Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002523.1

Orthogroup ID

OG0002088

Physical Location & Seq

Genomic Coordinates Reverse (-)

6046 .. 11528

Gene Structure 5483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002523.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

atgcccaatcccccagtctcagatcaccgccgccacagaagcacatcggagacggagaaagcatggcacctattatcaattctattcactctccgccgccccgctactccggaagagctggcatcgcggtgccggttgttaaacgccacggcggagttggtcctgagcctctgctcgatccctaattctccgatttgtttgaccgaggaggaggacggactggtcactgtggctatggcaacggtttcggctttggaagagtttgcgccggagtcgaggatggttatggagttgtacgtgttgcggtgtttttatccgaacgccgagttcaggaagaagagaaaggggccggatttggacaatgaggcggtgccgatggcgaaaaggagattgcggtttcggaatgaggatgcaggtgaagaagatggagtgttagcttttcaccacaattggattgagggaaattcaaataatgagagagctttgggccctttacttcttgacttcaatgctgagctttcgagtcttcaaatgacactttttgaacatgaggaagaaggtgatggtgttgtttggccgagtgcttttatgcgtgaggagagccctggatctttagatgcatacaatgcagtcaataatctgctgaaaactgaagcagatatatgcaatgtgcagccaattcaagttgttagaggtgaggggtgcgtctttgatttgaatttacctccaccaagttcaaatagggatgccttggccggaaacgagagattagagcatgagaaagattttagtggcacatttttcttacatgaagcagaaagcaatattggtgctggcattcatgacactcattcttgcaaagcttcaatggatcaatcaaaagacgatgcagaacctctagtcgaaggtactgtgaacgaaggttttgatgaagtaagagcagaaggagatggtgaacagtttgttttctcagagaaggttgacgcatttggtgaagcacccacacattgcttggactctgaaaatacaaagaatgttatagccttggataaagaccagagtatgaaaaaggcagagacaaagactgacttcctatcagctgaatgtccttctcctgagaagctgcttgcaaactcttccggaaaattgaagggcatgtacacaaattttccttcacaagaacgatttcttgtggattcgttagaagataatgaagttgttaacactcccaaacagcagaatcaatgtaaaagtggtcagagatctctctctgtagaacataaattgaagaaaaacaacacaaatagcatgcatccaaaagaaaacatggtggatactacctctatatctcctaagttggagaaaataaaactacctcgctttgaggattttataatagaggaagaagaaggttcaggtggttatggaactgtttacagggctcagaggaagaatgacgggaaaaggtttgccataaaatgtccccatgttaaagctcataaacaacatgttgataatgagcggaaaatgcttgagcgttttgggggtaggaacttcattataaagtacgaaggtgctttcagaagtggcgacagtgagtgctttattttggaacatgttgaacatgacagacctgaggtcttgaagaaaaagattgatctatttgagctccagtggtatggctattgcatgtttagagccctagcatgcttgcataagcagggtgtggtgcacagagatgttaagcctggaaacttcctcttctctcagaagctaagcaaaggttacctgattgatttcaaccttgccatggatttacagcagaagtatgcaattagaaataaatcaaaatcaaatcgccacgtgtcctttggtcatgtgcctctccctcaaagtaaatctgctctaccaaacagagaaaagaggtttgtgagaagtgatcttgtagatacaaagaaaactgttgaccctaataggaacgtgaggaagagggctcaggttggtcccttgaataacgatcctaagatgagtgttgggaataaatttaaaagccagcgtgcggatggctcaggtataacctccactaaggatgcgacagacaaaactccatccacagaaagggtgagggaacctctgccttgcctaggaagaaaagagttgatcagcctggcgcaggatgtgattcttagtccagtccatgatgtactaaaatctcctgcttccaaaaggaaaaggattgctgcttctccaggcaagatcgacagcaaactaatccatacaactccaatgtctgtgaactttactggtgcagctatttctagtgccaatttactgaaaagcaaaggggacgggaaacaaaagagagaaggtccatgtgctggaaccaagggattccgtgctccagaggtcttgttcagatctctgcatcaaggccctaagggcgatgtctggtcagctggagttaccctgctttacctgatgatcggaagaactccttttactggagatcctgaacagaatataaaagatatagcaaagttaaagggcagtgaagacttatgggaagtggccaagctacatgaccgtgaatcctcttttccagtggagttattcgatgtcaaatccttgccatcaatgaaactacaaagttggtgcaaggctcacacaaagagatctgagtttttcaatctcattccaagatcgctatttgatcttgtagacaagtgcttgacagtaaatccaaggctgaggatcagcgcagaggaagctctcaatcatgaattctttgccccatgccacgagagcttgaggaagcacaggatgtccaggcggggcagtatgggcgcccagaatgatcttgtacaaagtctagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

