Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001279.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

21525 .. 22139

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001279.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgctggacggctccgacaacgtttcgaaggtcgggttcgagtcggtggggctgttgtttcaggagttcgataccaaaaggatgagcagactcgccggagataagttgatagatagtgagaattcgcttgcgattcgatccaattgggtctcttcaatggtggacttcgtctggaagaagcggagtgctctaatggcgaggtcgttggttttgccggtggagagtttcagggccacggtgtttccgattgtgtatgcagttaaggctgtggcctccggctccgtcaaggtcataaggaagctatccaagtcttctggtggttctaatgcgactattgtggatagtaatgccgagaggttcgtcggagtttcgaatgtggtggtgcatttggtgctctttttggcctggtctttggatccagctttgatttttgaggtggggattggcatgttgtacttggctgatgttcctggtgggaagcctgagtgggcttcgcaatccattattgcaattctcacactttgggataggcaagagtttgctttagctagggaaagtattgttagagctgttgctacaaatcttcatatgcaggtatgcttacttgagttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.32

Weight (kDa)

7.86

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	583
AciI	CCGC	1 cut(s)	181
AclI	AACGTT	1 cut(s)	21
AclWI	GGATC	3 cut(s)	132, 410, 423
AcsI	RAATTY	1 cut(s)	121
AfaI	GTAC	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	2 cut(s)	404, 469
AluBI	AGCT	4 cut(s)	301, 422, 548, 569
AluI	AGCT	4 cut(s)	301, 422, 548, 569
Alw21I	GWGCWC	2 cut(s)	190, 396
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	3 cut(s)	132, 410, 423
AoxI	GGCC	3 cut(s)	231, 270, 402
ApoI	RAATTY	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	231
AsuII	TTCGAA	2 cut(s)	26, 371
BamHI	GGATCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	190, 396
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	406, 471
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	583
Bme1390I	CCNGG	2 cut(s)	406, 471
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	3 cut(s)	13, 280, 417
BmrFI	CCNGG	2 cut(s)	406, 471
BpiI	GAAGAC	1 cut(s)	303
Bpu14I	TTCGAA	2 cut(s)	26, 371
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	406, 471
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	474
BshFI	GGCC	3 cut(s)	233, 272, 404
BsiHKAI	GWGCWC	2 cut(s)	190, 396
BsiSI	CCGG	3 cut(s)	96, 215, 276
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	233, 272, 404
Bso31I	GGTCTC	1 cut(s)	154
Bsp119I	TTCGAA	2 cut(s)	26, 371
Bsp1286I	GDGCHC	2 cut(s)	190, 396
Bsp143I	GATC	2 cut(s)	137, 415
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	3 cut(s)	233, 272, 404
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	3 cut(s)	13, 280, 417
BspMI	ACCTGC	1 cut(s)	583
BspPI	GGATC	3 cut(s)	132, 410, 423
BspT104I	TTCGAA	2 cut(s)	26, 371
BspTNI	GGTCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	137, 415
Bst2UI	CCWGG	2 cut(s)	406, 471
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstBI	TTCGAA	2 cut(s)	26, 371
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	140, 418
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	137, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 263, 391
BstNI	CCWGG	2 cut(s)	406, 471
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	404, 469
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	233, 272, 404
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	1 cut(s)	448
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	2 cut(s)	139, 417
DpnII	GATC	2 cut(s)	137, 415
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	404, 469
FaeI	CATG	1 cut(s)	451
FaiI	YATR	7 cut(s)	255, 293, 449, 588, 590, 598, 613
FatI	CATG	1 cut(s)	447
FauNDI	CATATG	1 cut(s)	588
FokI	GGATG	1 cut(s)	94
FspBI	CTAG	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	233, 272, 404
HapII	CCGG	3 cut(s)	96, 215, 276
Hin1II	CATG	1 cut(s)	451
HinfI	GANTC	3 cut(s)	41, 90, 133
HpaII	CCGG	3 cut(s)	96, 215, 276
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	16, 246, 365
Hpy188III	TCNNGA	2 cut(s)	62, 172
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	257, 385, 509, 592
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 263, 391
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	137, 415
LmnI	GCTCC	2 cut(s)	17, 284
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	21
MalI	GATC	2 cut(s)	139, 417
MboI	GATC	2 cut(s)	137, 415
MboII	GAAGA	4 cut(s)	144, 187, 303, 575
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	190, 396
MluCI	AATT	3 cut(s)	121, 142, 510
MlyI	GAGTC	2 cut(s)	50, 84
MmeI	TCCRAC	2 cut(s)	39, 343
MnlI	CCTC	4 cut(s)	192, 283, 348, 427
MseI	TTAA	1 cut(s)	261
MspI	CCGG	3 cut(s)	96, 215, 276
MspR9I	CCNGG	2 cut(s)	406, 471
MunI	CAATTG	1 cut(s)	142
MvaI	CCWGG	2 cut(s)	406, 471
MwoI	GCNNNNNNNGC	3 cut(s)	194, 263, 391
NdeI	CATATG	1 cut(s)	588
NdeII	GATC	2 cut(s)	137, 415
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	3 cut(s)	13, 280, 417
NmeAIII	GCCGAG	1 cut(s)	376
NspI	RCATGY	1 cut(s)	451
NspV	TTCGAA	2 cut(s)	26, 371
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	167
PleI	GAGTC	2 cut(s)	49, 84
PpsI	GAGTC	2 cut(s)	49, 84
Psp1406I	AACGTT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	404, 469
PspGI	CCWGG	2 cut(s)	404, 469
PspN4I	GGNNCC	3 cut(s)	13, 280, 417
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	137, 415
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	2 cut(s)	50, 84
ScrFI	CCNGG	2 cut(s)	406, 471
SduI	GDGCHC	2 cut(s)	190, 396
SfuI	TTCGAA	2 cut(s)	26, 371
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	3 cut(s)	121, 142, 510
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	404, 469
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	5 cut(s)	26, 39, 69, 136, 371
TasI	AATT	3 cut(s)	121, 142, 510
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.