pycom07g09460

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002088
Physical Location & Seq
Forward (+)
8716395 .. 8718675
2281 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09460.1

Sequence Viewer

Length: 1158 bp
ATGGCTATTGCATGTTTAGAGCCCTTGATTGCTTGCATAAGCAGGCTAAACAAAGGTTACCTCATTGATTTCAACCTTGCTAAGCATTTACTGCAGAAGTACACAATTGGAAGTAAATCAAAATCAAGTCCTCACGTGTCCTTTAGTCATGTCCCTCTCCCTCAATCTAAATCTGCTCTACTGAACAGAGAAAAAAAGTTTGTAAGAGGTGATCTTACAGATACCAAATTAGGGCAAACAACAGATTCTAAGCAAACTCATGAGCCTCATAAGGATGCAAGGAAGTGGGATAATGATGGTCCCTTGAAAATCTATCCTGATATGGGCGGTGGTGATAAATATAAAATCCAAGGTGCCAAGGGCTCAGGTATGACCTCGGTGAAGGATGTGATAAGCACCAGAACTCCATCTACAGAAAGGGCAAGGGAACCTCTGCCTTGCCTAGGAAGAAAAGAGTTGATCAGCCTGGTGCAGGATGCGGTTCTCGGTCCAAACCATGATGCAAAAAACACTCCTGCTTCCCAAAGGAAAAGGATTGCCGCCCCTCCAGGCAAGATTGACAATAAAATCATCTATACAAGTCCAATGTCTCTGCATTTTACTGGTGGCTCTGTATCTGCCGCCAACTTATTGAAAAACAAAGCTAATGGGAGACAAAAGAAAGAAGGTTCATGCGTCGGAACCAAGGGATTCCGTGCTCCAGAGGTTTTGTTGAGATCTTTGCATCAAGGCCCGAAGGTTGACGTCTGGTCAGCCGGAGTCACCCTCCTTTACCTGATCATGGGAAGAACTCCTTTTACCGGAGAACCGGAACAGAGTATAAAAGACATTGCAACGTTACGGGGCAGTGAAGATCTATGGGAAGTGGCCAAGCTGCACGACTGTGAATCCTTATTTCCAGTGGAGTTGCTGGATATCAAATCCTTGCCGTCGATGAAGCTGCAAAGTTGGTGCAAGGCTCGGACAAAAAGAGGTCAGTTTTTCAGGCAAATTCCGAGATCGCTATTCGATCTTGTGGACAAGTGCCTGACGGTAAACCCAAGGCGGAGGATCAGCGCAGAGGAAGCTCTGCAGCATGAGTTCTTTGCCCCGTGCCATGAGAGCTTGATGAAGCAGAGAATGTTCAGGCGTGAGGTTATGAGCACCCAGAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 map04110 map04111 map04113
Pfam Domains
Protein Families
Pkinase

Protein Analysis

386

Amino Acids

42.97

Weight (kDa)

