Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002088

Physical Location & Seq

Genomic Coordinates Forward (+)

38674198 .. 38679457

Gene Structure 5260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

ATGCCCAATCCCCCAGTCTCAGATCACCGCCGCCACAGAAGCACATCGGAGACGGAGAAAGCATGGCACCTATTATCAATTCTATTCACTCTCCGCCGCCCCGCTACTCCGGAAGAGCTGGCATCGCGGTGCCGGTTGTTAAACGCCACGGCGGAGTTGGTCCTGAGCCTCTGCTCGATCCCTAATTCTCCGATTTGTTTGACCGAGGAGGAGGACGGACTGGTCACTGTGGCTATGGCAACGGTTTCGGCTTTGGAAGAGTATGCGCCGGAGTCGAGGATGGTTATGGAATTGTACGTGTTGCGGTGTTTTTATCCGAACGCCGAGTTCAGGAAGAAGAGAAAGGGGCCGGATTTGGACAATGAGGCGGTGCCGATGGCGAAAAGGAGATTGCGTGTTAGCTTTCACCACAATTTGATTGAGGGAAATTCAAATAATGAGAGAGCTTTGGGCCCTTTACTTCTTGACTTCAATGCTGAGCTTTCGAGTCTTCAAATGACACTTTTTGAACATGAGGAAGAAGGTGATGGTGTTGTTTGGCCGAGTGCTTTGATGCGTGAGGAGAGCCCTGGATCGTTAGATGCATACAATGCAGTCAATAATCTGCTGACAACTGAAGCAGATATATGCAACGTGCAGCCAATTCAAGTTGTTCGAGGTGAGGGGTGCTTCTTTGATTTGAATTTACCTCCACCAAGTTCAAATAGGGATGCTTTGGCCGGTAACGAGAGATTAAAGCATGCGAAAGATTTTACTGGCACATTTTTCTTACAAGAAGCAGAAAGCAATATTGGTGCTGGCATTCATGACACTCATTCTTGCAAAGCTTCAATGGATCAATCAAAAGACGATGAAGAACCTCTAGTCGAAGGTGCTGTGAACGAAGGTTTTGATGAAGTAAGAGCAGAAGGAGATGGTGAACAGTTTGTTTTGTCAGAGAAGGTTGACGCATTTGGTGAAGCACCCACACATTGCTTGGACTCTGAAAATACAAAGAATGTTATAGCCTTGGATAAAGACCAGAGTATGAAAAAGGCAGAGACAAAGACTGACTTCCTATCAGCTGAATGCCCTTCTCCTGAGAAGCTGCTTGCAAACTCTTCCGGAAAATTGAAGGGCATGTACACAAATTTTCCTTCACAAGAACGATTTCTTGTGGATTCGTTAGAAGATAATGAAGTTGTTGACACTCCCAAACAGCAGAATCAATGTAAAAGTGGTCAGAGATATCTCTCTGTAGAACATAAATTGAAGAAAAACAACACAAATAGCATGCATCCAAAAGAAAACATGGTGGATACTACCTCTGTATCTCCTAAGTTGGAGAAAATAAAACTACCTCGCTTTGAGGATTTTATAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGAACTGTTTACAGGGCTCAGAGGAAGAATGACGGGAAAAGGTTTGCCATAAAATGTCCCCATGTTAAAGCTCATAAACAACATGTTGATAATGAGCGGAAAATGCTTGAGCGTTTTGGGGGTAGGAACTTCATTATAAAGTACGAAGGTGCTTTCAGAAGTGGCGATAGTGAGTGCTTTATTTTGGAACATGTTGAACATGACAGACCTGAGGTCTTGAAGAAAAAGATTGATCTATTTGAGCTCCAGTGGTATGGCTATTGCATGTTTAGAGCCCTAGCATGCTTGCATAAGCAGGGTGTGGTGCACAGAGATGTTAAGCCCGGAAACTTCCTCTTCTCTCAGAAGCTAAGCAAAGGTTACCTGATTGATTTCAACCTTGCCATGGATTTACAGCAGAAGTATGCAATTAGAAATAAATCAAAATCAAATCGCCACGTGTCCTTTGGTCATGTGCCTCTCCCTCAAAGTAAATCTGCTCTACCAAACAGAGAAAAGAGGTTTGTGAGAAGTGATCTTGTAGATCCAAAGAAAACTGTTGACCCTAATAGGAATATGAGGAAGAGGGCTCAGGTTGTTCCCTTGAATAACGATCCTAAGATGAGTGTTGGGAATAAATTTAAAATCCAGCGTGCGGATGGCTCAGGTATAACCTCCACTAAGGATGCGACAGACAAAACTCCATCCACAGAAAGGGTGAGGGAACCTCTGCCTTGCCTAGGAAGAAAAGAGTTGATCAGCCTGGCGCAGGATGTGATTCGTAGTCCAGTCCATGATGTACTAAAATCTCCTGCTTCCAAAAGGAAAAGGATTGCTGCTTCTCCAGGCAAGATCGACAGCAAACTAATCTATACAACTCCAATGTCTCTAAACTTTACTGGTGCAGCTATTTCTAGTGCCAATTTACTGAAAAGCAAAGGGGACTGGAAACAAAAGAGAGAAGGTCCATGTGCTGGAACCAAGGGATTCCGTGCTCCAGAGGTCTTGTTCAGATCTCTGCATCAAGGCCCTAAGGGCGATGTCTGGTCAGCTGGAGTTACCCTGCTTTACCTGATGATAGGAAGAACTCCTTTTACTGGAGATCCTGAACAGAATATAAAAGATATAGCAAAGTTAAAGGGCAGTGAAGACTTATGGGAAGTGGCCAAGCTACATGACCGTGAATCCTCGTTTCCAGTGGAGTTATTCGATGTCAAATCCTTGCCATCAATGAAACTACAAAGTTGGTGCAAGGCTCACACAAAGAGATCTGAGTTTTTCAATCTCATTCCAAGATCGCTATTTGATCTTGTAGACAAGTGCTTGACAGTAAATCCAAGGCTGAGGATCAGCGCAGAGGAAGCTCTCAATCATGAATTCTTTGCCCCATGCCACGAGAGCTTGAGGAAGCACAGGATGTCCAGGCGGGGCAGTATGGGCGCCCAGAATGATCTTGTACAAAGTCTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

Pkinase

Protein Analysis

946

Amino Acids

106.58

Weight (kDa)

8.22

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	455 - 606	1e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	456 - 599	4.7e-24	Protein kinase domain
Pkinase	PF00069	780 - 917	6.6e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16970
fragaria_vesca	FvH4_5g20210 FvH4_5g20210 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370
malus_domestica	MD04G1051700.v1.1 MD06G1048400.v1.1 MD07G1109800.v1.1
prunus_persica	Prupe.5G058600_v2.0.a1 Prupe.5G058600_v2.0.a1
pyrus_communis	pycom04g04540 pycom06g04150 pycom07g09450 pycom07g09460
rosa_chinensis	RchiOBHm_Chr1g0348071 RchiOBHm_Chr7g0205281
rosa_laevigata	RLG00000003391 RLG00000028693
rosa_multiflora	Rmu_co8277205.1_g000001 Rmu_sc0000253.1_g000018 Rmu_sc0001072.1_g000017 Rmu_sc0002523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252510 Rroxscaffold_4G00307260 Rroxscaffold_4G00307270
rosa_rugosa	Rorug01G0192000 Rorug01G0192100 Rorug07G0089300 Rorug07G0089400.1
rosa_samantha	Rh1AG209800 Rh1BG175400 Rh1CG194200 Rh1DG205200 Rh7AG219800 Rh7BG215900 Rh7CG232700 Rh7DG226800
rosa_wichuraiana	Rw1G017500 Rw7G019010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1358, 1526
AasI	GACNNNNNNGTC	1 cut(s)	221
AccB1I	GGYRCC	4 cut(s)	66, 129, 370, 2807
AccB7I	CCANNNNNTGG	1 cut(s)	2342
AccBSI	CCGCTC	1 cut(s)	1486
AccI	GTMKAC	1 cut(s)	2682
AccII	CGCG	1 cut(s)	127
AccIII	TCCGGA	2 cut(s)	109, 1103
AclWI	GGATC	7 cut(s)	172, 580, 843, 1907, 1976, 2465, 2723
AcoI	YGGCCR	3 cut(s)	539, 717, 2532
AcsI	RAATTY	5 cut(s)	427, 682, 1129, 2006, 2744
AcuI	CTGAAG	1 cut(s)	636
AcvI	CACGTG	1 cut(s)	1828
AcyI	GRCGYC	1 cut(s)	2808
AfaI	GTAC	5 cut(s)	296, 1124, 1532, 2169, 2826
AfiI	CCNNNNNNNGG	8 cut(s)	330, 1774, 2023, 2082, 2108, 2137, 2342, 2465
