Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001279.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

19437 .. 21378

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001279.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgaggaagttatggctatcggaagaagtttccgttttatatcgaagaaaaccgcctgacccgacccgaacccggccgatccgacccgacttttccggccgactgcggcggtctccggccgtgaagcttggccagcagggtcgccacctccgtctggtcgtccctctggtgttctcttacggcgattctccgtctcggtggcagtttaaggcggtgcagattggagaaatcggacccgaccggaaaacacagttccgacgtcggcgcggcttcgattttcttgggttgagttcagaacaagctccctggtcgatccttggtcaatccgccgccggccgcgacatctccgtcatcgccaagtctgccgtagaagagatcgtcgcctccgccgtctgcaagaagctcgccttcgacctcatccactccacgcgcctcaccgtcgacctctgggacaccgtctgcaccggcatcctcaccgatctcgacttccccgaccttaacgtcagcgctgccgccatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.42

Weight (kDa)

10.15

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	347, 500
AatII	GACGTC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	3 cut(s)	267, 339, 430
AclWI	GGATC	2 cut(s)	73, 307
AcoI	YGGCCR	5 cut(s)	74, 97, 117, 130, 334
AcyI	GRCGYC	1 cut(s)	259
AfeI	AGCGCT	1 cut(s)	508
AfiI	CCNNNNNNNGG	2 cut(s)	72, 154
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	3 cut(s)	127, 302, 403
AluI	AGCT	3 cut(s)	127, 302, 403
Alw26I	GTCTC	2 cut(s)	117, 198
AlwI	GGATC	2 cut(s)	73, 307
Aor51HI	AGCGCT	1 cut(s)	508
AoxI	GGCC	5 cut(s)	74, 97, 117, 130, 334
ApeKI	GCWGC	1 cut(s)	509
AspLEI	GCGC	3 cut(s)	267, 432, 509
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	427, 466
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	496
BceAI	ACGGC	4 cut(s)	104, 196, 350, 374
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BciT130I	CCWGG	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	117, 198
BfaI	CTAG	1 cut(s)	520
BfoI	RGCGCY	1 cut(s)	510
BisI	GCNGC	6 cut(s)	107, 268, 330, 337, 510, 513
BlsI	GCNGC	6 cut(s)	108, 269, 331, 338, 511, 514
Bme1390I	CCNGG	2 cut(s)	73, 307
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	73, 307
BmsI	GCATC	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	305, 316
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 154
Bse118I	RCCGGY	2 cut(s)	332, 464
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	305, 316
BseGI	GGATG	2 cut(s)	417, 468
BseLI	CCNNNNNNNGG	2 cut(s)	72, 154
BseX3I	CGGCCG	4 cut(s)	74, 97, 117, 334
BseXI	GCAGC	1 cut(s)	496
BsgI	GTGCAG	2 cut(s)	236, 445
Bsh1236I	CGCG	3 cut(s)	267, 339, 430
Bsh1285I	CGRYCG	5 cut(s)	77, 100, 120, 241, 337
BshFI	GGCC	5 cut(s)	76, 99, 119, 132, 336
BsiEI	CGRYCG	5 cut(s)	77, 100, 120, 241, 337
BsiSI	CCGG	6 cut(s)	73, 96, 116, 241, 333, 465
BslFI	GGGAC	2 cut(s)	146, 464
BslI	CCNNNNNNNGG	2 cut(s)	72, 154
BsmAI	GTCTC	2 cut(s)	117, 198
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	146, 464
BsnI	GGCC	5 cut(s)	76, 99, 119, 132, 336
Bso31I	GGTCTC	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	78, 312, 375, 478
BspANI	GGCC	5 cut(s)	76, 99, 119, 132, 336
BspFNI	CGCG	3 cut(s)	267, 339, 430
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	73, 307
BspTNI	GGTCTC	1 cut(s)	117
BsrFI	RCCGGY	2 cut(s)	332, 464
BssAI	RCCGGY	2 cut(s)	332, 464
BssECI	CCNNGG	2 cut(s)	305, 316
BssMI	GATC	4 cut(s)	78, 312, 375, 478
BssNI	GRCGYC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	3 cut(s)	252, 439, 457
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	134, 334, 405
BstF5I	GGATG	2 cut(s)	417, 468
BstFNI	CGCG	3 cut(s)	267, 339, 430
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	3 cut(s)	267, 432, 509
BstKTI	GATC	4 cut(s)	81, 315, 378, 481
BstMAI	GTCTC	2 cut(s)	117, 198
BstMBI	GATC	4 cut(s)	78, 312, 375, 478
BstMCI	CGRYCG	5 cut(s)	77, 100, 120, 241, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 362
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	71, 305
BstUI	CGCG	3 cut(s)	267, 339, 430
BstV1I	GCAGC	1 cut(s)	496
BstZI	CGGCCG	4 cut(s)	74, 97, 117, 334
BsuRI	GGCC	5 cut(s)	76, 99, 119, 132, 336
