513, 522, 838
BstNI	CCWGG	1 cut(s)	918
BstNSI	RCATGY	2 cut(s)	535, 898
BstSCI	CCNGG	1 cut(s)	916
BstUI	CGCG	2 cut(s)	220, 416
BstV1I	GCAGC	2 cut(s)	97, 645
BstV2I	GAAGAC	3 cut(s)	59, 493, 750
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	5 cut(s)	516, 525, 680, 719, 851
BtgI	CCRYGG	1 cut(s)	681
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	4 cut(s)	207, 258, 324, 618
BtuMI	TCGCGA	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	514, 678
CseI	GACGC	3 cut(s)	286, 557, 838
Csp6I	GTAC	2 cut(s)	27, 901
CviAII	CATG	2 cut(s)	532, 895
CviQI	GTAC	2 cut(s)	27, 901
DdeI	CTNAG	2 cut(s)	62, 930
DrdI	GACNNNNNNGTC	3 cut(s)	128, 290, 296
DriI	GACNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	3 cut(s)	128, 290, 296
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	2 cut(s)	63, 147
Eam1105I	GACNNNNNGTC	1 cut(s)	394
EarI	CTCTTC	2 cut(s)	63, 147
EciI	GGCGGA	2 cut(s)	133, 166
Eco57I	CTGAAG	1 cut(s)	975
Eco72I	CACGTG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	916
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	535, 898
FaiI	YATR	7 cut(s)	533, 641, 702, 740, 896, 1050, 1052
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	254, 901
FatI	CATG	2 cut(s)	531, 894
FauI	CCCGC	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	1050
Fnu4HI	GCNGC	4 cut(s)	111, 303, 321, 659
FokI	GGATG	4 cut(s)	194, 245, 311, 625
Fsp4HI	GCNGC	4 cut(s)	111, 303, 321, 659
FspBI	CTAG	1 cut(s)	996
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	4 cut(s)	111, 303, 321, 659
HaeIII	GGCC	5 cut(s)	516, 525, 680, 719, 851
HapII	CCGG	4 cut(s)	255, 517, 627, 723
HgaI	GACGC	3 cut(s)	286, 557, 838
HhaI	GCGC	1 cut(s)	222
Hin1I	GRCGYC	2 cut(s)	291, 549
Hin1II	CATG	2 cut(s)	535, 898
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	5 cut(s)	389, 463, 572, 621, 663
HpaII	CCGG	4 cut(s)	255, 517, 627, 723
HphI	GGTGA	4 cut(s)	256, 412, 616, 838
Hpy188I	TCNGA	5 cut(s)	358, 400, 547, 693, 812
Hpy188III	TCNNGA	5 cut(s)	272, 310, 415, 593, 1040
Hpy99I	CGWCG	6 cut(s)	152, 302, 542, 551, 734, 812
HpyAV	CCTTC	5 cut(s)	208, 316, 361, 416, 553
HpyCH4III	ACNGT	2 cut(s)	247, 685
HpyCH4IV	ACGT	2 cut(s)	291, 448
HpyCH4V	TGCA	5 cut(s)	20, 186, 252, 438, 956
HpyF10VI	GCNNNNNNNGC	6 cut(s)	100, 143, 219, 513, 522, 838
HpyF3I	CTNAG	2 cut(s)	62, 930
HpySE526I	ACGT	2 cut(s)	291, 448
Hsp92I	GRCGYC	2 cut(s)	291, 549
Hsp92II	CATG	2 cut(s)	535, 898
HspAI	GCGC	1 cut(s)	220
LmnI	GCTCC	3 cut(s)	218, 548, 731
Lsp1109I	GCAGC	2 cut(s)	97, 645
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	996
MaeII	ACGT	2 cut(s)	291, 448
MaeIII	GTNAC	4 cut(s)	449, 460, 826, 1021
MbiI	CCGCTC	1 cut(s)	213
MboII	GAAGA	8 cut(s)	50, 59, 164, 493, 750, 1022, 1028, 1037
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	3 cut(s)	652, 672, 957
MlyI	GAGTC	4 cut(s)	383, 457, 581, 615
MmeI	TCCRAC	3 cut(s)	381, 570, 790
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	4 cut(s)	255, 517, 627, 723
MspR9I	CCNGG	1 cut(s)	918
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	918
MvnI	CGCG	2 cut(s)	220, 416
MwoI	GCNNNNNNNGC	6 cut(s)	100, 143, 219, 513, 522, 838
NdeI	CATATG	1 cut(s)	1050
NlaIII	CATG	2 cut(s)	535, 898
NlaIV	GGNNCC	5 cut(s)	515, 544, 679, 727, 864
NmeAIII	GCCGAG	1 cut(s)	823
NmuCI	GTSAC	3 cut(s)	449, 460, 826
NruI	TCGCGA	1 cut(s)	416
NspI	RCATGY	2 cut(s)	535, 898
NspV	TTCGAA	2 cut(s)	557, 818
PciI	ACATGT	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	6 cut(s)	156, 279, 420, 450, 543, 689
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	663
PflFI	GACNNNGTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	4 cut(s)	112, 304, 322, 660
PleI	GAGTC	4 cut(s)	383, 457, 580, 615
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
PpsI	GAGTC	4 cut(s)	383, 457, 580, 615
Ppu21I	YACGTR	1 cut(s)	449
PscI	ACATGT	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	916
PspCI	CACGTG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	916
PspN4I	GGNNCC	5 cut(s)	515, 544, 679, 727, 864
PspPI	GGNCC	2 cut(s)	514, 678
PsuI	RGATCY	1 cut(s)	862
PsyI	GACNNNGTC	1 cut(s)	245
RruI	TCGCGA	1 cut(s)	416
RsaI	GTAC	2 cut(s)	28, 902
RsaNI	GTAC	2 cut(s)	27, 901
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	4 cut(s)	111, 303, 321, 659
Sau96I	GGNCC	2 cut(s)	514, 678
SchI	GAGTC	4 cut(s)	383, 457, 581, 615
ScrFI	CCNGG	1 cut(s)	918
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	1 cut(s)	267
SfiI	GGCCNNNNNGGCC	1 cut(s)	522
SfuI	TTCGAA	2 cut(s)	557, 818
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	652, 672, 957
SsiI	CCGC	8 cut(s)	108, 144, 171, 177, 211, 303, 321, 337
SspMI	CTAG	1 cut(s)	996
StyD4I	CCNGG	1 cut(s)	916
TaaI	ACNGT	2 cut(s)	247, 685
TaiI	ACGT	2 cut(s)	294, 451
TasI	AATT	3 cut(s)	652, 672, 957
TatI	WGTACW	2 cut(s)	26, 900
TauI	GCSGC	2 cut(s)	305, 323
TfiI	GAWTC	1 cut(s)	663
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TseFI	GTSAC	3 cut(s)	449, 460, 826
TseI	GCWGC	2 cut(s)	110, 658
Tsp45I	GTSAC	3 cut(s)	449, 460, 826
TspDTI	ATGAA	2 cut(s)	1022, 1037
TspGWI	ACGGA	2 cut(s)	118, 718
Tth111I	GACNNNGTC	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	237
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	2 cut(s)	535, 898
XspI	CTAG	1 cut(s)	996
ZraI	GACGTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.