AflIII	ACRYGT	4 cut(s)	297, 1471, 1579, 1827
AhdI	GACNNNNNGTC	1 cut(s)	1601
AjnI	CCWGG	4 cut(s)	568, 2130, 2212, 2789
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
Alw21I	GWGCWC	3 cut(s)	1635, 1698, 2365
Alw26I	GTCTC	4 cut(s)	22, 44, 1034, 2259
Alw44I	GTGCAC	1 cut(s)	1694
AlwI	GGATC	7 cut(s)	172, 580, 843, 1907, 1976, 2465, 2723
Aor13HI	TCCGGA	2 cut(s)	109, 1103
AoxI	GGCC	6 cut(s)	347, 451, 539, 717, 2395, 2532
ApaI	GGGCCC	1 cut(s)	455
ApaLI	GTGCAC	1 cut(s)	1694
ApeKI	GCWGC	4 cut(s)	637, 1087, 2204, 2273
ApoI	RAATTY	5 cut(s)	427, 682, 1129, 2006, 2744
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspA2I	CCTAGG	1 cut(s)	2107
AspLEI	GCGC	4 cut(s)	268, 2137, 2723, 2810
AspS9I	GGNCC	6 cut(s)	160, 347, 451, 452, 2333, 2396
AsuC2I	CCSGG	1 cut(s)	1713
AsuHPI	GGTGA	7 cut(s)	17, 398, 536, 671, 929, 968, 2098
AvaII	GGWCC	2 cut(s)	160, 2333
AvrII	CCTAGG	1 cut(s)	2107
AxyI	CCTNAGG	2 cut(s)	1599, 2400
BaeGI	GKGCMC	2 cut(s)	455, 1698
BaeI	ACNNNNGTAYC	2 cut(s)	1293, 1326
BalI	TGGCCA	1 cut(s)	2534
BanI	GGYRCC	4 cut(s)	66, 129, 370, 2807
BanII	GRGCYC	6 cut(s)	455, 569, 1408, 1635, 1666, 1960
BarI	GAAGNNNNNNTAC	2 cut(s)	1106, 1138
BauI	CACGAG	1 cut(s)	2762
BbrPI	CACGTG	1 cut(s)	1828
BbsI	GAAGAC	2 cut(s)	482, 2523
Bbv12I	GWGCWC	3 cut(s)	1635, 1698, 2365
BbvCI	CCTCAGC	1 cut(s)	2711
BbvI	GCAGC	4 cut(s)	649, 1074, 2191, 2285
BccI	CCATC	7 cut(s)	274, 370, 521, 908, 2021, 2080, 2602
BceAI	ACGGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BciT130I	CCWGG	4 cut(s)	570, 2132, 2214, 2791
BciVI	GTATCC	1 cut(s)	1291
BclI	TGATCA	1 cut(s)	2124
BcnI	CCSGG	1 cut(s)	1713
BcoDI	GTCTC	4 cut(s)	22, 44, 1034, 2259
BfaI	CTAG	5 cut(s)	863, 1667, 2108, 2283, 2834
BfmI	CTRYAG	1 cut(s)	1236
BfoI	RGCGCY	1 cut(s)	2811
BfuI	GTATCC	1 cut(s)	1291
BglI	GCCNNNNNGGC	1 cut(s)	2403
BglII	AGATCT	2 cut(s)	2381, 2636
BisI	GCNGC	6 cut(s)	31, 97, 638, 1088, 2205, 2274
BlnI	CCTAGG	1 cut(s)	2107
BlpI	GCTNAGC	2 cut(s)	477, 1739
BlsI	GCNGC	6 cut(s)	32, 98, 639, 1089, 2206, 2275
Bme1390I	CCNGG	5 cut(s)	570, 1713, 2132, 2214, 2791
Bme18I	GGWCC	2 cut(s)	160, 2333
BmeRI	GACNNNNNGTC	1 cut(s)	1601
BmgT120I	GGNCC	6 cut(s)	160, 347, 451, 452, 2333, 2396
BmiI	GGNNCC	8 cut(s)	68, 131, 348, 372, 453, 2094, 2347, 2809
BmrFI	CCNGG	5 cut(s)	570, 1713, 2132, 2214, 2791
BmrI	ACTGGG	1 cut(s)	8
BmsI	GCATC	7 cut(s)	131, 543, 571, 700, 1285, 2044, 2398
BmuI	ACTGGG	1 cut(s)	8
BpiI	GAAGAC	2 cut(s)	482, 2523
BplI	GAGNNNNNCTC	2 cut(s)	2080, 2112