Pkinase

Protein Analysis

958

Amino Acids

107.65

Weight (kDa)

7.36

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16970
fragaria_vesca	FvH4_5g20210 FvH4_5g20210 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370
malus_domestica	MD04G1051700.v1.1 MD06G1048400.v1.1 MD07G1109800.v1.1
prunus_persica	Prupe.5G058600_v2.0.a1 Prupe.5G058600_v2.0.a1
pyrus_communis	pycom04g04540 pycom06g04150 pycom07g09450 pycom07g09460
rosa_chinensis	RchiOBHm_Chr1g0348071 RchiOBHm_Chr7g0205281
rosa_laevigata	RLG00000003391 RLG00000028693
rosa_multiflora	Rmu_co8277205.1_g000001 Rmu_sc0000253.1_g000018 Rmu_sc0001072.1_g000017 Rmu_sc0002523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252510 Rroxscaffold_4G00307260 Rroxscaffold_4G00307270
rosa_rugosa	Rorug01G0192000 Rorug01G0192100 Rorug07G0089300 Rorug07G0089400.1
rosa_samantha	Rh1AG209800 Rh1BG175400 Rh1CG194200 Rh1DG205200 Rh7AG219800 Rh7BG215900 Rh7CG232700 Rh7DG226800
rosa_wichuraiana	Rw1G017500 Rw7G019010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1394, 1562
AarI	CACCTGC	1 cut(s)	404
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	404
AccB1I	GGYRCC	4 cut(s)	66, 129, 370, 2843
AccB7I	CCANNNNNTGG	1 cut(s)	2378
AccBSI	CCGCTC	1 cut(s)	1522
AccI	GTMKAC	1 cut(s)	2718
AccII	CGCG	1 cut(s)	127
AccIII	TCCGGA	2 cut(s)	109, 1139
AclWI	GGATC	6 cut(s)	172, 616, 879, 2012, 2501, 2759
AcoI	YGGCCR	3 cut(s)	575, 753, 2568
AcsI	RAATTY	5 cut(s)	463, 718, 1165, 2042, 2780
AcuI	CTGAAG	1 cut(s)	672
AcvI	CACGTG	1 cut(s)	1864
AcyI	GRCGYC	1 cut(s)	2844
AfaI	GTAC	6 cut(s)	296, 910, 1160, 1568, 2205, 2862
AfiI	CCNNNNNNNGG	8 cut(s)	330, 1810, 2059, 2118, 2144, 2173, 2378, 2501
AflIII	ACRYGT	4 cut(s)	297, 1507, 1615, 1863
AhdI	GACNNNNNGTC	1 cut(s)	1637
AjnI	CCWGG	5 cut(s)	604, 1747, 2166, 2248, 2825
AjuI	GAANNNNNNNTTGG	2 cut(s)	810, 842
Alw21I	GWGCWC	3 cut(s)	1671, 1734, 2401
Alw26I	GTCTC	3 cut(s)	22, 44, 1070
Alw44I	GTGCAC	1 cut(s)	1730
AlwI	GGATC	6 cut(s)	172, 616, 879, 2012, 2501, 2759
Aor13HI	TCCGGA	2 cut(s)	109, 1139
AoxI	GGCC	6 cut(s)	347, 487, 575, 753, 2431, 2568
ApaI	GGGCCC	1 cut(s)	491
ApaLI	GTGCAC	1 cut(s)	1730
ApeKI	GCWGC	4 cut(s)	673, 1123, 2240, 2309
ApoI	RAATTY	5 cut(s)	463, 718, 1165, 2042, 2780
Asp700I	GAANNNNTTC	1 cut(s)	1185
AspA2I	CCTAGG	1 cut(s)	2143
AspLEI	GCGC	4 cut(s)	268, 2173, 2759, 2846
AspS9I	GGNCC	7 cut(s)	160, 347, 487, 488, 2003, 2369, 2432
