Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004552

Physical Location & Seq

Genomic Coordinates Reverse (-)

11854544 .. 11858735

Gene Structure 4192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGGTGCATTCTCGCACGTGACGATCTCATGACTCTGTGTGAGAACAATGTCAATCTGCTGGATAAGGTCTTCGGCTGGTGGGGCCGGATTAGCCAGAACATGCTCGACTGCTTCGATGCCGTTTCGAAGGTCGGGTTTGAGTCGGTCTCTTCAATGGTGGACTTCGTCTGGAAGAAGCAGAGTGCTCTAATGGCGAGGTCGTTGGTTTTGCCGGTGGAAAGTTTCAGGGCCACGGTGTTTCCGATTGTGTATGTCGTTAAGGCTATGGCCTCCGGCTCCGTCGAGGTCATAAGGAAGCTATCCAAGTCTTCTGGTGGTTCTAATGCGACTATTGTAGATAGTAATGCCGAGAGGTTCGTCGGAGTTTCAATTGTGGTGACTCATTTGGAGCTCTTTTTGGCCTCGTCTTTGGATCCAGCTTCGATTTTTGAGGTGGGGATTGACATGTTGTACTTGGCTGATGTTCCTGGTGGGAAGCCTGAATGGGCTTCACAATCCATTATTGCAATTCTCACACTCTGGGATAGGCAAGAGTTTGCTTCAGCTAGGGAAAGTATTGTTAGAGCTGTTGTTACAAATCTTCATCTTCTCGATCTTCATATGCAGGATTTCGGTTTTTCTGATGGTACTGTAGGTGGTCTCTTTGTTGAGAAGGGAGGCCAAGTGGCGATAGTAACTCAAGGGCTGTTGGGTTCTAAGAATATGGGAAGCCCCATAATCTTGGAACAGGTCTTGGCTGACATCAAAGCAACGGGGTGCTTGAACACTTGTGTACCTCTTCCATTCATCCCAGACGAGGTAAGCTTGAAGTCTCTGGCTATGATCCCTGCATTGAGAGGGACTGGAAAGACTCTCTCTCTTCGTATTCGCGGAGGTGGCTCCAGCTCCGGCGGCATAGACGACGGCGATGGCTCTGGTGTTGGAAACAACATGCTGAGGTTCTATACCAATGATGCTTCAGGCTTGAAGATCACAATCCAACTTGATGTCCACCGTTGCCATCGACCTCAACTACTCGGCCTCAAGTCTGATTACAGCCTCCAGAACGATCTCCTCAGATTAGACGGTTTCTCCTCCCCTGGAGTTAGGGTTTTCCAGTGGCAGTCCAGATTGGAACTGACCTCGACAACTCGGTCCAGATCGGAATCGACCTCGACGACTTACTGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

392

Amino Acids

42.34

Weight (kDa)

