Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

44662936 .. 44663373

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGAGGTCGTTGGTTTTGCCGGTGGAGAGTTTCAGGGCCACGGTGTTTCCGATTGTGTATGCCGTTAAGGCTGTGGCCTCCGGCTCCGTCGAGGTCATAAGGAAGCTATCCAAGTCTTCTGTTGGTTCTAATGCGACTATTGTGGATAGTAATGCCGAGAGGTTCGTCGGAGTTTCGAATGTGGTGACGCATTTGGTGCTCTTTTTGGCCTGGTCTTTGGATCCAGCTTTGATTTTTGAGGTGGGGATTGACATGTTGTACTTGGCTGATGTTCCTGGTGGGAAGCCTGAGTGGGCTTCGCAATCCATTATTGCAATTCTCACACTTTGGGATAGGCAAGAGTTTGCTTCAGCTAGGGAAAGTATTGTTAGAGCTGTTGTTACAAATCTTCATCTTCTCGATCTTCATATGCAGGTATGCTTACTTGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.82

Weight (kDa)

5.53

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
AclWI	GGATC	2 cut(s)	218, 231
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	255
AjnI	CCWGG	2 cut(s)	212, 277
AluBI	AGCT	4 cut(s)	109, 230, 356, 377
AluI	AGCT	4 cut(s)	109, 230, 356, 377
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	218, 231
AoxI	GGCC	3 cut(s)	39, 78, 210
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	214, 279
BfaI	CTAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	406
BglI	GCCNNNNNGGC	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	214, 279
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	88, 225
BmrFI	CCNGG	2 cut(s)	214, 279
BpiI	GAAGAC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	42
Bse118I	RCCGGY	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	214, 279
BseDI	CCNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	41, 80, 212
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	23, 84
BsnI	GGCC	3 cut(s)	41, 80, 212
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	223, 403
BspANI	GGCC	3 cut(s)	41, 80, 212
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	88, 225
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	218, 231
BspT104I	TTCGAA	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	223, 403
Bst2UI	CCWGG	2 cut(s)	214, 279
Bst4CI	ACNGT	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	42
BstKTI	GATC	2 cut(s)	226, 406
BstMBI	GATC	2 cut(s)	223, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 199
BstNI	CCWGG	2 cut(s)	214, 279
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	212, 277
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	41, 80, 212
BtgI	CCRYGG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	256
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	2 cut(s)	225, 405
DpnII	GATC	2 cut(s)	223, 403
Eco57I	CTGAAG	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	212, 277
FaeI	CATG	1 cut(s)	259
FaiI	YATR	7 cut(s)	63, 101, 257, 411, 413, 421, 436
FatI	CATG	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	411
FspBI	CTAG	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	41, 80, 212
HapII	CCGG	2 cut(s)	23, 84
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	259
HpaII	CCGG	2 cut(s)	23, 84
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	54, 173
Hpy188III	TCNNGA	1 cut(s)	401
Hpy99I	CGWCG	2 cut(s)	95, 173
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	317, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 199
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	223, 403
LmnI	GCTCC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	187, 382
MalI	GATC	2 cut(s)	225, 405
MboI	GATC	2 cut(s)	223, 403
MboII	GAAGA	4 cut(s)	111, 383, 389, 398
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	318
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	88, 91, 156, 235
MseI	TTAA	1 cut(s)	69
MspI	CCGG	2 cut(s)	23, 84
MspR9I	CCNGG	2 cut(s)	214, 279
MvaI	CCWGG	2 cut(s)	214, 279
MwoI	GCNNNNNNNGC	2 cut(s)	71, 199
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	2 cut(s)	223, 403
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	2 cut(s)	88, 225
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	179
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PscI	ACATGT	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	212, 277
PspGI	CCWGG	2 cut(s)	212, 277
PspN4I	GGNNCC	2 cut(s)	88, 225
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	223, 403
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	214, 279
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	9 cut(s)	11, 99, 111, 167, 232, 246, 358, 379, 420
SfuI	TTCGAA	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	318
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	212, 277
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	93, 179, 402
TasI	AATT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	383, 398
TspGWI	ACGGA	1 cut(s)	79
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.