Rmu_sc0000253.1_g000018

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000253.1
OG0002088
Physical Location & Seq
Forward (+)
63400 .. 65234
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000253.1_g000018.1.cds

Sequence Viewer

Length: 1050 bp
atgcatttctcagataaatcaaaatcaaatcgccacgtgtcctttggtcatgtgcctctccctcaaagtaaatctgctctaccaaacagagaaaagaggtttgtgagaagtgatcttgtagatacaaagaaaactgttgaccctaataggaacgtgaggaagagggctcaggttggtcccttgaataacgatcctaagatgagtgttgggaataaatttaaaagccagcgtgcggatggctcaggtataacctccactaaggatgcgacagacaaaactccatccacagaaagggtgagggaacctctgccttgcctaggaagaaaagagttgatcagcctggcgcaggatgtgattcttagtccagtccatgatgtactaaaatctcctgcttccaaaaggaaaaggattgctgcttctccaggcaagatcgacagcaaactaatccatacaactccaatgtctgtgaactttactggtgcagctatttctagtgccaatttactgaaaagcaaaggggacgggaaacaaaagagagaaggtccatgtgctggaaccaagggattccgtgctccagaggtcttgttcagatctctgcatcaaggccctaagggcgatgtctggtcagctggagttaccctgctttacctgatgatcggaagaactccttttactggagatcctgaacagaatataaaagatatagcaaagttaaagggcagtgaagacttatgggaagtggccaagctacatgaccgtgaatcctcttttccagtggagttattcgatgtcaaatccttgccatcaatgaaactacaaagttggtgcaaggctcacacaaagagatctgagtttttcaatctcattccaagatcgctatttgatcttgtagacaagtgcttgacagtaaatccaaggctgaggatcagcgcagaggaagctctcaatcatgaattctttgccccatgccacgagagcttgaggaagcacaggatgtccaggcggggcagtatgggcgcccagaatgatcttgtacaaagtgtagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 map04110 map04111 map04113
Pfam Domains
Protein Families
Pkinase

Protein Analysis

349

Amino Acids

38.82

Weight (kDa)