AsuHPI	GGTGA	8 cut(s)	17, 428, 434, 572, 707, 965, 1004, 2134
AvaII	GGWCC	3 cut(s)	160, 2003, 2369
AvrII	CCTAGG	1 cut(s)	2143
AxyI	CCTNAGG	2 cut(s)	1635, 2436
BaeGI	GKGCMC	2 cut(s)	491, 1734
BalI	TGGCCA	1 cut(s)	2570
BanI	GGYRCC	4 cut(s)	66, 129, 370, 2843
BanII	GRGCYC	6 cut(s)	491, 605, 1444, 1671, 1702, 1996
BarI	GAAGNNNNNNTAC	2 cut(s)	1142, 1174
BauI	CACGAG	1 cut(s)	2798
BbrPI	CACGTG	1 cut(s)	1864
BbsI	GAAGAC	2 cut(s)	518, 2559
Bbv12I	GWGCWC	3 cut(s)	1671, 1734, 2401
BbvCI	CCTCAGC	1 cut(s)	2747
BbvI	GCAGC	4 cut(s)	685, 1110, 2227, 2321
BccI	CCATC	8 cut(s)	274, 370, 419, 557, 944, 2057, 2116, 2638
BceAI	ACGGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BciT130I	CCWGG	5 cut(s)	606, 1749, 2168, 2250, 2827
BciVI	GTATCC	1 cut(s)	1327
BclI	TGATCA	1 cut(s)	2160
BcoDI	GTCTC	3 cut(s)	22, 44, 1070
BfaI	CTAG	5 cut(s)	899, 1703, 2144, 2319, 2870
BfmI	CTRYAG	1 cut(s)	1272
BfoI	RGCGCY	1 cut(s)	2847
BfuAI	ACCTGC	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	1327
BglI	GCCNNNNNGGC	1 cut(s)	2439
BglII	AGATCT	3 cut(s)	1262, 2417, 2672
BisI	GCNGC	6 cut(s)	31, 97, 674, 1124, 2241, 2310
BlnI	CCTAGG	1 cut(s)	2143
BlpI	GCTNAGC	2 cut(s)	513, 1775
BlsI	GCNGC	6 cut(s)	32, 98, 675, 1125, 2242, 2311
Bme1390I	CCNGG	5 cut(s)	606, 1749, 2168, 2250, 2827
Bme18I	GGWCC	3 cut(s)	160, 2003, 2369
BmeRI	GACNNNNNGTC	1 cut(s)	1637
BmgT120I	GGNCC	7 cut(s)	160, 347, 487, 488, 2003, 2369, 2432
BmiI	GGNNCC	9 cut(s)	68, 131, 348, 372, 489, 2005, 2130, 2383, 2845
BmrFI	CCNGG	5 cut(s)	606, 1749, 2168, 2250, 2827
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	8 cut(s)	131, 400, 607, 736, 877, 1321, 2080, 2434
BmuI	ACTGGG	1 cut(s)	8
BpiI	GAAGAC	2 cut(s)	518, 2559
BplI	GAGNNNNNCTC	2 cut(s)	2116, 2148
BpmI	CTGGAG	5 cut(s)	1655, 2232, 2385, 2478, 2523
Bpu10I	CCTNAGC	4 cut(s)	164, 1995, 2068, 2747
Bpu1102I	GCTNAGC	2 cut(s)	513, 1775
BpuEI	CTTGAG	2 cut(s)	1553, 2827
BsaAI	YACGTR	2 cut(s)	298, 1864
BsaHI	GRCGYC	1 cut(s)	2844
BsaJI	CCNNGG	9 cut(s)	147, 204, 604, 750, 1044, 1809, 2143, 2385, 2741
BsaWI	WCCGGW	2 cut(s)	109, 1139
Bsc4I	CCNNNNNNNGG	8 cut(s)	330, 1810, 2059, 2118, 2144, 2173, 2378, 2501
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	7 cut(s)	14, 225, 1672, 2192, 2308, 2506, 2600
Bse21I	CCTNAGG	2 cut(s)	1635, 2436
Bse3DI	GCAATG	2 cut(s)	673, 1006
BseAI	TCCGGA	2 cut(s)	109, 1139
BseBI	CCWGG	5 cut(s)	606, 1749, 2168, 2250, 2827
