Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021577.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

2657 .. 3444

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021577.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggtttggttcggtatagaaccgattttcaatttaaagtcaaaaaatcttaaccaaaccatatttatcggtcggttttggcctgtttggccgcaatccgccgccggccactacatctccgtcatcgccaagtccgctgtcgaagagatcgtcgcctccgccgtctgcaagaagcttgccttcgacctcatccgctccacgcgcctcaccgtcgacctctgggacaccgtctgcaccggcatcctcaccgatctcgacttccccgaccctgacgtcagtgctgccgcagtctcgattctcgccgccatcccatcctaccgcctccccaagctcatctccaacaccaagaaggagatcaacaactgcttcgactcgccgtctgataaccttcggttcgcgatcaccgagacggcggctggtggggccggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.59

Weight (kDa)

5.75

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AatII	GACGTC	1 cut(s)	276
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	2 cut(s)	202, 398
AcoI	YGGCCR	2 cut(s)	89, 106
AcyI	GRCGYC	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	31
AhdI	GACNNNNNGTC	1 cut(s)	376
AluBI	AGCT	2 cut(s)	175, 331
AluI	AGCT	2 cut(s)	175, 331
Alw26I	GTCTC	2 cut(s)	295, 401
AoxI	GGCC	4 cut(s)	80, 89, 106, 423
ApeKI	GCWGC	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	423
AsuHPI	GGTGA	3 cut(s)	199, 238, 394
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	314, 319
BceAI	ACGGC	3 cut(s)	146, 361, 426
BcoDI	GTCTC	2 cut(s)	295, 401
BglI	GCCNNNNNGGC	1 cut(s)	88
BisI	GCNGC	6 cut(s)	92, 102, 282, 285, 303, 414
BlsI	GCNGC	6 cut(s)	93, 103, 283, 286, 304, 415
BmeRI	GACNNNNNGTC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse118I	RCCGGY	2 cut(s)	104, 236
BseGI	GGATG	4 cut(s)	189, 240, 306, 311
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	202, 398
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	4 cut(s)	82, 91, 108, 425
BsiEI	CGRYCG	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	105, 237, 426
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	295, 401
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	4 cut(s)	82, 91, 108, 425
Bsp143I	GATC	4 cut(s)	147, 250, 354, 399
Bsp68I	TCGCGA	1 cut(s)	398
BspANI	GGCC	4 cut(s)	82, 91, 108, 425
BspFNI	CGCG	2 cut(s)	202, 398
BspLI	GGNNCC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	195
BsrFI	RCCGGY	2 cut(s)	104, 236
BssAI	RCCGGY	2 cut(s)	104, 236
BssMI	GATC	4 cut(s)	147, 250, 354, 399
BssNI	GRCGYC	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	211, 229
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	106, 177
BstF5I	GGATG	4 cut(s)	189, 240, 306, 311
BstFNI	CGCG	2 cut(s)	202, 398
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	4 cut(s)	150, 253, 357, 402
BstMAI	GTCTC	2 cut(s)	295, 401
BstMBI	GATC	4 cut(s)	147, 250, 354, 399
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 134, 201, 422
BstUI	CGCG	2 cut(s)	202, 398
BstV1I	GCAGC	1 cut(s)	268
BsuRI	GGCC	4 cut(s)	82, 91, 108, 425
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	189, 240, 306, 311
BtsIMutI	CAGTG	1 cut(s)	283
BtuMI	TCGCGA	1 cut(s)	398
Cac8I	GCNNGC	2 cut(s)	106, 177
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	2 cut(s)	104, 236
Cfr13I	GGNCC	1 cut(s)	423
CviJI	RGCY	7 cut(s)	82, 91, 108, 175, 331, 416, 425
CviKI_1	RGCY	7 cut(s)	82, 91, 108, 175, 331, 416, 425
DpnI	GATC	4 cut(s)	149, 252, 356, 401
DpnII	GATC	4 cut(s)	147, 250, 354, 399
DraI	TTTAAA	1 cut(s)	36
DrdI	GACNNNNNNGTC	1 cut(s)	272
DriI	GACNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	89, 106
Eam1104I	CTCTTC	1 cut(s)	138
Eam1105I	GACNNNNNGTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	2 cut(s)	88, 148
Esp3I	CGTCTC	1 cut(s)	401
FaiI	YATR	2 cut(s)	17, 62
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	6 cut(s)	92, 102, 282, 285, 303, 414
FokI	GGATG	4 cut(s)	176, 227, 293, 298
Fsp4HI	GCNGC	6 cut(s)	92, 102, 282, 285, 303, 414
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	92, 102, 282, 285, 303, 414
HaeIII	GGCC	4 cut(s)	82, 91, 108, 425
HapII	CCGG	3 cut(s)	105, 237, 426
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	273
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	295, 371
HpaII	CCGG	3 cut(s)	105, 237, 426
HphI	GGTGA	3 cut(s)	199, 238, 394
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	254, 292, 397
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	2 cut(s)	155, 215
HpyAV	CCTTC	3 cut(s)	190, 343, 398
HpyCH4III	ACNGT	2 cut(s)	211, 229
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	168, 234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 134, 201, 422
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	273
HspAI	GCGC	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	147, 250, 354, 399
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	6 cut(s)	96, 118, 205, 250, 282, 402
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	249
MaeII	ACGT	1 cut(s)	273
MalI	GATC	4 cut(s)	149, 252, 356, 401
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	4 cut(s)	147, 250, 354, 399
MboII	GAAGA	1 cut(s)	155
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	166, 197, 215, 227, 254, 332
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	2 cut(s)	35, 51
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	3 cut(s)	105, 237, 426
MvnI	CGCG	2 cut(s)	202, 398
MwoI	GCNNNNNNNGC	4 cut(s)	88, 134, 201, 422
NaeI	GCCGGC	1 cut(s)	106
NdeII	GATC	4 cut(s)	147, 250, 354, 399
NgoMIV	GCCGGC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	424
NruI	TCGCGA	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	4 cut(s)	147, 159, 261, 402
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	295
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	6 cut(s)	93, 103, 283, 286, 304, 415
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	423
PsyI	GACNNNGTC	1 cut(s)	227
RruI	TCGCGA	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	35, 51
SatI	GCNGC	6 cut(s)	92, 102, 282, 285, 303, 414
Sau3AI	GATC	4 cut(s)	147, 250, 354, 399
Sau96I	GGNCC	1 cut(s)	423
SchI	GAGTC	1 cut(s)	365
SetI	ASST	6 cut(s)	177, 189, 219, 276, 333, 390
SfaNI	GCATC	1 cut(s)	249
SfiI	GGCCNNNNNGGCC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	211, 229
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	6 cut(s)	141, 183, 213, 255, 293, 369
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	31
TauI	GCSGC	5 cut(s)	94, 104, 287, 305, 416
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	2 cut(s)	35, 51
Tru9I	TTAA	2 cut(s)	35, 51
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	213
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.