9.94

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1016
AccB7I CCANNNNNTGG 1 cut(s) 551
AccI GTMKAC 1 cut(s) 891
AciI CCGC 2 cut(s) 233, 1003
AclWI GGATC 3 cut(s) 185, 674, 932
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 2 cut(s) 215, 953
AcvI CACGTG 1 cut(s) 37
AcyI GRCGYC 1 cut(s) 1017
AfaI GTAC 2 cut(s) 378, 1035
AfiI CCNNNNNNNGG 6 cut(s) 232, 291, 317, 346, 551, 674
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 184, 859
AjnI CCWGG 3 cut(s) 339, 421, 998
AluBI AGCT 5 cut(s) 485, 629, 748, 941, 978
AluI AGCT 5 cut(s) 485, 629, 748, 941, 978
Alw21I GWGCWC 1 cut(s) 574
AlwI GGATC 3 cut(s) 185, 674, 932
AoxI GGCC 2 cut(s) 604, 741
ApeKI GCWGC 2 cut(s) 413, 482
ApoI RAATTY 2 cut(s) 215, 953
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 3 cut(s) 346, 932, 1019
AspS9I GGNCC 3 cut(s) 176, 542, 605
AsuHPI GGTGA 1 cut(s) 307
AvaII GGWCC 2 cut(s) 176, 542
AvrII CCTAGG 1 cut(s) 316
AxyI CCTNAGG 1 cut(s) 609
BalI TGGCCA 1 cut(s) 743
BanI GGYRCC 1 cut(s) 1016
BanII GRGCYC 1 cut(s) 169
BauI CACGAG 1 cut(s) 971
BbrPI CACGTG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 574
BbvCI CCTCAGC 1 cut(s) 920
BbvI GCAGC 2 cut(s) 400, 494
BccI CCATC 3 cut(s) 230, 289, 811
BciT130I CCWGG 3 cut(s) 341, 423, 1000
BclI TGATCA 1 cut(s) 333
BfaI CTAG 2 cut(s) 317, 492
BfoI RGCGCY 1 cut(s) 1020
BglI GCCNNNNNGGC 1 cut(s) 612
BglII AGATCT 2 cut(s) 590, 845
BisI GCNGC 2 cut(s) 414, 483
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 2 cut(s) 415, 484
Bme1390I CCNGG 3 cut(s) 341, 423, 1000
Bme18I GGWCC 2 cut(s) 176, 542
BmgT120I GGNCC 3 cut(s) 176, 542, 605
BmiI GGNNCC 4 cut(s) 178, 303, 556, 1018
BmrFI CCNGG 3 cut(s) 341, 423, 1000
BmsI GCATC 2 cut(s) 253, 607
BpiI GAAGAC 1 cut(s) 732
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpmI CTGGAG 4 cut(s) 405, 558, 651, 696
Bpu10I CCTNAGC 3 cut(s) 168, 241, 920
BpuEI CTTGAG 1 cut(s) 1000
BsaAI YACGTR 1 cut(s) 37
BsaHI GRCGYC 1 cut(s) 1017
BsaJI CCNNGG 3 cut(s) 316, 558, 914
Bsc4I CCNNNNNNNGG 6 cut(s) 232, 291, 317, 346, 551, 674
Bse1I ACTGG 4 cut(s) 365, 481, 679, 773
Bse21I CCTNAGG 1 cut(s) 609
BseBI CCWGG 3 cut(s) 341, 423, 1000
BseDI CCNNGG 3 cut(s) 316, 558, 914
BseGI GGATG 5 cut(s) 241, 268, 281, 355, 999
BseLI CCNNNNNNNGG 6 cut(s) 232, 291, 317, 346, 551, 674
BseMII CTCAG 5 cut(s) 24, 182, 255, 840, 911
BseNI ACTGG 4 cut(s) 365, 481, 679, 773
BseXI GCAGC 2 cut(s) 400, 494
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 2 cut(s) 606, 743
BshNI GGYRCC 1 cut(s) 1016
BsiHKAI GWGCWC 1 cut(s) 574
BslFI GGGAC 2 cut(s) 162, 533
BslI CCNNNNNNNGG 6 cut(s) 232, 291, 317, 346, 551, 674
BsmFI GGGAC 2 cut(s) 162, 533
BsnI GGCC 2 cut(s) 606, 743
Bsp1286I GDGCHC 2 cut(s) 169, 574
Bsp1407I TGTACA 1 cut(s) 1033
BspACI CCGC 2 cut(s) 233, 1003
BspANI GGCC 2 cut(s) 606, 743
BspCNI CTCAG 5 cut(s) 23, 181, 254, 841, 912
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 4 cut(s) 178, 303, 556, 1018
BspPI GGATC 3 cut(s) 185, 674, 932
BspT107I GGYRCC 1 cut(s) 1016
BsrGI TGTACA 1 cut(s) 1033
BsrI ACTGG 4 cut(s) 365, 481, 679, 773
BssECI CCNNGG 3 cut(s) 316, 558, 914