BseDI	CCNNGG	9 cut(s)	147, 204, 604, 750, 1044, 1809, 2143, 2385, 2741
BseGI	GGATG	9 cut(s)	285, 415, 751, 1312, 2068, 2095, 2108, 2182, 2826
BseLI	CCNNNNNNNGG	8 cut(s)	330, 1810, 2059, 2118, 2144, 2173, 2378, 2501
BseMI	GCAATG	2 cut(s)	673, 1006
BseNI	ACTGG	7 cut(s)	14, 225, 1672, 2192, 2308, 2506, 2600
BseRI	GAGGAG	3 cut(s)	221, 224, 611
BseSI	GKGCMC	2 cut(s)	491, 1734
BseXI	GCAGC	4 cut(s)	685, 1110, 2227, 2321
BsgI	GTGCAG	2 cut(s)	692, 2328
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	6 cut(s)	349, 489, 577, 755, 2433, 2570
BshNI	GGYRCC	4 cut(s)	66, 129, 370, 2843
BsiHKAI	GWGCWC	3 cut(s)	1671, 1734, 2401
BsiSI	CCGG	6 cut(s)	110, 133, 269, 350, 756, 1140
BslFI	GGGAC	3 cut(s)	1467, 1989, 2360
BslI	CCNNNNNNNGG	8 cut(s)	330, 1810, 2059, 2118, 2144, 2173, 2378, 2501
BsmAI	GTCTC	3 cut(s)	22, 44, 1070
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	3 cut(s)	1467, 1989, 2360
BsmI	GAATGC	1 cut(s)	837
BsnI	GGCC	6 cut(s)	349, 489, 577, 755, 2433, 2570
Bsp120I	GGGCCC	1 cut(s)	487
Bsp1286I	GDGCHC	8 cut(s)	491, 605, 1444, 1671, 1702, 1734, 1996, 2401
Bsp13I	TCCGGA	2 cut(s)	109, 1139
Bsp1407I	TGTACA	2 cut(s)	1158, 2860
Bsp1720I	GCTNAGC	2 cut(s)	513, 1775
Bsp19I	CCATGG	1 cut(s)	1809
BspANI	GGCC	6 cut(s)	349, 489, 577, 755, 2433, 2570
BspEI	TCCGGA	2 cut(s)	109, 1139
BspFNI	CGCG	1 cut(s)	127
BspHI	TCATGA	2 cut(s)	841, 2776
BspLI	GGNNCC	9 cut(s)	68, 131, 348, 372, 489, 2005, 2130, 2383, 2845
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	6 cut(s)	172, 616, 879, 2012, 2501, 2759
BspQI	GCTCTTC	1 cut(s)	108
BspT107I	GGYRCC	4 cut(s)	66, 129, 370, 2843
BsrBI	CCGCTC	1 cut(s)	1522
BsrDI	GCAATG	2 cut(s)	673, 1006
BsrFI	RCCGGY	1 cut(s)	132
BsrGI	TGTACA	2 cut(s)	1158, 2860
BsrI	ACTGG	7 cut(s)	14, 225, 1672, 2192, 2308, 2506, 2600
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	9 cut(s)	147, 204, 604, 750, 1044, 1809, 2143, 2385, 2741
BssNI	GRCGYC	1 cut(s)	2844
BssSI	CACGAG	1 cut(s)	2798
BssT1I	CCWWGG	6 cut(s)	750, 1044, 1809, 2143, 2385, 2741
Bst2BI	CACGAG	1 cut(s)	2798
Bst2UI	CCWGG	5 cut(s)	606, 1749, 2168, 2250, 2827
Bst4CI	ACNGT	9 cut(s)	229, 244, 913, 960, 1432, 1595, 1963, 2585, 2734
Bst6I	CTCTTC	6 cut(s)	108, 252, 332, 1141, 1766, 1982
BstACI	GRCGYC	1 cut(s)	2844
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstAUI	TGTACA	2 cut(s)	1158, 2860
BstBAI	YACGTR	2 cut(s)	298, 1864