5.8

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004552)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g16310
rosa_laevigata	RLG00000005207 RLG00000006265 RLG00000007294 RLG00000010808 RLG00000016989 RLG00000032122 RLG00000032123 RLG00000032332
rosa_multiflora	Rmu_co8199840.1_g000001 Rmu_co8356175.1_g000001 Rmu_sc0001279.1_g000003 Rmu_sc0001279.1_g000004 Rmu_sc0003749.1_g000007 Rmu_sc0003749.1_g000008 Rmu_sc0005106.1_g000002 Rmu_sc0005106.1_g000003 Rmu_sc0005120.1_g000008 Rmu_sc0006325.1_g000002 Rmu_sc0007646.1_g000004 Rmu_sc0007646.1_g000005 Rmu_sc0010370.1_g000002 Rmu_sc0010370.1_g000003 Rmu_sc0012347.1_g000007 Rmu_sc0021577.1_g000001 Rmu_sc0022618.1_g000001
rosa_samantha	Rh1DG233800 Rh2CG335800 Rh5BG209300 Rh6BG109800 Rh7AG396500 Rh7CG414900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1135, 1168
AccII	CGCG	1 cut(s)	873
AciI	CCGC	2 cut(s)	873, 894
AclWI	GGATC	3 cut(s)	410, 423, 820
AcuI	CTGAAG	2 cut(s)	528, 945
AcvI	CACGTG	1 cut(s)	20
AfaI	GTAC	3 cut(s)	455, 631, 777
AfiI	CCNNNNNNNGG	1 cut(s)	799
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	5 cut(s)	156, 372, 766, 811, 970
AjnI	CCWGG	2 cut(s)	469, 1081
AluBI	AGCT	7 cut(s)	301, 394, 422, 548, 569, 807, 888
AluI	AGCT	7 cut(s)	301, 394, 422, 548, 569, 807, 888
Alw21I	GWGCWC	2 cut(s)	190, 396
Alw26I	GTCTC	3 cut(s)	154, 647, 819
AlwI	GGATC	3 cut(s)	410, 423, 820
AoxI	GGCC	6 cut(s)	85, 231, 270, 402, 661, 1021
AspS9I	GGNCC	4 cut(s)	85, 231, 1137, 1170
AsuHPI	GGTGA	1 cut(s)	391
AsuII	TTCGAA	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	1137, 1170
BaeI	ACNNNNGTAYC	2 cut(s)	759, 792
BamHI	GGATCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	396
BbrPI	CACGTG	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	64, 303
Bbv12I	GWGCWC	2 cut(s)	190, 396
BbvCI	CCTCAGC	1 cut(s)	938
BccI	CCATC	3 cut(s)	620, 905, 1011
BceAI	ACGGC	2 cut(s)	107, 922
BciT130I	CCWGG	2 cut(s)	471, 1083
BcoDI	GTCTC	3 cut(s)	154, 647, 819
BfaI	CTAG	2 cut(s)	549, 1174
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	1 cut(s)	895
BlsI	GCNGC	1 cut(s)	896
Bme1390I	CCNGG	2 cut(s)	471, 1083
Bme18I	GGWCC	2 cut(s)	1137, 1170
BmgT120I	GGNCC	4 cut(s)	85, 231, 1137, 1170
BmiI	GGNNCC	4 cut(s)	86, 280, 417, 883
BmrFI	CCNGG	2 cut(s)	471, 1083
BmsI	GCATC	2 cut(s)	109, 946
BpiI	GAAGAC	2 cut(s)	64, 303
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpmI	CTGGAG	3 cut(s)	868, 1028, 1104
Bpu10I	CCTNAGC	1 cut(s)	938
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	666, 1010
BsaAI	YACGTR	1 cut(s)	20
BsaBI	GATNNNNATC	2 cut(s)	977, 1147
BsaI	GGTCTC	2 cut(s)	154, 647
BsaJI	CCNNGG	2 cut(s)	234, 1081
BsaXI	ACNNNNNCTCC	6 cut(s)	651, 681, 1058, 1077, 1088, 1107
Bsc4I	CCNNNNNNNGG	1 cut(s)	799
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	3 cut(s)	850, 1099, 1172
Bse8I	GATNNNNATC	2 cut(s)	977, 1147
BseBI	CCWGG	2 cut(s)	471, 1083
BseDI	CCNNGG	2 cut(s)	234, 1081
BseGI	GGATG	1 cut(s)	789
BseJI	GATNNNNATC	2 cut(s)	977, 1147
BseLI	CCNNNNNNNGG	1 cut(s)	799
BseMII	CTCAG	2 cut(s)	929, 1072
BseNI	ACTGG	3 cut(s)	850, 1099, 1172
BseRI	GAGGAG	2 cut(s)	1046, 1066
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	6 cut(s)	87, 233, 272, 404, 663, 1023
BsiHKAI	GWGCWC	2 cut(s)	190, 396
BsiSI	CCGG	4 cut(s)	88, 215, 276, 891
BslFI	GGGAC	1 cut(s)	856
BslI	CCNNNNNNNGG	1 cut(s)	799
BsmAI	GTCTC	3 cut(s)	154, 647, 819
BsmFI	GGGAC	1 cut(s)	856
