Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012347.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Forward (+)

41858 .. 42622

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012347.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgcaaatctgtgtgaggagagatttgcaatccgccgccggtcacgacatctccgtcatcggcaagtccgccgtcgaagagatagtcgcctcccccgcctccgccgtctgcaagaagctcgccttcgacctcatccgctccacgcgcctcaccgtcgacctctgggacaccgtctgcaccggcatcctcacctatctcgacttccccgaccctaacgttaccgcctccgctgtctcgatcctcgcgccatcccctcctaccgcctccccaagctcatctccgacaccaagaaggagatcaacaactgcttcgactcgcagtttgataaccttcggttcgcgatcacagagacagctgctggtagggccggatatggtcaatctgtgtgactctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.03

Weight (kDa)

8.47

Isoelectric Point (pI)

77.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	3 cut(s)	145, 245, 340
AciI	CCGC	9 cut(s)	33, 36, 69, 96, 102, 136, 222, 228, 261
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	1 cut(s)	232
AluBI	AGCT	3 cut(s)	118, 273, 355
AluI	AGCT	3 cut(s)	118, 273, 355
Alw26I	GTCTC	2 cut(s)	238, 343
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	355
ArsI	GACNNNNNNTTYG	4 cut(s)	69, 101, 304, 336
AspLEI	GCGC	2 cut(s)	147, 247
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	142, 181
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	2 cut(s)	56, 89
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BcoDI	GTCTC	2 cut(s)	238, 343
BisI	GCNGC	2 cut(s)	36, 356
BlsI	GCNGC	2 cut(s)	37, 357
BmgT120I	GGNCC	1 cut(s)	365
BmsI	GCATC	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bse118I	RCCGGY	2 cut(s)	38, 179
BseGI	GGATG	3 cut(s)	132, 183, 248
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	342
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	3 cut(s)	145, 245, 340
BshFI	GGCC	1 cut(s)	367
BsiSI	CCGG	3 cut(s)	39, 180, 368
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	238, 343
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	237, 296, 341
Bsp68I	TCGCGA	1 cut(s)	340
BspACI	CCGC	9 cut(s)	33, 36, 69, 96, 102, 136, 222, 228, 261
BspANI	GGCC	1 cut(s)	367
BspFNI	CGCG	3 cut(s)	145, 245, 340
BspPI	GGATC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	38, 179
BssAI	RCCGGY	2 cut(s)	38, 179
BssMI	GATC	3 cut(s)	237, 296, 341
Bst4CI	ACNGT	2 cut(s)	154, 172
Bst6I	CTCTTC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	120
BstF5I	GGATG	3 cut(s)	132, 183, 248
BstFNI	CGCG	3 cut(s)	145, 245, 340
BstHHI	GCGC	2 cut(s)	147, 247
BstKTI	GATC	3 cut(s)	240, 299, 344
BstMAI	GTCTC	2 cut(s)	238, 343
BstMBI	GATC	3 cut(s)	237, 296, 341
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 144, 364
BstUI	CGCG	3 cut(s)	145, 245, 340
BstV1I	GCAGC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	132, 183, 248
BtuMI	TCGCGA	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	358
CfoI	GCGC	2 cut(s)	147, 247
Cfr10I	RCCGGY	2 cut(s)	38, 179
Cfr13I	GGNCC	1 cut(s)	365
CviJI	RGCY	4 cut(s)	118, 273, 355, 367
CviKI_1	RGCY	4 cut(s)	118, 273, 355, 367
DpnI	GATC	3 cut(s)	239, 298, 343
DpnII	GATC	3 cut(s)	237, 296, 341
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EciI	GGCGGA	3 cut(s)	22, 58, 91
FaiI	YATR	1 cut(s)	374
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	179
FauI	CCCGC	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	36, 356
FokI	GGATG	3 cut(s)	119, 170, 235
Fsp4HI	GCNGC	2 cut(s)	36, 356
GlaI	GCGC	2 cut(s)	146, 246
GluI	GCNGC	2 cut(s)	36, 356
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	3 cut(s)	39, 180, 368
HhaI	GCGC	2 cut(s)	147, 247
Hin6I	GCGC	2 cut(s)	145, 245
HinP1I	GCGC	2 cut(s)	145, 245
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	313, 389
HpaII	CCGG	3 cut(s)	39, 180, 368
HphI	GGTGA	2 cut(s)	142, 181
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	4 cut(s)	44, 197, 235, 339
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	2 cut(s)	77, 158
HpyAV	CCTTC	3 cut(s)	133, 285, 340
HpyCH4III	ACNGT	2 cut(s)	154, 172
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	4 cut(s)	4, 28, 111, 177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 144, 364
HpySE526I	ACGT	1 cut(s)	216
HspAI	GCGC	2 cut(s)	145, 245
Kzo9I	GATC	3 cut(s)	237, 296, 341
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	5 cut(s)	52, 148, 193, 344, 381
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	192
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	3 cut(s)	41, 217, 386
MalI	GATC	3 cut(s)	239, 298, 343
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	3 cut(s)	237, 296, 341
MboII	GAAGA	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	307, 383
MmeI	TCCRAC	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	230, 355
MspI	CCGG	3 cut(s)	39, 180, 368
MvnI	CGCG	3 cut(s)	145, 245, 340
MwoI	GCNNNNNNNGC	3 cut(s)	95, 144, 364
NdeII	GATC	3 cut(s)	237, 296, 341
NmuCI	GTSAC	2 cut(s)	41, 386
NruI	TCGCGA	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 204
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	37, 357
PleI	GAGTC	2 cut(s)	307, 383
PpsI	GAGTC	2 cut(s)	307, 383
Psp1406I	AACGTT	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	358
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	355
RruI	TCGCGA	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	155
SatI	GCNGC	2 cut(s)	36, 356
Sau3AI	GATC	3 cut(s)	237, 296, 341
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	2 cut(s)	307, 383
SetI	ASST	8 cut(s)	120, 132, 162, 194, 219, 275, 332, 357
SfaNI	GCATC	1 cut(s)	192
SsiI	CCGC	9 cut(s)	33, 36, 69, 96, 102, 136, 222, 228, 261
TaaI	ACNGT	2 cut(s)	154, 172
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	6 cut(s)	75, 126, 156, 198, 236, 311
TauI	GCSGC	1 cut(s)	38
TseFI	GTSAC	2 cut(s)	41, 386
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	2 cut(s)	41, 386
TspGWI	ACGGA	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.