BstC8I	GCNNGC	8 cut(s)	120, 835, 1128, 1310, 1708, 1712, 2054, 2058
BstDSI	CCRYGG	2 cut(s)	147, 1809
BstEII	GGTNACC	1 cut(s)	1784
BstENI	CCTNNNNNAGG	2 cut(s)	2142, 2171
BstF5I	GGATG	9 cut(s)	285, 415, 751, 1312, 2068, 2095, 2108, 2182, 2826
BstFNI	CGCG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	2847
BstHHI	GCGC	4 cut(s)	268, 2173, 2759, 2846
BstMAI	GTCTC	3 cut(s)	22, 44, 1070
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 124, 626, 1528, 2439, 2765, 2802, 2841
BstNI	CCWGG	5 cut(s)	606, 1749, 2168, 2250, 2827
BstNSI	RCATGY	6 cut(s)	1159, 1312, 1511, 1619, 1693, 1710
BstPI	GGTNACC	1 cut(s)	1784
BstSCI	CCNGG	5 cut(s)	604, 1747, 2166, 2248, 2825
BstSFI	CTRYAG	1 cut(s)	1272
BstSLI	GKGCMC	2 cut(s)	491, 1734
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	4 cut(s)	685, 1110, 2227, 2321
BstV2I	GAAGAC	2 cut(s)	518, 2559
BstX2I	RGATCY	5 cut(s)	608, 1262, 2417, 2506, 2672
BstXI	CCANNNNNNTGG	1 cut(s)	1679
BstYI	RGATCY	5 cut(s)	608, 1262, 2417, 2506, 2672
Bsu36I	CCTNAGG	2 cut(s)	1635, 2436
BsuI	GTATCC	1 cut(s)	1327
BsuRI	GGCC	6 cut(s)	349, 489, 577, 755, 2433, 2570
BtgI	CCRYGG	2 cut(s)	147, 1809
BtgZI	GCGATG	2 cut(s)	108, 2457
BtsCI	GGATG	9 cut(s)	285, 415, 751, 1312, 2068, 2095, 2108, 2182, 2826
BtsI	GCAGTG	1 cut(s)	2554
BtsIMutI	CAGTG	5 cut(s)	225, 1600, 1679, 2554, 2607
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	8 cut(s)	120, 835, 1128, 1310, 1708, 1712, 2054, 2058
CciI	TCATGA	2 cut(s)	841, 2776
CfoI	GCGC	4 cut(s)	268, 2173, 2759, 2846
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	7 cut(s)	160, 347, 487, 488, 2003, 2369, 2432
CseI	GACGC	2 cut(s)	694, 992
Csp6I	GTAC	6 cut(s)	295, 909, 1159, 1567, 2204, 2861
CviQI	GTAC	6 cut(s)	295, 909, 1159, 1567, 2204, 2861
DinI	GGCGCC	1 cut(s)	2845
DraI	TTTAAA	1 cut(s)	2047
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	1637
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	3 cut(s)	575, 753, 2568
Eam1104I	CTCTTC	6 cut(s)	108, 252, 332, 1141, 1766, 1982
Eam1105I	GACNNNNNGTC	1 cut(s)	1637
EarI	CTCTTC	6 cut(s)	108, 252, 332, 1141, 1766, 1982
EciI	GGCGGA	2 cut(s)	83, 167
Ecl136II	GAGCTC	1 cut(s)	1669
Eco130I	CCWWGG	6 cut(s)	750, 1044, 1809, 2143, 2385, 2741
Eco24I	GRGCYC	6 cut(s)	491, 605, 1444, 1671, 1702, 1996
Eco47I	GGWCC	3 cut(s)	160, 2003, 2369
Eco53kI	GAGCTC	1 cut(s)	1669
Eco57I	CTGAAG	1 cut(s)	672
Eco72I	CACGTG	1 cut(s)	1864
Eco81I	CCTNAGG	2 cut(s)	1635, 2436