9.67

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 220 - 362 2.1e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 747
AccB1I GGYRCC 1 cut(s) 353
AciI CCGC 5 cut(s) 327, 479, 540, 621, 1045
AclI AACGTT 1 cut(s) 836
AclWI GGATC 1 cut(s) 1058
AcoI YGGCCR 1 cut(s) 867
AcsI RAATTY 1 cut(s) 990
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 744
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 6 cut(s) 231, 323, 443, 472, 781, 800
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 3 cut(s) 73, 307, 634
AhdI GACNNNNNGTC 1 cut(s) 748
AjnI CCWGG 2 cut(s) 465, 547
AleI CACNNNNGTG 1 cut(s) 882
AluBI AGCT 5 cut(s) 644, 874, 940, 1067, 1104
AluI AGCT 5 cut(s) 644, 874, 940, 1067, 1104
Alw21I GWGCWC 2 cut(s) 700, 1145
Alw26I GTCTC 2 cut(s) 594, 646
AlwI GGATC 1 cut(s) 1058
AoxI GGCC 2 cut(s) 730, 867
ApeKI GCWGC 3 cut(s) 874, 940, 1072
ApoI RAATTY 1 cut(s) 990
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 1 cut(s) 1058
AspS9I GGNCC 3 cut(s) 299, 488, 731
AsuHPI GGTGA 4 cut(s) 221, 344, 391, 754
AvaII GGWCC 2 cut(s) 299, 488
AvrII CCTAGG 1 cut(s) 442
BalI TGGCCA 1 cut(s) 869
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 2 cut(s) 24, 365
BbrPI CACGTG 1 cut(s) 136
Bbv12I GWGCWC 2 cut(s) 700, 1145
BbvI GCAGC 3 cut(s) 861, 927, 1084
BccI CCATC 2 cut(s) 290, 415
BceAI ACGGC 1 cut(s) 913
BcgI CGANNNNNNTGC 2 cut(s) 922, 956
BciT130I CCWGG 2 cut(s) 467, 549
BclI TGATCA 2 cut(s) 459, 777
BcoDI GTCTC 2 cut(s) 594, 646
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 3 cut(s) 92, 411, 1070
BglII AGATCT 2 cut(s) 716, 853
BisI GCNGC 5 cut(s) 540, 621, 875, 941, 1073
BlnI CCTAGG 1 cut(s) 442
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 5 cut(s) 541, 622, 876, 942, 1074
Bme1390I CCNGG 2 cut(s) 467, 549
Bme18I GGWCC 2 cut(s) 299, 488
BmeRI GACNNNNNGTC 1 cut(s) 748
BmgT120I GGNCC 3 cut(s) 299, 488, 731
BmiI GGNNCC 4 cut(s) 301, 355, 429, 682
BmrFI CCNGG 2 cut(s) 467, 549
BmsI GCATC 4 cut(s) 265, 466, 490, 733
BplI GAGNNNNNCTC 2 cut(s) 750, 782
BpmI CTGGAG 2 cut(s) 531, 684
Bpu10I CCTNAGC 1 cut(s) 364
Bpu1102I GCTNAGC 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 744
BsaJI CCNNGG 6 cut(s) 349, 357, 375, 442, 684, 1040
BsaWI WCCGGW 2 cut(s) 800, 808
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 6 cut(s) 231, 323, 443, 472, 781, 800
Bse1I ACTGG 2 cut(s) 607, 899
Bse3DI GCAATG 1 cut(s) 828
BseBI CCWGG 2 cut(s) 467, 549
BseDI CCNNGG 6 cut(s) 349, 357, 375, 442, 684, 1040
BseGI GGATG 3 cut(s) 280, 391, 481
BseLI CCNNNNNNNGG 6 cut(s) 231, 323, 443, 472, 781, 800
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 607, 899
BseXI GCAGC 3 cut(s) 861, 927, 1084
BsgI GTGCAG 2 cut(s) 491, 860
BshFI GGCC 2 cut(s) 732, 869
BshNI GGYRCC 1 cut(s) 353
BsiHKAI GWGCWC 2 cut(s) 700, 1145
BsiSI CCGG 3 cut(s) 756, 801, 809
BslFI GGGAC 2 cut(s) 137, 285
BslI CCNNNNNNNGG 6 cut(s) 231, 323, 443, 472, 781, 800
BsmAI GTCTC 2 cut(s) 594, 646
BsmFI GGGAC 2 cut(s) 137, 285
BsnI GGCC 2 cut(s) 732, 869
Bsp1286I GDGCHC 4 cut(s) 24, 365, 700, 1145
Bsp143I GATC 8 cut(s) 211, 459, 716, 777, 853, 998, 1009, 1050
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 5 cut(s) 327, 479, 540, 621, 1045
BspANI GGCC 2 cut(s) 732, 869
BspCNI CTCAG 1 cut(s) 377
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 4 cut(s) 301, 355, 429, 682
BspMAI CTGCAG 2 cut(s) 96, 1074
BspPI GGATC 1 cut(s) 1058
BspT107I GGYRCC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 828