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	6 cut(s)	87, 233, 272, 404, 663, 1023
Bso31I	GGTCTC	2 cut(s)	154, 647
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	190, 396
Bsp143I	GATC	7 cut(s)	25, 415, 595, 825, 972, 1051, 1142
BspACI	CCGC	2 cut(s)	873, 894
BspANI	GGCC	6 cut(s)	87, 233, 272, 404, 663, 1023
BspCNI	CTCAG	2 cut(s)	930, 1071
BspFNI	CGCG	1 cut(s)	873
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	4 cut(s)	86, 280, 417, 883
BspPI	GGATC	3 cut(s)	410, 423, 820
BspT104I	TTCGAA	1 cut(s)	128
BspTNI	GGTCTC	2 cut(s)	154, 647
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	3 cut(s)	850, 1099, 1172
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	234, 1081
BssMI	GATC	7 cut(s)	25, 415, 595, 825, 972, 1051, 1142
Bst2UI	CCWGG	2 cut(s)	471, 1083
Bst4CI	ACNGT	4 cut(s)	238, 634, 998, 1070
Bst6I	CTCTTC	3 cut(s)	157, 786, 867
BstBAI	YACGTR	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	128
BstDEI	CTNAG	3 cut(s)	699, 938, 1058
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	789
BstFNI	CGCG	1 cut(s)	873
BstKTI	GATC	7 cut(s)	28, 418, 598, 828, 975, 1054, 1145
BstMAI	GTCTC	3 cut(s)	154, 647, 819
BstMBI	GATC	7 cut(s)	25, 415, 595, 825, 972, 1051, 1142
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 93, 194, 879, 894
BstNI	CCWGG	2 cut(s)	471, 1083
BstNSI	RCATGY	3 cut(s)	106, 451, 937
BstSCI	CCNGG	2 cut(s)	469, 1081
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	1 cut(s)	873
BstV2I	GAAGAC	2 cut(s)	64, 303
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	6 cut(s)	87, 233, 272, 404, 663, 1023
BtgI	CCRYGG	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	924
BtsCI	GGATG	1 cut(s)	789
BtsIMutI	CAGTG	1 cut(s)	1106
CciI	TCATGA	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	4 cut(s)	85, 231, 1137, 1170
Csp6I	GTAC	3 cut(s)	454, 630, 776
CviAII	CATG	4 cut(s)	31, 103, 448, 934
CviQI	GTAC	3 cut(s)	454, 630, 776
DdeI	CTNAG	3 cut(s)	699, 938, 1058
DpnI	GATC	7 cut(s)	27, 417, 597, 827, 974, 1053, 1144
DpnII	GATC	7 cut(s)	25, 415, 595, 825, 972, 1051, 1142
DrdI	GACNNNNNNGTC	2 cut(s)	1135, 1168
DseDI	GACNNNNNNGTC	2 cut(s)	1135, 1168
Eam1104I	CTCTTC	3 cut(s)	157, 786, 867
EarI	CTCTTC	3 cut(s)	157, 786, 867
Ecl136II	GAGCTC	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	396
Eco31I	GGTCTC	2 cut(s)	154, 647
Eco47I	GGWCC	2 cut(s)	1137, 1170
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	2 cut(s)	528, 945
Eco72I	CACGTG	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	469, 1081
EcoT38I	GRGCYC	1 cut(s)	396
FaeI	CATG	4 cut(s)	34, 106, 451, 937
FaqI	GGGAC	1 cut(s)	856
FatI	CATG	4 cut(s)	30, 102, 447, 933
FauNDI	CATATG	1 cut(s)	603
Fnu4HI	GCNGC	1 cut(s)	895
FokI	GGATG	1 cut(s)	776
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	895
FspBI	CTAG	2 cut(s)	549, 1174
GluI	GCNGC	1 cut(s)	895
GsuI	CTGGAG	3 cut(s)	868, 1028, 1104
HaeIII	GGCC	6 cut(s)	87, 233, 272, 404, 663, 1023
HapII	CCGG	4 cut(s)	88, 215, 276, 891
Hin1II	CATG	4 cut(s)	34, 106, 451, 937
HindIII	AAGCTT	1 cut(s)	805
HinfI	GANTC	5 cut(s)	34, 143, 382, 853, 1148
HpaII	CCGG	4 cut(s)	88, 215, 276, 891
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	163, 776, 994
Hpy188I	TCNGA	6 cut(s)	246, 365, 625, 1033, 1061, 1147
Hpy188III	TCNNGA	6 cut(s)	31, 172, 593, 1045, 1110, 1140
Hpy8I	GTNNAC	3 cut(s)	163, 776, 994
Hpy99I	CGWCG	4 cut(s)	287, 365, 908, 1162