Eco91I	GGTNACC	1 cut(s)	1784
EcoICRI	GAGCTC	1 cut(s)	1669
EcoNI	CCTNNNNNAGG	2 cut(s)	2142, 2171
EcoO109I	RGGNCCY	2 cut(s)	488, 2432
EcoO65I	GGTNACC	1 cut(s)	1784
EcoRI	GAATTC	1 cut(s)	2780
EcoRII	CCWGG	5 cut(s)	604, 1747, 2166, 2248, 2825
EcoT14I	CCWWGG	6 cut(s)	750, 1044, 1809, 2143, 2385, 2741
EcoT22I	ATGCAT	2 cut(s)	622, 1314
EcoT38I	GRGCYC	6 cut(s)	491, 605, 1444, 1671, 1702, 1996
EgeI	GGCGCC	1 cut(s)	2845
EheI	GGCGCC	1 cut(s)	2845
ErhI	CCWWGG	6 cut(s)	750, 1044, 1809, 2143, 2385, 2741
Esp3I	CGTCTC	1 cut(s)	44
FalI	AAGNNNNNCTT	4 cut(s)	1073, 1105, 2479, 2511
FaqI	GGGAC	3 cut(s)	1467, 1989, 2360
FauI	CCCGC	2 cut(s)	109, 2823
FbaI	TGATCA	1 cut(s)	2160
FblI	GTMKAC	1 cut(s)	2718
Fnu4HI	GCNGC	6 cut(s)	31, 97, 674, 1124, 2241, 2310
FokI	GGATG	9 cut(s)	292, 422, 758, 1299, 2075, 2095, 2102, 2189, 2833
FriOI	GRGCYC	6 cut(s)	491, 605, 1444, 1671, 1702, 1996
Fsp4HI	GCNGC	6 cut(s)	31, 97, 674, 1124, 2241, 2310
FspBI	CTAG	5 cut(s)	899, 1703, 2144, 2319, 2870
GlaI	GCGC	4 cut(s)	267, 2172, 2758, 2845
GluI	GCNGC	6 cut(s)	31, 97, 674, 1124, 2241, 2310
GsuI	CTGGAG	5 cut(s)	1655, 2232, 2385, 2478, 2523
HaeII	RGCGCY	1 cut(s)	2847
HaeIII	GGCC	6 cut(s)	349, 489, 577, 755, 2433, 2570
HapII	CCGG	6 cut(s)	110, 133, 269, 350, 756, 1140
HgaI	GACGC	2 cut(s)	694, 992
HhaI	GCGC	4 cut(s)	268, 2173, 2759, 2846
Hin1I	GRCGYC	1 cut(s)	2844
Hin6I	GCGC	4 cut(s)	266, 2171, 2757, 2844
HinP1I	GCGC	4 cut(s)	266, 2171, 2757, 2844
HincII	GTYRAC	3 cut(s)	982, 1222, 1966
HindII	GTYRAC	3 cut(s)	982, 1222, 1966
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	8 cut(s)	272, 523, 1016, 1196, 1240, 2182, 2391, 2588
HpaI	GTTAAC	1 cut(s)	1222
HpaII	CCGG	6 cut(s)	110, 133, 269, 350, 756, 1140
HphI	GGTGA	8 cut(s)	17, 428, 434, 572, 707, 965, 1004, 2134
HpyCH4III	ACNGT	9 cut(s)	229, 244, 913, 960, 1432, 1595, 1963, 2585, 2734
HpyCH4IV	ACGT	3 cut(s)	297, 1863, 1980
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 124, 626, 1528, 2439, 2765, 2802, 2841
HpySE526I	ACGT	3 cut(s)	297, 1863, 1980
Hsp92I	GRCGYC	1 cut(s)	2844
HspAI	GCGC	4 cut(s)	266, 2171, 2757, 2844
KasI	GGCGCC	1 cut(s)	2843
Kpn2I	TCCGGA	2 cut(s)	109, 1139
Ksp22I	TGATCA	1 cut(s)	2160
KspAI	GTTAAC	1 cut(s)	1222
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	1674, 2404
Lsp1109I	GCAGC	4 cut(s)	685, 1110, 2227, 2321
LweI	GCATC	8 cut(s)	131, 400, 607, 736, 877, 1321, 2080, 2434