BsrI ACTGG 2 cut(s) 607, 899
BssECI CCNNGG 6 cut(s) 349, 357, 375, 442, 684, 1040
BssMI GATC 8 cut(s) 211, 459, 716, 777, 853, 998, 1009, 1050
BssNI GRCGYC 1 cut(s) 744
BssT1I CCWWGG 5 cut(s) 349, 357, 442, 684, 1040
Bst2UI CCWGG 2 cut(s) 467, 549
Bst4CI ACNGT 2 cut(s) 884, 1033
BstACI GRCGYC 1 cut(s) 744
BstAPI GCANNNNNTGC 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 34, 44
BstDEI CTNAG 3 cut(s) 81, 249, 364
BstEII GGTNACC 1 cut(s) 56
BstENI CCTNNNNNAGG 2 cut(s) 441, 470
BstF5I GGATG 3 cut(s) 280, 391, 481
BstHHI GCGC 1 cut(s) 1058
BstKTI GATC 8 cut(s) 214, 462, 719, 780, 856, 1001, 1012, 1053
BstMAI GTCTC 2 cut(s) 594, 646
BstMBI GATC 8 cut(s) 211, 459, 716, 777, 853, 998, 1009, 1050
BstMWI GCNNNNNNNGC 3 cut(s) 91, 1064, 1101
BstNI CCWGG 2 cut(s) 467, 549
BstNSI RCATGY 1 cut(s) 15
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 465, 547
BstSFI CTRYAG 3 cut(s) 92, 411, 1070
BstV1I GCAGC 3 cut(s) 861, 927, 1084
BstX2I RGATCY 2 cut(s) 716, 853
BstYI RGATCY 2 cut(s) 716, 853
BsuRI GGCC 2 cut(s) 732, 869
BtsCI GGATG 3 cut(s) 280, 391, 481
BtsI GCAGTG 1 cut(s) 853
BtsIMutI CAGTG 2 cut(s) 853, 906
Cac8I GCNNGC 2 cut(s) 34, 44
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 1058
Cfr13I GGNCC 3 cut(s) 299, 488, 731
CseI GACGC 1 cut(s) 664
Csp6I GTAC 1 cut(s) 100
CviAII CATG 8 cut(s) 12, 149, 260, 497, 672, 781, 1076, 1097
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 3 cut(s) 81, 249, 364
DpnI GATC 8 cut(s) 213, 461, 718, 779, 855, 1000, 1011, 1052
DpnII GATC 8 cut(s) 211, 459, 716, 777, 853, 998, 1009, 1050
DriI GACNNNNNGTC 1 cut(s) 748
EaeI YGGCCR 1 cut(s) 867
Eam1105I GACNNNNNGTC 1 cut(s) 748
EciI GGCGGA 1 cut(s) 1060
Eco130I CCWWGG 5 cut(s) 349, 357, 442, 684, 1040
Eco24I GRGCYC 2 cut(s) 24, 365
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 2 cut(s) 299, 488
Eco72I CACGTG 1 cut(s) 136
Eco91I GGTNACC 1 cut(s) 56
EcoNI CCTNNNNNAGG 2 cut(s) 441, 470
EcoO65I GGTNACC 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 465, 547
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 5 cut(s) 349, 357, 442, 684, 1040
EcoT38I GRGCYC 2 cut(s) 24, 365
ErhI CCWWGG 5 cut(s) 349, 357, 442, 684, 1040
FaeI CATG 8 cut(s) 15, 152, 263, 500, 675, 784, 1079, 1100
FalI AAGNNNNNCTT 2 cut(s) 778, 810
FaqI GGGAC 2 cut(s) 137, 285
FatI CATG 8 cut(s) 11, 148, 259, 496, 671, 780, 1075, 1096
FbaI TGATCA 2 cut(s) 459, 777
Fnu4HI GCNGC 5 cut(s) 540, 621, 875, 941, 1073
FokI GGATG 3 cut(s) 287, 398, 488
FriOI GRGCYC 2 cut(s) 24, 365
Fsp4HI GCNGC 5 cut(s) 540, 621, 875, 941, 1073
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 1057
GluI GCNGC 5 cut(s) 540, 621, 875, 941, 1073
GsuI CTGGAG 2 cut(s) 531, 684
HaeIII GGCC 2 cut(s) 732, 869
HapII CCGG 3 cut(s) 756, 801, 809
HgaI GACGC 1 cut(s) 664
HhaI GCGC 1 cut(s) 1058
Hin1I GRCGYC 1 cut(s) 744
Hin1II CATG 8 cut(s) 15, 152, 263, 500, 675, 784, 1079, 1100
Hin6I GCGC 1 cut(s) 1056
HinP1I GCGC 1 cut(s) 1056
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HinfI GANTC 4 cut(s) 245, 690, 759, 887
HpaII CCGG 3 cut(s) 756, 801, 809
HphI GGTGA 4 cut(s) 221, 344, 391, 754
Hpy166II GTNNAC 4 cut(s) 102, 742, 1018, 1036
Hpy188I TCNGA 3 cut(s) 680, 963, 996
Hpy188III TCNNGA 3 cut(s) 260, 317, 701
Hpy8I GTNNAC 4 cut(s) 102, 742, 1018, 1036
Hpy99I CGWCG 2 cut(s) 680, 934
HpyAV CCTTC 3 cut(s) 376, 659, 730
HpyCH4III ACNGT 2 cut(s) 884, 1033