HpyAV	CCTTC	2 cut(s)	124, 649
HpyCH4III	ACNGT	4 cut(s)	238, 634, 998, 1070
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	9, 509, 607, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 93, 194, 879, 894
HpyF3I	CTNAG	3 cut(s)	699, 938, 1058
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	4 cut(s)	34, 106, 451, 937
Kzo9I	GATC	7 cut(s)	25, 415, 595, 825, 972, 1051, 1142
LmnI	GCTCC	4 cut(s)	284, 391, 887, 893
LweI	GCATC	2 cut(s)	109, 946
MaeI	CTAG	2 cut(s)	549, 1174
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	4 cut(s)	20, 379, 574, 676
MalI	GATC	7 cut(s)	27, 417, 597, 827, 974, 1053, 1144
MboI	GATC	7 cut(s)	25, 415, 595, 825, 972, 1051, 1142
MfeI	CAATTG	1 cut(s)	372
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	190, 396
MluCI	AATT	2 cut(s)	372, 510
MlyI	GAGTC	4 cut(s)	28, 152, 376, 847
MmeI	TCCRAC	3 cut(s)	343, 904, 1006
MseI	TTAA	1 cut(s)	261
MspI	CCGG	4 cut(s)	88, 215, 276, 891
MspR9I	CCNGG	2 cut(s)	471, 1083
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	9
MvaI	CCWGG	2 cut(s)	471, 1083
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	5 cut(s)	84, 93, 194, 879, 894
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	7 cut(s)	25, 415, 595, 825, 972, 1051, 1142
NlaIII	CATG	4 cut(s)	34, 106, 451, 937
NlaIV	GGNNCC	4 cut(s)	86, 280, 417, 883
NmeAIII	GCCGAG	2 cut(s)	376, 999
NmuCI	GTSAC	2 cut(s)	20, 379
NspI	RCATGY	3 cut(s)	106, 451, 937
NspV	TTCGAA	1 cut(s)	128
PagI	TCATGA	1 cut(s)	30
PciI	ACATGT	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	4 cut(s)	21, 114, 242, 1157
PctI	GAATGC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	1148
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	896
PleI	GAGTC	4 cut(s)	28, 151, 376, 847
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
PpsI	GAGTC	4 cut(s)	28, 151, 376, 847
Ppu21I	YACGTR	1 cut(s)	20
PscI	ACATGT	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	469, 1081
PspCI	CACGTG	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	469, 1081
PspN4I	GGNNCC	4 cut(s)	86, 280, 417, 883
PspPI	GGNCC	4 cut(s)	85, 231, 1137, 1170
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	3 cut(s)	455, 631, 777
RsaNI	GTAC	3 cut(s)	454, 630, 776
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	895
Sau3AI	GATC	7 cut(s)	25, 415, 595, 825, 972, 1051, 1142
Sau96I	GGNCC	4 cut(s)	85, 231, 1137, 1170
SchI	GAGTC	4 cut(s)	28, 152, 376, 847
ScrFI	CCNGG	2 cut(s)	471, 1083
SduI	GDGCHC	2 cut(s)	190, 396
SfaNI	GCATC	2 cut(s)	109, 946
SfcI	CTRYAG	1 cut(s)	633
SfuI	TTCGAA	1 cut(s)	128
SinI	GGWCC	2 cut(s)	1137, 1170
SmlI	CTYRAG	2 cut(s)	681, 1025
SmoI	CTYRAG	2 cut(s)	681, 1025
Sse9I	AATT	2 cut(s)	372, 510
SsiI	CCGC	2 cut(s)	873, 894
SspMI	CTAG	2 cut(s)	549, 1174
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	469, 1081
TaaI	ACNGT	4 cut(s)	238, 634, 998, 1070
TaiI	ACGT	1 cut(s)	22
TaqII	GACCGA	2 cut(s)	136, 1125
TasI	AATT	2 cut(s)	372, 510
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	897
TfiI	GAWTC	1 cut(s)	1148
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	1106
TseFI	GTSAC	2 cut(s)	20, 379
Tsp45I	GTSAC	2 cut(s)	20, 379
TspDTI	ATGAA	3 cut(s)	575, 590, 778
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	1106
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	1137, 1170
XceI	RCATGY	3 cut(s)	106, 451, 937
XspI	CTAG	2 cut(s)	549, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.