Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

53312448 .. 53321536

Gene Structure 9089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG414900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTAGACTTCGTCTGGAAGAAGCGGAGTGCTCTAATGGCGAGGTCGTTGGTTTTGCTGGTGGAGAGTTTCAGGGCCACGGTTTTTCCGATTGTGTATGCCGTTAAGGCTGTGGCCTCCGGCTCCGTCGAGGTCATAAGAAAGCTATCCAAGTCTTCTAGTGGTTCTAATGCGACTATTGTGGATGGTAATGCCGAGAGGTTCGTCGGAGTTTCGAATGTGGTGACGCATTTGGTGCTCTTTTTGGCCTGGTCTTTGGATCCAGCTTTGATTTTTGAGGTGGGGATTGACATGTTGTACTTGGCTAATGTTCCTGGTGGGAAGCCTGAGTGGGCTTCGCAATCCATTATTGTAATTCTCACACTTTGGGATAGGCAAGAGTTTGCTTCAGCTAGGGAAAGTATTGTTAGAGCTATTGTTACAAATCTTCATCTTCTCGATCTTCATATGCAGATTCCTACCCAAATCTCTTCTCACCACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.76

Weight (kDa)

6.98

Isoelectric Point (pI)

25.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	254, 267
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	291
AjnI	CCWGG	2 cut(s)	248, 313
AluBI	AGCT	4 cut(s)	145, 266, 392, 413
AluI	AGCT	4 cut(s)	145, 266, 392, 413
Alw21I	GWGCWC	2 cut(s)	34, 240
AlwI	GGATC	2 cut(s)	254, 267
AoxI	GGCC	3 cut(s)	75, 114, 246
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	235, 467
AsuII	TTCGAA	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	2 cut(s)	34, 240
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	250, 315
BfaI	CTAG	2 cut(s)	159, 393
BglI	GCCNNNNNGGC	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	250, 315
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	124, 261
BmrFI	CCNGG	2 cut(s)	250, 315
BpiI	GAAGAC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	250, 315
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	77, 116, 248
BsiHKAI	GWGCWC	2 cut(s)	34, 240
BsiSI	CCGG	1 cut(s)	120
BsnI	GGCC	3 cut(s)	77, 116, 248
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	34, 240
Bsp143I	GATC	2 cut(s)	259, 439
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	3 cut(s)	77, 116, 248
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	124, 261
BspPI	GGATC	2 cut(s)	254, 267
BspT104I	TTCGAA	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	259, 439
Bst2UI	CCWGG	2 cut(s)	250, 315
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	475
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstBI	TTCGAA	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	262, 442
BstMBI	GATC	2 cut(s)	259, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 107, 235
BstNI	CCWGG	2 cut(s)	250, 315
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	248, 313
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	77, 116, 248
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	75
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	292
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	261, 441
DpnII	GATC	2 cut(s)	259, 439
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	248, 313
FaeI	CATG	1 cut(s)	295
FaiI	YATR	5 cut(s)	99, 137, 293, 447, 449
FatI	CATG	1 cut(s)	291
FauNDI	CATATG	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	6
FokI	GGATG	1 cut(s)	197
FspBI	CTAG	2 cut(s)	159, 393
HaeIII	GGCC	3 cut(s)	77, 116, 248
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	295
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	2 cut(s)	235, 467
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	90, 209
Hpy188III	TCNNGA	2 cut(s)	16, 437
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	2 cut(s)	131, 209
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 107, 235
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	259, 439
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	9 cut(s)	44, 58, 133, 235, 262, 276, 300, 327, 339
MaeI	CTAG	2 cut(s)	159, 393
MaeIII	GTNAC	2 cut(s)	223, 418
MalI	GATC	2 cut(s)	261, 441
MboI	GATC	2 cut(s)	259, 439
MboII	GAAGA	6 cut(s)	31, 147, 419, 425, 434, 462
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	34, 240
MluCI	AATT	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	36, 124, 127, 192, 271
MseI	TTAA	1 cut(s)	105
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	2 cut(s)	250, 315
MvaI	CCWGG	2 cut(s)	250, 315
MwoI	GCNNNNNNNGC	3 cut(s)	38, 107, 235
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	2 cut(s)	259, 439
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	2 cut(s)	124, 261
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	215
PciI	ACATGT	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	454
PflFI	GACNNNGTC	1 cut(s)	11
PscI	ACATGT	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	248, 313
PspGI	CCWGG	2 cut(s)	248, 313
PspN4I	GGNNCC	2 cut(s)	124, 261
PspPI	GGNCC	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	259, 439
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	250, 315
SduI	GDGCHC	2 cut(s)	34, 240
SetI	ASST	8 cut(s)	47, 135, 147, 203, 268, 282, 394, 415
SfuI	TTCGAA	1 cut(s)	215
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	159, 393
StyD4I	CCNGG	2 cut(s)	248, 313
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	129, 215, 438
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	419, 434
TspGWI	ACGGA	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	2 cut(s)	159, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.