BssNI GRCGYC 1 cut(s) 1017
BssSI CACGAG 1 cut(s) 971
BssT1I CCWWGG 3 cut(s) 316, 558, 914
Bst2BI CACGAG 1 cut(s) 971
Bst2UI CCWGG 3 cut(s) 341, 423, 1000
Bst4CI ACNGT 3 cut(s) 136, 758, 907
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 1017
BstAUI TGTACA 1 cut(s) 1033
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 227, 231
BstDEI CTNAG 9 cut(s) 10, 168, 195, 241, 258, 359, 609, 849, 920
BstENI CCTNNNNNAGG 2 cut(s) 315, 344
BstF5I GGATG 5 cut(s) 241, 268, 281, 355, 999
BstH2I RGCGCY 1 cut(s) 1020
BstHHI GCGC 3 cut(s) 346, 932, 1019
BstMWI GCNNNNNNNGC 4 cut(s) 612, 938, 975, 1014
BstNI CCWGG 3 cut(s) 341, 423, 1000
BstSCI CCNGG 3 cut(s) 339, 421, 998
BstV1I GCAGC 2 cut(s) 400, 494
BstV2I GAAGAC 1 cut(s) 732
BstX2I RGATCY 3 cut(s) 590, 679, 845
BstYI RGATCY 3 cut(s) 590, 679, 845
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 2 cut(s) 606, 743
BtgZI GCGATG 1 cut(s) 630
BtsCI GGATG 5 cut(s) 241, 268, 281, 355, 999
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 2 cut(s) 727, 780
Cac8I GCNNGC 2 cut(s) 227, 231
CciI TCATGA 1 cut(s) 949
CfoI GCGC 3 cut(s) 346, 932, 1019
Cfr13I GGNCC 3 cut(s) 176, 542, 605
Csp6I GTAC 2 cut(s) 377, 1034
CviAII CATG 6 cut(s) 50, 371, 546, 752, 950, 966
CviQI GTAC 2 cut(s) 377, 1034
DdeI CTNAG 9 cut(s) 10, 168, 195, 241, 258, 359, 609, 849, 920
DinI GGCGCC 1 cut(s) 1018
DraI TTTAAA 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 3 cut(s) 316, 558, 914
Eco24I GRGCYC 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 176, 542
Eco72I CACGTG 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 609
EcoNI CCTNNNNNAGG 2 cut(s) 315, 344
EcoO109I RGGNCCY 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 953
EcoRII CCWGG 3 cut(s) 339, 421, 998
EcoT14I CCWWGG 3 cut(s) 316, 558, 914
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 169
EgeI GGCGCC 1 cut(s) 1018
EheI GGCGCC 1 cut(s) 1018
ErhI CCWWGG 3 cut(s) 316, 558, 914
FaeI CATG 6 cut(s) 53, 374, 549, 755, 953, 969
FalI AAGNNNNNCTT 2 cut(s) 652, 684
FaqI GGGAC 2 cut(s) 162, 533
FatI CATG 6 cut(s) 49, 370, 545, 751, 949, 965
FauI CCCGC 1 cut(s) 996
FbaI TGATCA 1 cut(s) 333
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 2 cut(s) 414, 483
FokI GGATG 5 cut(s) 248, 268, 275, 362, 1006
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 2 cut(s) 414, 483
FspBI CTAG 2 cut(s) 317, 492
GlaI GCGC 3 cut(s) 345, 931, 1018
GluI GCNGC 2 cut(s) 414, 483
GsuI CTGGAG 4 cut(s) 405, 558, 651, 696
HaeII RGCGCY 1 cut(s) 1020
HaeIII GGCC 2 cut(s) 606, 743
HhaI GCGC 3 cut(s) 346, 932, 1019
Hin1I GRCGYC 1 cut(s) 1017
Hin1II CATG 6 cut(s) 53, 374, 549, 755, 953, 969
Hin6I GCGC 3 cut(s) 344, 930, 1017
HinP1I GCGC 3 cut(s) 344, 930, 1017
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 3 cut(s) 355, 564, 761
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 3 cut(s) 139, 469, 892
Hpy188I TCNGA 4 cut(s) 13, 590, 659, 850
Hpy188III TCNNGA 3 cut(s) 575, 683, 950
Hpy8I GTNNAC 3 cut(s) 139, 469, 892
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 3 cut(s) 136, 758, 907
HpyCH4IV ACGT 2 cut(s) 36, 153