HpyCH4IV ACGT 3 cut(s) 135, 744, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 1064, 1101
HpyF3I CTNAG 3 cut(s) 81, 249, 364
HpySE526I ACGT 3 cut(s) 135, 744, 836
Hsp92I GRCGYC 1 cut(s) 744
Hsp92II CATG 8 cut(s) 15, 152, 263, 500, 675, 784, 1079, 1100
HspAI GCGC 1 cut(s) 1056
Ksp22I TGATCA 2 cut(s) 459, 777
Kzo9I GATC 8 cut(s) 211, 459, 716, 777, 853, 998, 1009, 1050
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 3 cut(s) 861, 927, 1084
LweI GCATC 4 cut(s) 265, 466, 490, 733
MaeI CTAG 1 cut(s) 443
MaeII ACGT 3 cut(s) 135, 744, 836
MaeIII GTNAC 3 cut(s) 56, 760, 837
MalI GATC 8 cut(s) 213, 461, 718, 779, 855, 1000, 1011, 1052
MboI GATC 8 cut(s) 211, 459, 716, 777, 853, 998, 1009, 1050
MboII GAAGA 3 cut(s) 459, 798, 863
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 2 cut(s) 716, 853
MhlI GDGCHC 4 cut(s) 24, 365, 700, 1145
MlsI TGGCCA 1 cut(s) 869
MluCI AATT 3 cut(s) 105, 227, 990
MluNI TGGCCA 1 cut(s) 869
MlyI GAGTC 1 cut(s) 768
MmeI TCCRAC 1 cut(s) 658
Mox20I TGGCCA 1 cut(s) 869
MscI TGGCCA 1 cut(s) 869
MslI CAYNNNNRTG 2 cut(s) 273, 882
Msp20I TGGCCA 1 cut(s) 869
MspI CCGG 3 cut(s) 756, 801, 809
MspR9I CCNGG 2 cut(s) 467, 549
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 2 cut(s) 467, 549
MwoI GCNNNNNNNGC 3 cut(s) 91, 1064, 1101
NdeII GATC 8 cut(s) 211, 459, 716, 777, 853, 998, 1009, 1050
NlaIII CATG 8 cut(s) 15, 152, 263, 500, 675, 784, 1079, 1100
NlaIV GGNNCC 4 cut(s) 301, 355, 429, 682
NmuCI GTSAC 1 cut(s) 760
NspI RCATGY 1 cut(s) 15
OliI CACNNNNGTG 1 cut(s) 882
PagI TCATGA 1 cut(s) 259
PfeI GAWTC 3 cut(s) 245, 690, 887
PkrI GCNGC 5 cut(s) 541, 622, 876, 942, 1074
PleI GAGTC 1 cut(s) 767
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 1 cut(s) 767
Ppu21I YACGTR 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 836
Psp6I CCWGG 2 cut(s) 465, 547
PspCI CACGTG 1 cut(s) 136
PspEI GGTNACC 1 cut(s) 56
PspGI CCWGG 2 cut(s) 465, 547
PspN4I GGNNCC 4 cut(s) 301, 355, 429, 682
PspPI GGNCC 3 cut(s) 299, 488, 731
PsrI GAACNNNNNNTAC 4 cut(s) 394, 426, 781, 813
PstI CTGCAG 2 cut(s) 96, 1074
PsuI RGATCY 2 cut(s) 716, 853
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 273, 882
SatI GCNGC 5 cut(s) 540, 621, 875, 941, 1073
Sau3AI GATC 8 cut(s) 211, 459, 716, 777, 853, 998, 1009, 1050
Sau96I GGNCC 3 cut(s) 299, 488, 731
SchI GAGTC 1 cut(s) 768
ScrFI CCNGG 2 cut(s) 467, 549
SduI GDGCHC 4 cut(s) 24, 365, 700, 1145
SfaNI GCATC 4 cut(s) 265, 466, 490, 733
SfcI CTRYAG 3 cut(s) 92, 411, 1070
SinI GGWCC 2 cut(s) 299, 488
SmiMI CAYNNNNRTG 2 cut(s) 273, 882
Sse9I AATT 3 cut(s) 105, 227, 990
SsiI CCGC 5 cut(s) 327, 479, 540, 621, 1045
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 2 cut(s) 465, 547
StyI CCWWGG 5 cut(s) 349, 357, 442, 684, 1040
TaaI ACNGT 2 cut(s) 884, 1033
TaiI ACGT 3 cut(s) 138, 747, 839
TaqI TCGA 2 cut(s) 932, 1008
TaqII GACCGA 1 cut(s) 476
TasI AATT 3 cut(s) 105, 227, 990
TatI WGTACW 1 cut(s) 99
TauI GCSGC 2 cut(s) 542, 623
TfiI GAWTC 3 cut(s) 245, 690, 887
TscAI CASTG 2 cut(s) 853, 906
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 3 cut(s) 874, 940, 1072
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 3 cut(s) 660, 950, 1124
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 2 cut(s) 853, 906
VpaK11BI GGWCC 2 cut(s) 299, 488
XagI CCTNNNNNAGG 2 cut(s) 441, 470
XapI RAATTY 1 cut(s) 990
XceI RCATGY 1 cut(s) 15
XmaJI CCTAGG 1 cut(s) 442
XspI CTAG 1 cut(s) 443
ZraI GACGTC 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.