BpmI	CTGGAG	5 cut(s)	1619, 2196, 2349, 2442, 2487
Bpu10I	CCTNAGC	4 cut(s)	164, 1959, 2032, 2711
Bpu1102I	GCTNAGC	2 cut(s)	477, 1739
BpuEI	CTTGAG	2 cut(s)	1517, 2791
BpuMI	CCSGG	1 cut(s)	1713
BsaAI	YACGTR	2 cut(s)	298, 1828
BsaHI	GRCGYC	1 cut(s)	2808
BsaJI	CCNNGG	8 cut(s)	147, 204, 568, 1008, 1773, 2107, 2349, 2705
BsaWI	WCCGGW	2 cut(s)	109, 1103
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	8 cut(s)	330, 1774, 2023, 2082, 2108, 2137, 2342, 2465
Bse118I	RCCGGY	2 cut(s)	132, 719
Bse1I	ACTGG	9 cut(s)	14, 225, 760, 1636, 2156, 2272, 2318, 2470, 2564
Bse21I	CCTNAGG	2 cut(s)	1599, 2400
Bse3DI	GCAATG	1 cut(s)	970
BseAI	TCCGGA	2 cut(s)	109, 1103
BseBI	CCWGG	4 cut(s)	570, 2132, 2214, 2791
BseDI	CCNNGG	8 cut(s)	147, 204, 568, 1008, 1773, 2107, 2349, 2705
BseGI	GGATG	8 cut(s)	285, 715, 1276, 2032, 2059, 2072, 2146, 2790
BseLI	CCNNNNNNNGG	8 cut(s)	330, 1774, 2023, 2082, 2108, 2137, 2342, 2465
BseMI	GCAATG	1 cut(s)	970
BseNI	ACTGG	9 cut(s)	14, 225, 760, 1636, 2156, 2272, 2318, 2470, 2564
BseRI	GAGGAG	3 cut(s)	221, 224, 575
BseSI	GKGCMC	2 cut(s)	455, 1698
BseXI	GCAGC	4 cut(s)	649, 1074, 2191, 2285
BsgI	GTGCAG	2 cut(s)	656, 2292
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	6 cut(s)	349, 453, 541, 719, 2397, 2534
BshNI	GGYRCC	4 cut(s)	66, 129, 370, 2807
BsiHKAI	GWGCWC	3 cut(s)	1635, 1698, 2365
BsiSI	CCGG	7 cut(s)	110, 133, 269, 350, 720, 1104, 1713
BslFI	GGGAC	2 cut(s)	1431, 2324
BslI	CCNNNNNNNGG	8 cut(s)	330, 1774, 2023, 2082, 2108, 2137, 2342, 2465
BsmAI	GTCTC	4 cut(s)	22, 44, 1034, 2259
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	1431, 2324
BsmI	GAATGC	2 cut(s)	801, 1073
BsnI	GGCC	6 cut(s)	349, 453, 541, 719, 2397, 2534
Bsp120I	GGGCCC	1 cut(s)	451
Bsp1286I	GDGCHC	8 cut(s)	455, 569, 1408, 1635, 1666, 1698, 1960, 2365
Bsp13I	TCCGGA	2 cut(s)	109, 1103
Bsp1407I	TGTACA	2 cut(s)	1122, 2824
Bsp1720I	GCTNAGC	2 cut(s)	477, 1739
Bsp19I	CCATGG	1 cut(s)	1773
BspANI	GGCC	6 cut(s)	349, 453, 541, 719, 2397, 2534
BspEI	TCCGGA	2 cut(s)	109, 1103
BspFNI	CGCG	1 cut(s)	127
BspHI	TCATGA	2 cut(s)	805, 2740
BspLI	GGNNCC	8 cut(s)	68, 131, 348, 372, 453, 2094, 2347, 2809
BspPI	GGATC	7 cut(s)	172, 580, 843, 1907, 1976, 2465, 2723
BspQI	GCTCTTC	1 cut(s)	108
BspT107I	GGYRCC	4 cut(s)	66, 129, 370, 2807
BsrBI	CCGCTC	1 cut(s)	1486
BsrDI	GCAATG	1 cut(s)	970
BsrFI	RCCGGY	2 cut(s)	132, 719
BsrGI	TGTACA	2 cut(s)	1122, 2824
BsrI	ACTGG	9 cut(s)	14, 225, 760, 1636, 2156, 2272, 2318, 2470, 2564
BssAI	RCCGGY	2 cut(s)	132, 719
