Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002088

Physical Location & Seq

Genomic Coordinates Reverse (-)

28419265 .. 28422511

Gene Structure 3247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCTGGTCAGCTGGAGTTACCCCTGCTTTACCTGATGATAGGAAGAACTCCTTTTACTGGAGATCCTGAACAGAATATAAAAGATATTGCAAAGTTAAAGGGCAGTGAAGACTTATGGGAAGTGGCCAAGCTACATGACCGTGAATCCTCTTTTCCAGTGGAGTTATTCGATGTCAAATCCTTGCCATCAATGAAACTACAAGGTTGGTGCAAGGCTCACACAAAGAGATCTGAGTTTTTCAATCTCATTCCAAGATCGCTATTTGATCTTGTAGACAAGTGCTTGACAGTAAATCCAAGGCTGAGGATCAGTGCAGAGGAAGCTCTCAATCATGAATTCTTTGCCCCATGCCACGAGAGCTTGAGGAAGCACAGGATGTCCAGGCGGGGCAGTATGGGCGCCCAGAATGATCTTGTACAAAGTCTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

Pkinase

Protein Analysis

144

Amino Acids

16.54

Weight (kDa)

6.97

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 115	3.4e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16970
fragaria_vesca	FvH4_5g20210 FvH4_5g20210 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370
malus_domestica	MD04G1051700.v1.1 MD06G1048400.v1.1 MD07G1109800.v1.1
prunus_persica	Prupe.5G058600_v2.0.a1 Prupe.5G058600_v2.0.a1
pyrus_communis	pycom04g04540 pycom06g04150 pycom07g09450 pycom07g09460
rosa_chinensis	RchiOBHm_Chr1g0348071 RchiOBHm_Chr7g0205281
rosa_laevigata	RLG00000003391 RLG00000028693
rosa_multiflora	Rmu_co8277205.1_g000001 Rmu_sc0000253.1_g000018 Rmu_sc0001072.1_g000017 Rmu_sc0002523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252510 Rroxscaffold_4G00307260 Rroxscaffold_4G00307270
rosa_rugosa	Rorug01G0192000 Rorug01G0192100 Rorug07G0089300 Rorug07G0089400.1
rosa_samantha	Rh1AG209800 Rh1BG175400 Rh1CG194200 Rh1DG205200 Rh7AG219800 Rh7BG215900 Rh7CG232700 Rh7DG226800
rosa_wichuraiana	Rw1G017500 Rw7G019010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	2 cut(s)	59, 317
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	4 cut(s)	13, 133, 326, 363
AluI	AGCT	4 cut(s)	13, 133, 326, 363
AlwI	GGATC	2 cut(s)	59, 317
AoxI	GGCC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	385
BfaI	CTAG	1 cut(s)	428
BfoI	RGCGCY	1 cut(s)	405
BglII	AGATCT	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	2 cut(s)	35, 81
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	64, 158
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	225, 296
BseNI	ACTGG	2 cut(s)	64, 158
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	6 cut(s)	64, 230, 257, 268, 309, 412
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	226, 297
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	59, 317
BspT107I	GGYRCC	1 cut(s)	401
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	64, 158
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	6 cut(s)	64, 230, 257, 268, 309, 412
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	143, 292
BstACI	GRCGYC	1 cut(s)	402
BstAUI	TGTACA	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	234, 305
BstF5I	GGATG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	6 cut(s)	67, 233, 260, 271, 312, 415
BstMBI	GATC	6 cut(s)	64, 230, 257, 268, 309, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 360, 399
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	2 cut(s)	64, 230
BstYI	RGATCY	2 cut(s)	64, 230
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	3 cut(s)	112, 165, 319
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	3 cut(s)	137, 335, 351
CviJI	RGCY	7 cut(s)	13, 128, 133, 218, 304, 326, 363
CviKI_1	RGCY	7 cut(s)	13, 128, 133, 218, 304, 326, 363
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	2 cut(s)	234, 305
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	6 cut(s)	66, 232, 259, 270, 311, 414
DpnII	GATC	6 cut(s)	64, 230, 257, 268, 309, 412
EaeI	YGGCCR	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	299
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	3 cut(s)	140, 338, 354
FaiI	YATR	6 cut(s)	80, 118, 138, 336, 352, 398
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FatI	CATG	3 cut(s)	136, 334, 350
FauI	CCCGC	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	276
FokI	GGATG	1 cut(s)	391
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	403
GsuI	CTGGAG	2 cut(s)	35, 81
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	3 cut(s)	140, 338, 354
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	3 cut(s)	68, 335, 428
Hpy8I	GTNNAC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	143, 292
HpyCH4V	TGCA	3 cut(s)	92, 213, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 360, 399
HpyF3I	CTNAG	2 cut(s)	234, 305
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	140, 338, 354
HspAI	GCGC	1 cut(s)	402
KasI	GGCGCC	1 cut(s)	401
Kzo9I	GATC	6 cut(s)	64, 230, 257, 268, 309, 412
LpnPI	CCDG	9 cut(s)	38, 45, 47, 81, 171, 361, 370, 397, 419
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	6 cut(s)	66, 232, 259, 270, 311, 414
MboI	GATC	6 cut(s)	64, 230, 257, 268, 309, 412
MboII	GAAGA	2 cut(s)	57, 122
MflI	RGATCY	2 cut(s)	64, 230
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	402
MnlI	CCTC	4 cut(s)	160, 300, 313, 360
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	3 cut(s)	323, 360, 399
NarI	GGCGCC	1 cut(s)	402
NdeII	GATC	6 cut(s)	64, 230, 257, 268, 309, 412
NlaIII	CATG	3 cut(s)	140, 338, 354
NlaIV	GGNNCC	1 cut(s)	403
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	146
PluTI	GGCGCC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	403
PsrI	GAACNNNNNNTAC	2 cut(s)	40, 72
PsuI	RGATCY	2 cut(s)	64, 230
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	98
Sau3AI	GATC	6 cut(s)	64, 230, 257, 268, 309, 412
ScrFI	CCNGG	1 cut(s)	385
SetI	ASST	6 cut(s)	15, 36, 135, 208, 328, 365
SfoI	GGCGCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	1 cut(s)	388
SspDI	GGCGCC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	143, 292
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	338
TatI	WGTACW	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	3 cut(s)	112, 165, 319
TspDTI	ATGAA	2 cut(s)	209, 351
TspRI	CASTG	3 cut(s)	112, 165, 319
XapI	RAATTY	1 cut(s)	338
XbaI	TCTAGA	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.