HpyCH4V TGCA 4 cut(s) 4, 482, 598, 828
HpyF10VI GCNNNNNNNGC 4 cut(s) 612, 938, 975, 1014
HpyF3I CTNAG 9 cut(s) 10, 168, 195, 241, 258, 359, 609, 849, 920
HpySE526I ACGT 2 cut(s) 36, 153
Hsp92I GRCGYC 1 cut(s) 1017
Hsp92II CATG 6 cut(s) 53, 374, 549, 755, 953, 969
HspAI GCGC 3 cut(s) 344, 930, 1017
KasI GGCGCC 1 cut(s) 1016
Ksp22I TGATCA 1 cut(s) 333
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 2 cut(s) 400, 494
LweI GCATC 2 cut(s) 253, 607
MaeI CTAG 2 cut(s) 317, 492
MaeII ACGT 2 cut(s) 36, 153
MaeIII GTNAC 1 cut(s) 634
MboII GAAGA 4 cut(s) 172, 333, 672, 737
MflI RGATCY 3 cut(s) 590, 679, 845
MhlI GDGCHC 2 cut(s) 169, 574
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 3 cut(s) 215, 499, 953
MluNI TGGCCA 1 cut(s) 743
Mly113I GGCGCC 1 cut(s) 1017
Mox20I TGGCCA 1 cut(s) 743
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 743
MseI TTAA 2 cut(s) 219, 713
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 743
MspA1I CMGCKG 1 cut(s) 629
MspR9I CCNGG 3 cut(s) 341, 423, 1000
MvaI CCWGG 3 cut(s) 341, 423, 1000
MwoI GCNNNNNNNGC 4 cut(s) 612, 938, 975, 1014
NarI GGCGCC 1 cut(s) 1017
NlaIII CATG 6 cut(s) 53, 374, 549, 755, 953, 969
NlaIV GGNNCC 4 cut(s) 178, 303, 556, 1018
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 949
PfeI GAWTC 3 cut(s) 355, 564, 761
PflMI CCANNNNNTGG 1 cut(s) 551
PkrI GCNGC 2 cut(s) 415, 484
PluTI GGCGCC 1 cut(s) 1020
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 37
Psp6I CCWGG 3 cut(s) 339, 421, 998
PspCI CACGTG 1 cut(s) 37
PspGI CCWGG 3 cut(s) 339, 421, 998
PspN4I GGNNCC 4 cut(s) 178, 303, 556, 1018
PspPI GGNCC 3 cut(s) 176, 542, 605
PsrI GAACNNNNNNTAC 2 cut(s) 655, 687
PsuI RGATCY 3 cut(s) 590, 679, 845
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 2 cut(s) 378, 1035
RsaNI GTAC 2 cut(s) 377, 1034
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 2 cut(s) 219, 713
SatI GCNGC 2 cut(s) 414, 483
Sau96I GGNCC 3 cut(s) 176, 542, 605
ScrFI CCNGG 3 cut(s) 341, 423, 1000
SduI GDGCHC 2 cut(s) 169, 574
SfaNI GCATC 2 cut(s) 253, 607
SfoI GGCGCC 1 cut(s) 1018
SinI GGWCC 2 cut(s) 176, 542
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 979
SmoI CTYRAG 1 cut(s) 979
Sse9I AATT 3 cut(s) 215, 499, 953
SsiI CCGC 2 cut(s) 233, 1003
SspDI GGCGCC 1 cut(s) 1016
SspMI CTAG 2 cut(s) 317, 492
StyD4I CCNGG 3 cut(s) 339, 421, 998
StyI CCWWGG 3 cut(s) 316, 558, 914
TaaI ACNGT 3 cut(s) 136, 758, 907
TaiI ACGT 2 cut(s) 39, 156
TaqI TCGA 2 cut(s) 432, 786
TasI AATT 3 cut(s) 215, 499, 953
TatI WGTACW 2 cut(s) 376, 1033
TfiI GAWTC 3 cut(s) 355, 564, 761
Tru1I TTAA 2 cut(s) 219, 713
Tru9I TTAA 2 cut(s) 219, 713
TscAI CASTG 2 cut(s) 727, 780
TseI GCWGC 2 cut(s) 413, 482
TspDTI ATGAA 2 cut(s) 824, 966
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 2 cut(s) 727, 780
Van91I CCANNNNNTGG 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 176, 542
XagI CCTNNNNNAGG 2 cut(s) 315, 344
XapI RAATTY 2 cut(s) 215, 953
XcmI CCANNNNNNNNNTGG 2 cut(s) 41, 233
XmaJI CCTAGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 891
XspI CTAG 2 cut(s) 317, 492
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.