BssECI	CCNNGG	8 cut(s)	147, 204, 568, 1008, 1773, 2107, 2349, 2705
BssNI	GRCGYC	1 cut(s)	2808
BssSI	CACGAG	1 cut(s)	2762
BssT1I	CCWWGG	5 cut(s)	1008, 1773, 2107, 2349, 2705
Bst2BI	CACGAG	1 cut(s)	2762
Bst2UI	CCWGG	4 cut(s)	570, 2132, 2214, 2791
Bst4CI	ACNGT	7 cut(s)	229, 244, 924, 1396, 1927, 2549, 2698
Bst6I	CTCTTC	6 cut(s)	108, 252, 332, 1105, 1730, 1946
BstACI	GRCGYC	1 cut(s)	2808
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstAUI	TGTACA	2 cut(s)	1122, 2824
BstBAI	YACGTR	2 cut(s)	298, 1828
BstC8I	GCNNGC	8 cut(s)	120, 741, 799, 1092, 1274, 1672, 1676, 2022
BstDSI	CCRYGG	2 cut(s)	147, 1773
BstEII	GGTNACC	1 cut(s)	1748
BstENI	CCTNNNNNAGG	2 cut(s)	2106, 2135
BstF5I	GGATG	8 cut(s)	285, 715, 1276, 2032, 2059, 2072, 2146, 2790
BstFNI	CGCG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	2811
BstHHI	GCGC	4 cut(s)	268, 2137, 2723, 2810
BstMAI	GTCTC	4 cut(s)	22, 44, 1034, 2259
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 124, 590, 1492, 2403, 2729, 2766, 2805
BstNI	CCWGG	4 cut(s)	570, 2132, 2214, 2791
BstNSI	RCATGY	7 cut(s)	743, 1123, 1276, 1475, 1583, 1657, 1674
BstPI	GGTNACC	1 cut(s)	1748
BstSCI	CCNGG	5 cut(s)	568, 1711, 2130, 2212, 2789
BstSFI	CTRYAG	1 cut(s)	1236
BstSLI	GKGCMC	2 cut(s)	455, 1698
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	4 cut(s)	649, 1074, 2191, 2285
BstV2I	GAAGAC	2 cut(s)	482, 2523
BstX2I	RGATCY	4 cut(s)	1912, 2381, 2470, 2636
BstXI	CCANNNNNNTGG	1 cut(s)	1643
BstYI	RGATCY	4 cut(s)	1912, 2381, 2470, 2636
Bsu36I	CCTNAGG	2 cut(s)	1599, 2400
BsuI	GTATCC	1 cut(s)	1291
BsuRI	GGCC	6 cut(s)	349, 453, 541, 719, 2397, 2534
BtgI	CCRYGG	2 cut(s)	147, 1773
BtgZI	GCGATG	2 cut(s)	108, 2421
BtsCI	GGATG	8 cut(s)	285, 715, 1276, 2032, 2059, 2072, 2146, 2790
BtsI	GCAGTG	1 cut(s)	2518
BtsIMutI	CAGTG	4 cut(s)	225, 1643, 2518, 2571
Cac8I	GCNNGC	8 cut(s)	120, 741, 799, 1092, 1274, 1672, 1676, 2022
CciI	TCATGA	2 cut(s)	805, 2740
CfoI	GCGC	4 cut(s)	268, 2137, 2723, 2810
Cfr10I	RCCGGY	2 cut(s)	132, 719
Cfr13I	GGNCC	6 cut(s)	160, 347, 451, 452, 2333, 2396
CseI	GACGC	1 cut(s)	956
Csp6I	GTAC	5 cut(s)	295, 1123, 1531, 2168, 2825
CviQI	GTAC	5 cut(s)	295, 1123, 1531, 2168, 2825
DinI	GGCGCC	1 cut(s)	2809
DraI	TTTAAA	1 cut(s)	2011
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	1601
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	3 cut(s)	539, 717, 2532
Eam1104I	CTCTTC	6 cut(s)	108, 252, 332, 1105, 1730, 1946
Eam1105I	GACNNNNNGTC	1 cut(s)	1601
EarI	CTCTTC	6 cut(s)	108, 252, 332, 1105, 1730, 1946
