Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

17162378 .. 17162782

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG109800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGACATACTCTTTGCTCAGATCCAAGTGAACCTCTACTCCAACAACGCCCTCAGCCAGTCCGGCACCCTCCTCCAAGCCATGCAGCAGTCCGCCACCGGCCTCGACATCTCTGTCCTTGCCAAGTCTGCTGTCAAAGAGATTGTCGCCTTCCCTGCCTCCGCCGTCTACAAAAAGCTTACCTTCGACCTCATCCACTCCACGAGCCTTACCGCCGACCCCTGGGACACCATCTGCACTGGAGTTCTCACCGATCCGACCCGTATTAGACATCATCACCAACTTTCTGAGCTGGAGCACGGCGTTGGGGACCTAGGCCACCAGGACTCTCTTCTTCTTCTTCTGCTCCAGCAATTCATGTCTGGCCTCCAAGACATCAACCGATGCCTGAAGGTGAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.66

Weight (kDa)

5.76

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	3 cut(s)	93, 162, 213
AclWI	GGATC	2 cut(s)	16, 248
AfiI	CCNNNNNNNGG	1 cut(s)	222
AjnI	CCWGG	2 cut(s)	221, 321
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	2 cut(s)	178, 292
AluI	AGCT	2 cut(s)	178, 292
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	16, 248
AoxI	GGCC	3 cut(s)	100, 316, 364
ApeKI	GCWGC	1 cut(s)	85
ArsI	GACNNNNNNTTYG	3 cut(s)	28, 129, 161
AspA2I	CCTAGG	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	241, 269
AvaII	GGWCC	1 cut(s)	310
AvrII	CCTAGG	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	2 cut(s)	149, 316
BciT130I	CCWGG	2 cut(s)	223, 323
BfaI	CTAG	1 cut(s)	314
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	86
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	2 cut(s)	223, 323
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	67, 311
BmrFI	CCNGG	2 cut(s)	223, 323
BmsI	GCATC	1 cut(s)	374
BpmI	CTGGAG	3 cut(s)	261, 314, 332
Bpu10I	CCTNAGC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	221, 222, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	58, 244
BseBI	CCWGG	2 cut(s)	223, 323
BseDI	CCNNGG	3 cut(s)	221, 222, 313
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	3 cut(s)	32, 67, 279
BseNI	ACTGG	2 cut(s)	58, 244
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	102, 318, 366
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	63, 99
BslFI	GGGAC	2 cut(s)	239, 323
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmFI	GGGAC	2 cut(s)	239, 323
BsnI	GGCC	3 cut(s)	102, 318, 366
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	21, 253
BspACI	CCGC	3 cut(s)	93, 162, 213
BspANI	GGCC	3 cut(s)	102, 318, 366
BspCNI	CTCAG	3 cut(s)	31, 66, 280
BspHI	TCATGA	1 cut(s)	401
BspLI	GGNNCC	2 cut(s)	67, 311
BspPI	GGATC	2 cut(s)	16, 248
BspT107I	GGYRCC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	58, 244
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	221, 222, 313
BssMI	GATC	2 cut(s)	21, 253
BssSI	CACGAG	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	313
Bst2BI	CACGAG	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	223, 323
Bst6I	CTCTTC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	18, 53, 288
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	24, 256
BstMBI	GATC	2 cut(s)	21, 253
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 128, 155
BstNI	CCWGG	2 cut(s)	223, 323
BstSCI	CCNGG	2 cut(s)	221, 321
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	102, 318, 366
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	237
CciI	TCATGA	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	310
CviAII	CATG	3 cut(s)	82, 358, 402
CviJI	RGCY	8 cut(s)	57, 80, 102, 178, 207, 292, 318, 366
CviKI_1	RGCY	8 cut(s)	57, 80, 102, 178, 207, 292, 318, 366
DdeI	CTNAG	3 cut(s)	18, 53, 288
DpnI	GATC	2 cut(s)	23, 255
DpnII	GATC	2 cut(s)	21, 253
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	2 cut(s)	82, 151
Eco130I	CCWWGG	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	221, 321
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	3 cut(s)	85, 361, 405
FaiI	YATR	4 cut(s)	8, 83, 359, 403
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	239, 323
FatI	CATG	3 cut(s)	81, 357, 401
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	86
GsuI	CTGGAG	3 cut(s)	261, 314, 332
HaeIII	GGCC	3 cut(s)	102, 318, 366
HapII	CCGG	2 cut(s)	63, 99
Hin1II	CATG	3 cut(s)	85, 361, 405
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	2 cut(s)	63, 99
HphI	GGTGA	2 cut(s)	241, 269
Hpy166II	GTNNAC	2 cut(s)	31, 169
Hpy188I	TCNGA	3 cut(s)	21, 258, 289
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	2 cut(s)	31, 169
HpyAV	CCTTC	3 cut(s)	160, 193, 385
HpyCH4V	TGCA	2 cut(s)	85, 237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 128, 155
HpyF3I	CTNAG	3 cut(s)	18, 53, 288
Hsp92II	CATG	3 cut(s)	85, 361, 405
Kzo9I	GATC	2 cut(s)	21, 253
LmnI	GCTCC	2 cut(s)	295, 351
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	1 cut(s)	314
MalI	GATC	2 cut(s)	23, 255
MboI	GATC	2 cut(s)	21, 253
MboII	GAAGA	4 cut(s)	323, 326, 329, 332
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	66, 281
MnlI	CCTC	8 cut(s)	44, 62, 80, 83, 113, 169, 200, 377
MspI	CCGG	2 cut(s)	63, 99
MspR9I	CCNGG	2 cut(s)	223, 323
MvaI	CCWGG	2 cut(s)	223, 323
MwoI	GCNNNNNNNGC	3 cut(s)	63, 128, 155
NdeII	GATC	2 cut(s)	21, 253
NlaIII	CATG	3 cut(s)	85, 361, 405
NlaIV	GGNNCC	2 cut(s)	67, 311
PagI	TCATGA	1 cut(s)	401
PasI	CCCWGGG	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	87
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	221, 321
PspGI	CCWGG	2 cut(s)	221, 321
PspN4I	GGNNCC	2 cut(s)	67, 311
PspPI	GGNCC	1 cut(s)	310
PspPPI	RGGWCCY	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	21
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	21, 253
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	223, 323
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	7 cut(s)	36, 180, 185, 192, 294, 315, 396
SfaNI	GCATC	1 cut(s)	374
SinI	GGWCC	1 cut(s)	310
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	3 cut(s)	93, 162, 213
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	221, 321
StyI	CCWWGG	1 cut(s)	313
TaqI	TCGA	2 cut(s)	105, 186
TasI	AATT	1 cut(s)	353
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	346, 390
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	310
XmaJI	CCTAGG	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.