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	417, 468
Cac8I	GCNNGC	3 cut(s)	134, 334, 405
CfoI	GCGC	3 cut(s)	267, 432, 509
Cfr10I	RCCGGY	2 cut(s)	332, 464
Cfr13I	GGNCC	1 cut(s)	233
DpnI	GATC	4 cut(s)	80, 314, 377, 480
DpnII	GATC	4 cut(s)	78, 312, 375, 478
DrdI	GACNNNNNNGTC	2 cut(s)	347, 500
DseDI	GACNNNNNNGTC	2 cut(s)	347, 500
EaeI	YGGCCR	5 cut(s)	74, 97, 117, 130, 334
EagI	CGGCCG	4 cut(s)	74, 97, 117, 334
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EciI	GGCGGA	2 cut(s)	316, 376
EclXI	CGGCCG	4 cut(s)	74, 97, 117, 334
Eco130I	CCWWGG	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	233
Eco47III	AGCGCT	1 cut(s)	508
Eco52I	CGGCCG	4 cut(s)	74, 97, 117, 334
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	198
FaiI	YATR	2 cut(s)	13, 40
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	2 cut(s)	146, 464
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	6 cut(s)	107, 268, 330, 337, 510, 513
FokI	GGATG	2 cut(s)	404, 455
Fsp4HI	GCNGC	6 cut(s)	107, 268, 330, 337, 510, 513
FspBI	CTAG	1 cut(s)	520
GlaI	GCGC	3 cut(s)	266, 431, 508
GluI	GCNGC	6 cut(s)	107, 268, 330, 337, 510, 513
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	5 cut(s)	76, 99, 119, 132, 336
HapII	CCGG	6 cut(s)	73, 96, 116, 241, 333, 465
HhaI	GCGC	3 cut(s)	267, 432, 509
Hin1I	GRCGYC	1 cut(s)	259
Hin6I	GCGC	3 cut(s)	265, 430, 507
HinP1I	GCGC	3 cut(s)	265, 430, 507
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	6 cut(s)	73, 96, 116, 241, 333, 465
HphI	GGTGA	2 cut(s)	427, 466
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	5 cut(s)	22, 83, 233, 257, 295
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	4 cut(s)	261, 264, 383, 443
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	3 cut(s)	252, 439, 457
HpyCH4IV	ACGT	2 cut(s)	259, 501
HpyCH4V	TGCA	3 cut(s)	217, 396, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 362
HpySE526I	ACGT	2 cut(s)	259, 501
Hsp92I	GRCGYC	1 cut(s)	259
HspAI	GCGC	3 cut(s)	265, 430, 507
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	78, 312, 375, 478
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	1 cut(s)	520
MaeII	ACGT	2 cut(s)	259, 501
MalI	GATC	4 cut(s)	80, 314, 377, 480
MboI	GATC	4 cut(s)	78, 312, 375, 478
MboII	GAAGA	3 cut(s)	35, 57, 383
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	106, 280
MnlI	CCTC	7 cut(s)	158, 174, 394, 425, 443, 455, 482
Mox20I	TGGCCA	1 cut(s)	132
MroNI	GCCGGC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	2 cut(s)	207, 498
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	6 cut(s)	73, 96, 116, 241, 333, 465
MspR9I	CCNGG	2 cut(s)	73, 307
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	3 cut(s)	267, 339, 430
MwoI	GCNNNNNNNGC	2 cut(s)	133, 362
NaeI	GCCGGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	4 cut(s)	78, 312, 375, 478
NgoMIV	GCCGGC	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	3 cut(s)	148, 387, 489
PdiI	GCCGGC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	6 cut(s)	108, 269, 331, 338, 511, 514
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	455
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	207, 498
SatI	GCNGC	6 cut(s)	107, 268, 330, 337, 510, 513
Sau3AI	GATC	4 cut(s)	78, 312, 375, 478
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	73, 307
SetI	ASST	9 cut(s)	129, 150, 262, 304, 405, 417, 447, 498, 504
SfaNI	GCATC	1 cut(s)	477
SinI	GGWCC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	520
StyD4I	CCNGG	2 cut(s)	71, 305
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	252, 439, 457
TaiI	ACGT	2 cut(s)	262, 504
TaqI	TCGA	6 cut(s)	43, 273, 311, 411, 441, 483
TauI	GCSGC	5 cut(s)	109, 270, 332, 339, 515
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	207, 498
Tru9I	TTAA	2 cut(s)	207, 498
TseI	GCWGC	1 cut(s)	509
TspGWI	ACGGA	4 cut(s)	22, 140, 180, 337
Tth111I	GACNNNGTC	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	520
ZraI	GACGTC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.