EciI	GGCGGA	2 cut(s)	83, 167
Ecl136II	GAGCTC	1 cut(s)	1633
Eco130I	CCWWGG	5 cut(s)	1008, 1773, 2107, 2349, 2705
Eco24I	GRGCYC	6 cut(s)	455, 569, 1408, 1635, 1666, 1960
Eco32I	GATATC	1 cut(s)	1229
Eco47I	GGWCC	2 cut(s)	160, 2333
Eco53kI	GAGCTC	1 cut(s)	1633
Eco57I	CTGAAG	1 cut(s)	636
Eco72I	CACGTG	1 cut(s)	1828
Eco81I	CCTNAGG	2 cut(s)	1599, 2400
Eco91I	GGTNACC	1 cut(s)	1748
EcoICRI	GAGCTC	1 cut(s)	1633
EcoNI	CCTNNNNNAGG	2 cut(s)	2106, 2135
EcoO109I	RGGNCCY	2 cut(s)	452, 2396
EcoO65I	GGTNACC	1 cut(s)	1748
EcoRI	GAATTC	1 cut(s)	2744
EcoRII	CCWGG	4 cut(s)	568, 2130, 2212, 2789
EcoRV	GATATC	1 cut(s)	1229
EcoT14I	CCWWGG	5 cut(s)	1008, 1773, 2107, 2349, 2705
EcoT22I	ATGCAT	2 cut(s)	586, 1278
EcoT38I	GRGCYC	6 cut(s)	455, 569, 1408, 1635, 1666, 1960
EgeI	GGCGCC	1 cut(s)	2809
EheI	GGCGCC	1 cut(s)	2809
ErhI	CCWWGG	5 cut(s)	1008, 1773, 2107, 2349, 2705
Esp3I	CGTCTC	1 cut(s)	44
FalI	AAGNNNNNCTT	4 cut(s)	1037, 1069, 2443, 2475
FaqI	GGGAC	2 cut(s)	1431, 2324
FauI	CCCGC	2 cut(s)	109, 2787
FbaI	TGATCA	1 cut(s)	2124
FblI	GTMKAC	1 cut(s)	2682
Fnu4HI	GCNGC	6 cut(s)	31, 97, 638, 1088, 2205, 2274
FokI	GGATG	8 cut(s)	292, 722, 1263, 2039, 2059, 2066, 2153, 2797
FriOI	GRGCYC	6 cut(s)	455, 569, 1408, 1635, 1666, 1960
Fsp4HI	GCNGC	6 cut(s)	31, 97, 638, 1088, 2205, 2274
FspBI	CTAG	5 cut(s)	863, 1667, 2108, 2283, 2834
GlaI	GCGC	4 cut(s)	267, 2136, 2722, 2809
GluI	GCNGC	6 cut(s)	31, 97, 638, 1088, 2205, 2274
GsuI	CTGGAG	5 cut(s)	1619, 2196, 2349, 2442, 2487
HaeII	RGCGCY	1 cut(s)	2811
HaeIII	GGCC	6 cut(s)	349, 453, 541, 719, 2397, 2534
HapII	CCGG	7 cut(s)	110, 133, 269, 350, 720, 1104, 1713
HgaI	GACGC	1 cut(s)	956
HhaI	GCGC	4 cut(s)	268, 2137, 2723, 2810
Hin1I	GRCGYC	1 cut(s)	2808
Hin6I	GCGC	4 cut(s)	266, 2135, 2721, 2808
HinP1I	GCGC	4 cut(s)	266, 2135, 2721, 2808
HincII	GTYRAC	3 cut(s)	946, 1186, 1930
HindII	GTYRAC	3 cut(s)	946, 1186, 1930
HindIII	AAGCTT	1 cut(s)	825
HinfI	GANTC	8 cut(s)	272, 487, 980, 1160, 1204, 2146, 2355, 2552
HpaII	CCGG	7 cut(s)	110, 133, 269, 350, 720, 1104, 1713
HphI	GGTGA	7 cut(s)	17, 398, 536, 671, 929, 968, 2098
Hpy166II	GTNNAC	9 cut(s)	880, 920, 946, 1125, 1186, 1399, 1696, 1930, 2683
Hpy8I	GTNNAC	9 cut(s)	880, 920, 946, 1125, 1186, 1399, 1696, 1930, 2683
HpyCH4III	ACNGT	7 cut(s)	229, 244, 924, 1396, 1927, 2549, 2698
HpyCH4IV	ACGT	3 cut(s)	297, 633, 1827
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 124, 590, 1492, 2403, 2729, 2766, 2805
HpySE526I	ACGT	3 cut(s)	297, 633, 1827
Hsp92I	GRCGYC	1 cut(s)	2808
