Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003749.1

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

38099 .. 38579

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003749.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgctcgaaggctccgacaacgtttcgaaggtcgggttcgagtcggtggggcggttgtttcaggagttcgataccaaaaggatgagtagaccccccggagataagttgatagatagtgagaattcgcttgcgattcgatccaattgggtctcttcaatggtggacttcgtttggaagaagcggtgtgctctaatggcgaggtcgttggttttgccggtggggattgacatgttgtacttggctgatgttcctggtgggaagcctgagtgggcttcgcaatccattattgcaattctcacactttgggataagcaagagtttgcttcagctagggaaagtattgttagagctgttgttacaaatcttcatcttctcgatcttcatatgcaggtatgcttacttgagttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.28

Weight (kDa)

5.66

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	88
AciI	CCGC	2 cut(s)	52, 181
AclI	AACGTT	1 cut(s)	21
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	329, 350
AluI	AGCT	2 cut(s)	329, 350
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	121
AsuC2I	CCSGG	1 cut(s)	96
AsuII	TTCGAA	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	379
Bme1390I	CCNGG	2 cut(s)	96, 252
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	96, 252
Bpu14I	TTCGAA	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	96, 215
BsmAI	GTCTC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	154
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	137, 376
BspACI	CCGC	2 cut(s)	52, 181
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	137, 376
Bst2UI	CCWGG	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	140, 379
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	137, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	94, 250
BtsCI	GGATG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	6 cut(s)	12, 242, 262, 272, 329, 350
CviKI_1	RGCY	6 cut(s)	12, 242, 262, 272, 329, 350
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	139, 378
DpnII	GATC	2 cut(s)	137, 376
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	232
FaiI	YATR	5 cut(s)	230, 384, 386, 394, 409
FatI	CATG	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	88
FokI	GGATG	1 cut(s)	94
FspBI	CTAG	1 cut(s)	330
HapII	CCGG	2 cut(s)	96, 215
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	2 cut(s)	41, 133
HpaII	CCGG	2 cut(s)	96, 215
Hpy166II	GTNNAC	2 cut(s)	89, 163
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	62, 374
Hpy8I	GTNNAC	2 cut(s)	89, 163
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	290, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	137, 376
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	7 cut(s)	47, 109, 228, 237, 264, 276, 374
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	2 cut(s)	139, 378
MboI	GATC	2 cut(s)	137, 376
MboII	GAAGA	5 cut(s)	144, 187, 356, 362, 371
MfeI	CAATTG	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	121, 142, 291
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	192
MspI	CCGG	2 cut(s)	96, 215
MspR9I	CCNGG	2 cut(s)	96, 252
MunI	CAATTG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	96
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	2 cut(s)	137, 376
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	13
NspI	RCATGY	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	26
PciI	ACATGT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PscI	ACATGT	1 cut(s)	228
Psp1406I	AACGTT	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
Sau3AI	GATC	2 cut(s)	137, 376
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	96, 252
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	6 cut(s)	24, 33, 203, 331, 352, 393
SfuI	TTCGAA	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	121, 142, 291
SsiI	CCGC	2 cut(s)	52, 181
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	94, 250
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	6 cut(s)	6, 26, 39, 69, 136, 375
TasI	AATT	3 cut(s)	121, 142, 291
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	356, 371
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.