Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005106.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

3575 .. 4105

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005106.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgagcagactcgccggagataagtttatagatagtgaaaattcgcttgcgattcgatccaattgggtctcttcaatggtggacttcgtctggaagaagcggaatgctctaatggcgaggtcattggttttgtcggtggagagtttcagggccacggtgtttccgattgtgtatgccgttaaggctgtggcctccggctctgttgaggtcataaggaagctatccaagtcttctggtcgttctaatgcgactattgtagatagtaatgccgagaggttcgtcggagtttcgaatgtggtgacgcatttggtgctctttttggcctggtctttggatccagctttgatttttgaggtggggattgacatgttgtacttggctgatgttcctggtgggaagcctgggtgggcttcgcaatccattattgtaattctcacactttgggataggcaatccattattgttagagctgttgttgcaaatcttcatcttctcgatcttcatatgcaggtatgcttacttgagttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.37

Weight (kDa)

8.85

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	499
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	3 cut(s)	51, 329, 342
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	3 cut(s)	323, 388, 400
AluBI	AGCT	3 cut(s)	220, 341, 470
AluI	AGCT	3 cut(s)	220, 341, 470
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	3 cut(s)	51, 329, 342
AoxI	GGCC	3 cut(s)	150, 189, 321
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	3 cut(s)	325, 390, 402
BcoDI	GTCTC	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	499
BglI	GCCNNNNNGGC	1 cut(s)	182
Bme1390I	CCNGG	3 cut(s)	325, 390, 402
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	3 cut(s)	325, 390, 402
BpiI	GAAGAC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	153, 401
BseBI	CCWGG	3 cut(s)	325, 390, 402
BseDI	CCNNGG	2 cut(s)	153, 401
BshFI	GGCC	3 cut(s)	152, 191, 323
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	15, 195
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	152, 191, 323
Bso31I	GGTCTC	1 cut(s)	73
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	56, 334, 496
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	152, 191, 323
BspLI	GGNNCC	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	3 cut(s)	51, 329, 342
BspT104I	TTCGAA	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	153, 401
BssMI	GATC	3 cut(s)	56, 334, 496
Bst2UI	CCWGG	3 cut(s)	325, 390, 402
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	153
BstKTI	GATC	3 cut(s)	59, 337, 499
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	56, 334, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 182, 310, 476
BstNI	CCWGG	3 cut(s)	325, 390, 402
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	3 cut(s)	323, 388, 400
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	152, 191, 323
BtgI	CCRYGG	1 cut(s)	153
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	367
CviQI	GTAC	1 cut(s)	373
DpnI	GATC	3 cut(s)	58, 336, 498
DpnII	GATC	3 cut(s)	56, 334, 496
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	323, 388, 400
FaeI	CATG	1 cut(s)	370
FaiI	YATR	8 cut(s)	29, 174, 212, 368, 504, 506, 514, 529
FatI	CATG	1 cut(s)	366
FauNDI	CATATG	1 cut(s)	504
HaeIII	GGCC	3 cut(s)	152, 191, 323
HapII	CCGG	2 cut(s)	15, 195
HgaI	GACGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	2 cut(s)	9, 52
HpaII	CCGG	2 cut(s)	15, 195
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	165, 284
Hpy188III	TCNNGA	2 cut(s)	91, 494
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	479, 508
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 182, 310, 476
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	56, 334, 496
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	58, 336, 498
MboI	GATC	3 cut(s)	56, 334, 496
MboII	GAAGA	6 cut(s)	63, 106, 222, 476, 482, 491
MfeI	CAATTG	1 cut(s)	61
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	40, 61, 429
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	5 cut(s)	111, 199, 202, 267, 346
MseI	TTAA	1 cut(s)	180
MspI	CCGG	2 cut(s)	15, 195
MspR9I	CCNGG	3 cut(s)	325, 390, 402
MunI	CAATTG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	3 cut(s)	325, 390, 402
MwoI	GCNNNNNNNGC	4 cut(s)	113, 182, 310, 476
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	3 cut(s)	56, 334, 496
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	336
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	370
NspV	TTCGAA	1 cut(s)	290
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
PscI	ACATGT	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	323, 388, 400
PspGI	CCWGG	3 cut(s)	323, 388, 400
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	56, 334, 496
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	3 cut(s)	325, 390, 402
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	8 cut(s)	122, 210, 222, 278, 343, 357, 472, 513
SfuI	TTCGAA	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	3 cut(s)	40, 61, 429
SsiI	CCGC	1 cut(s)	100
StyD4I	CCNGG	3 cut(s)	323, 388, 400
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	55, 290, 495
TasI	AATT	3 cut(s)	40, 61, 429
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	476, 491
Tth111I	GACNNNGTC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.