HspAI	GCGC	4 cut(s)	266, 2135, 2721, 2808
KasI	GGCGCC	1 cut(s)	2807
Kpn2I	TCCGGA	2 cut(s)	109, 1103
Ksp22I	TGATCA	1 cut(s)	2124
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	1638, 2368
Lsp1109I	GCAGC	4 cut(s)	649, 1074, 2191, 2285
LweI	GCATC	7 cut(s)	131, 543, 571, 700, 1285, 2044, 2398
MaeI	CTAG	5 cut(s)	863, 1667, 2108, 2283, 2834
MaeII	ACGT	3 cut(s)	297, 633, 1827
MaeIII	GTNAC	4 cut(s)	223, 722, 1748, 2425
MbiI	CCGCTC	1 cut(s)	1486
MflI	RGATCY	4 cut(s)	1912, 2381, 2470, 2636
MhlI	GDGCHC	8 cut(s)	455, 569, 1408, 1635, 1666, 1698, 1960, 2365
MlsI	TGGCCA	1 cut(s)	2534
MluNI	TGGCCA	1 cut(s)	2534
Mly113I	GGCGCC	1 cut(s)	2808
MlyI	GAGTC	3 cut(s)	281, 496, 974
MmeI	TCCRAC	1 cut(s)	1302
Mox20I	TGGCCA	1 cut(s)	2534
Mph1103I	ATGCAT	2 cut(s)	586, 1278
MroI	TCCGGA	2 cut(s)	109, 1103
MroXI	GAANNNNTTC	1 cut(s)	1149
MscI	TGGCCA	1 cut(s)	2534
MseI	TTAA	6 cut(s)	140, 734, 1455, 1707, 2010, 2504
MslI	CAYNNNNRTG	3 cut(s)	127, 1701, 2547
Msp20I	TGGCCA	1 cut(s)	2534
MspA1I	CMGCKG	2 cut(s)	1064, 2420
MspI	CCGG	7 cut(s)	110, 133, 269, 350, 720, 1104, 1713
MspR9I	CCNGG	5 cut(s)	570, 1713, 2132, 2214, 2791
Mva1269I	GAATGC	2 cut(s)	801, 1073
MvaI	CCWGG	4 cut(s)	570, 2132, 2214, 2791
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	8 cut(s)	39, 124, 590, 1492, 2403, 2729, 2766, 2805
NarI	GGCGCC	1 cut(s)	2808
NciI	CCSGG	1 cut(s)	1713
NcoI	CCATGG	1 cut(s)	1773
NlaIV	GGNNCC	8 cut(s)	68, 131, 348, 372, 453, 2094, 2347, 2809
NmeAIII	GCCGAG	2 cut(s)	349, 567
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	2 cut(s)	586, 1278
NspI	RCATGY	7 cut(s)	743, 1123, 1276, 1475, 1583, 1657, 1674
PaeI	GCATGC	3 cut(s)	743, 1276, 1674
PagI	TCATGA	2 cut(s)	805, 2740
PciI	ACATGT	2 cut(s)	1471, 1579
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	2 cut(s)	801, 1073
PdmI	GAANNNNTTC	1 cut(s)	1149
PfeI	GAWTC	5 cut(s)	1160, 1204, 2146, 2355, 2552
PflMI	CCANNNNNTGG	1 cut(s)	2342
PkrI	GCNGC	6 cut(s)	32, 98, 639, 1089, 2206, 2275
PleI	GAGTC	3 cut(s)	280, 495, 974
PluTI	GGCGCC	1 cut(s)	2811
PmaCI	CACGTG	1 cut(s)	1828
PmlI	CACGTG	1 cut(s)	1828
PpsI	GAGTC	3 cut(s)	280, 495, 974
Ppu21I	YACGTR	2 cut(s)	298, 1828
PscI	ACATGT	2 cut(s)	1471, 1579
PsiI	TTATAA	2 cut(s)	1358, 1526
Psp124BI	GAGCTC	1 cut(s)	1635
Psp6I	CCWGG	4 cut(s)	568, 2130, 2212, 2789
PspCI	CACGTG	1 cut(s)	1828
PspEI	GGTNACC	1 cut(s)	1748
PspGI	CCWGG	4 cut(s)	568, 2130, 2212, 2789
PspN4I	GGNNCC	8 cut(s)	68, 131, 348, 372, 453, 2094, 2347, 2809
PspOMI	GGGCCC	1 cut(s)	451