MaeI	CTAG	5 cut(s)	899, 1703, 2144, 2319, 2870
MaeII	ACGT	3 cut(s)	297, 1863, 1980
MaeIII	GTNAC	3 cut(s)	223, 1784, 2461
MbiI	CCGCTC	1 cut(s)	1522
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	5 cut(s)	608, 1262, 2417, 2506, 2672
MhlI	GDGCHC	8 cut(s)	491, 605, 1444, 1671, 1702, 1734, 1996, 2401
MlsI	TGGCCA	1 cut(s)	2570
MluNI	TGGCCA	1 cut(s)	2570
Mly113I	GGCGCC	1 cut(s)	2844
MlyI	GAGTC	3 cut(s)	281, 532, 1010
MmeI	TCCRAC	1 cut(s)	1338
Mox20I	TGGCCA	1 cut(s)	2570
Mph1103I	ATGCAT	2 cut(s)	622, 1314
MroI	TCCGGA	2 cut(s)	109, 1139
MroXI	GAANNNNTTC	1 cut(s)	1185
MscI	TGGCCA	1 cut(s)	2570
MseI	TTAA	6 cut(s)	140, 1221, 1491, 1743, 2046, 2540
MslI	CAYNNNNRTG	3 cut(s)	127, 1737, 2583
Msp20I	TGGCCA	1 cut(s)	2570
MspA1I	CMGCKG	2 cut(s)	1100, 2456
MspI	CCGG	6 cut(s)	110, 133, 269, 350, 756, 1140
MspR9I	CCNGG	5 cut(s)	606, 1749, 2168, 2250, 2827
MunI	CAATTG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	837
MvaI	CCWGG	5 cut(s)	606, 1749, 2168, 2250, 2827
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	8 cut(s)	39, 124, 626, 1528, 2439, 2765, 2802, 2841
NarI	GGCGCC	1 cut(s)	2844
NcoI	CCATGG	1 cut(s)	1809
NlaIV	GGNNCC	9 cut(s)	68, 131, 348, 372, 489, 2005, 2130, 2383, 2845
NmeAIII	GCCGAG	2 cut(s)	349, 603
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	2 cut(s)	622, 1314
NspI	RCATGY	6 cut(s)	1159, 1312, 1511, 1619, 1693, 1710
PaeI	GCATGC	2 cut(s)	1312, 1710
PagI	TCATGA	2 cut(s)	841, 2776
PaqCI	CACCTGC	1 cut(s)	404
PciI	ACATGT	2 cut(s)	1507, 1615
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	837
PdmI	GAANNNNTTC	1 cut(s)	1185
PfeI	GAWTC	5 cut(s)	1196, 1240, 2182, 2391, 2588
PflMI	CCANNNNNTGG	1 cut(s)	2378
PkrI	GCNGC	6 cut(s)	32, 98, 675, 1125, 2242, 2311
PleI	GAGTC	3 cut(s)	280, 531, 1010
PluTI	GGCGCC	1 cut(s)	2847
PmaCI	CACGTG	1 cut(s)	1864
PmlI	CACGTG	1 cut(s)	1864
PpsI	GAGTC	3 cut(s)	280, 531, 1010
Ppu21I	YACGTR	2 cut(s)	298, 1864
PscI	ACATGT	2 cut(s)	1507, 1615
PsiI	TTATAA	2 cut(s)	1394, 1562
Psp124BI	GAGCTC	1 cut(s)	1671
Psp6I	CCWGG	5 cut(s)	604, 1747, 2166, 2248, 2825
PspCI	CACGTG	1 cut(s)	1864
PspEI	GGTNACC	1 cut(s)	1784
PspGI	CCWGG	5 cut(s)	604, 1747, 2166, 2248, 2825
PspN4I	GGNNCC	9 cut(s)	68, 131, 348, 372, 489, 2005, 2130, 2383, 2845
PspOMI	GGGCCC	1 cut(s)	487
PspPI	GGNCC	7 cut(s)	160, 347, 487, 488, 2003, 2369, 2432
PsrI	GAACNNNNNNTAC	2 cut(s)	2482, 2514
PsuI	RGATCY	5 cut(s)	608, 1262, 2417, 2506, 2672