PspPI	GGNCC	6 cut(s)	160, 347, 451, 452, 2333, 2396
PsrI	GAACNNNNNNTAC	2 cut(s)	2446, 2478
PsuI	RGATCY	4 cut(s)	1912, 2381, 2470, 2636
PvuII	CAGCTG	2 cut(s)	1064, 2420
RsaI	GTAC	5 cut(s)	296, 1124, 1532, 2169, 2826
RsaNI	GTAC	5 cut(s)	295, 1123, 1531, 2168, 2825
RseI	CAYNNNNRTG	3 cut(s)	127, 1701, 2547
SacI	GAGCTC	1 cut(s)	1635
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	6 cut(s)	140, 734, 1455, 1707, 2010, 2504
SatI	GCNGC	6 cut(s)	31, 97, 638, 1088, 2205, 2274
Sau96I	GGNCC	6 cut(s)	160, 347, 451, 452, 2333, 2396
SchI	GAGTC	3 cut(s)	281, 496, 974
ScrFI	CCNGG	5 cut(s)	570, 1713, 2132, 2214, 2791
SduI	GDGCHC	8 cut(s)	455, 569, 1408, 1635, 1666, 1698, 1960, 2365
SfaNI	GCATC	7 cut(s)	131, 543, 571, 700, 1285, 2044, 2398
SfcI	CTRYAG	1 cut(s)	1236
SfoI	GGCGCC	1 cut(s)	2809
SinI	GGWCC	2 cut(s)	160, 2333
SmiMI	CAYNNNNRTG	3 cut(s)	127, 1701, 2547
SmlI	CTYRAG	2 cut(s)	1496, 2770
SmoI	CTYRAG	2 cut(s)	1496, 2770
SphI	GCATGC	3 cut(s)	743, 1276, 1674
SspDI	GGCGCC	1 cut(s)	2807
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	5 cut(s)	863, 1667, 2108, 2283, 2834
SstI	GAGCTC	1 cut(s)	1635
StyD4I	CCNGG	5 cut(s)	568, 1711, 2130, 2212, 2789
StyI	CCWWGG	5 cut(s)	1008, 1773, 2107, 2349, 2705
TaaI	ACNGT	7 cut(s)	229, 244, 924, 1396, 1927, 2549, 2698
TaiI	ACGT	3 cut(s)	300, 636, 1830
TaqI	TCGA	7 cut(s)	176, 275, 485, 655, 867, 2223, 2577
TaqII	GACCGA	1 cut(s)	218
TatI	WGTACW	3 cut(s)	1122, 2167, 2824
TauI	GCSGC	2 cut(s)	33, 99
TfiI	GAWTC	5 cut(s)	1160, 1204, 2146, 2355, 2552
Tru1I	TTAA	6 cut(s)	140, 734, 1455, 1707, 2010, 2504
Tru9I	TTAA	6 cut(s)	140, 734, 1455, 1707, 2010, 2504
TscAI	CASTG	4 cut(s)	232, 1643, 2518, 2571
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	4 cut(s)	637, 1087, 2204, 2273
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	8 cut(s)	794, 867, 909, 1043, 1191, 1510, 2615, 2757
TspGWI	ACGGA	3 cut(s)	68, 231, 2348
TspRI	CASTG	4 cut(s)	232, 1643, 2518, 2571
Van91I	CCANNNNNTGG	1 cut(s)	2342
VneI	GTGCAC	1 cut(s)	1694
VpaK11BI	GGWCC	2 cut(s)	160, 2333
XagI	CCTNNNNNAGG	2 cut(s)	2106, 2135
XapI	RAATTY	5 cut(s)	427, 682, 1129, 2006, 2744
XbaI	TCTAGA	1 cut(s)	2833
XceI	RCATGY	7 cut(s)	743, 1123, 1276, 1475, 1583, 1657, 1674
XcmI	CCANNNNNNNNNTGG	4 cut(s)	154, 973, 1832, 2024
XmaJI	CCTAGG	1 cut(s)	2107
XmiI	GTMKAC	1 cut(s)	2682
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	5 cut(s)	863, 1667, 2108, 2283, 2834
Zsp2I	ATGCAT	2 cut(s)	586, 1278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.