PvuII	CAGCTG	2 cut(s)	1100, 2456
RsaI	GTAC	6 cut(s)	296, 910, 1160, 1568, 2205, 2862
RsaNI	GTAC	6 cut(s)	295, 909, 1159, 1567, 2204, 2861
RseI	CAYNNNNRTG	3 cut(s)	127, 1737, 2583
SacI	GAGCTC	1 cut(s)	1671
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	6 cut(s)	140, 1221, 1491, 1743, 2046, 2540
SatI	GCNGC	6 cut(s)	31, 97, 674, 1124, 2241, 2310
Sau96I	GGNCC	7 cut(s)	160, 347, 487, 488, 2003, 2369, 2432
SchI	GAGTC	3 cut(s)	281, 532, 1010
ScrFI	CCNGG	5 cut(s)	606, 1749, 2168, 2250, 2827
SduI	GDGCHC	8 cut(s)	491, 605, 1444, 1671, 1702, 1734, 1996, 2401
SfaNI	GCATC	8 cut(s)	131, 400, 607, 736, 877, 1321, 2080, 2434
SfcI	CTRYAG	1 cut(s)	1272
SfoI	GGCGCC	1 cut(s)	2845
SinI	GGWCC	3 cut(s)	160, 2003, 2369
SmiMI	CAYNNNNRTG	3 cut(s)	127, 1737, 2583
SmlI	CTYRAG	2 cut(s)	1532, 2806
SmoI	CTYRAG	2 cut(s)	1532, 2806
SphI	GCATGC	2 cut(s)	1312, 1710
SspDI	GGCGCC	1 cut(s)	2843
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	5 cut(s)	899, 1703, 2144, 2319, 2870
SstI	GAGCTC	1 cut(s)	1671
StyD4I	CCNGG	5 cut(s)	604, 1747, 2166, 2248, 2825
StyI	CCWWGG	6 cut(s)	750, 1044, 1809, 2143, 2385, 2741
TaaI	ACNGT	9 cut(s)	229, 244, 913, 960, 1432, 1595, 1963, 2585, 2734
TaiI	ACGT	3 cut(s)	300, 1866, 1983
TaqI	TCGA	6 cut(s)	176, 275, 521, 903, 2259, 2613
TaqII	GACCGA	1 cut(s)	218
TatI	WGTACW	3 cut(s)	1158, 2203, 2860
TauI	GCSGC	2 cut(s)	33, 99
TfiI	GAWTC	5 cut(s)	1196, 1240, 2182, 2391, 2588
Tru1I	TTAA	6 cut(s)	140, 1221, 1491, 1743, 2046, 2540
Tru9I	TTAA	6 cut(s)	140, 1221, 1491, 1743, 2046, 2540
TscAI	CASTG	5 cut(s)	232, 1600, 1679, 2554, 2607
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	4 cut(s)	673, 1123, 2240, 2309
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	8 cut(s)	825, 830, 945, 1079, 1227, 1546, 2651, 2793
TspGWI	ACGGA	3 cut(s)	68, 231, 2384
TspRI	CASTG	5 cut(s)	232, 1600, 1679, 2554, 2607
Van91I	CCANNNNNTGG	1 cut(s)	2378
VneI	GTGCAC	1 cut(s)	1730
VpaK11BI	GGWCC	3 cut(s)	160, 2003, 2369
XagI	CCTNNNNNAGG	2 cut(s)	2142, 2171
XapI	RAATTY	5 cut(s)	463, 718, 1165, 2042, 2780
XbaI	TCTAGA	1 cut(s)	2869
XceI	RCATGY	6 cut(s)	1159, 1312, 1511, 1619, 1693, 1710
XcmI	CCANNNNNNNNNTGG	4 cut(s)	154, 1009, 1868, 2060
XmaJI	CCTAGG	1 cut(s)	2143
XmiI	GTMKAC	1 cut(s)	2718
XmnI	GAANNNNTTC	1 cut(s)	1185
XspI	CTAG	5 cut(s)	899, 1703, 2144, 2319, 2870
Zsp2I	ATGCAT	2 cut(s)	622, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.