Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002088

Physical Location & Seq

Genomic Coordinates Forward (+)

42281995 .. 42287969

Gene Structure 5975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGACACTTTTTGAACATGAGGAAGAAGGTGATGGTGTTGTTTGGCCGAGTGCTTTGATGCGTGAGGAGAGCCCTGGATCGTTAGATGCATACAATGCAGTCAATAATCTGCTGAAAACTGAAGCAGATATATGCAACGTGCAGCCAATTCAAGTTGTTCAAGGTGAGGGGTGCTTCTTTGATTTGAATTTACCTCCGCCAAGTTCAAATCGGGATGCCTTGGCCGGTAACGAGAGATTAAAGCATGAGAAAGATTTTATTGGCACATTTTTCTTACATGAAGCAGAAAGCAATATTGGTGCTGGCATTCATGACACTCATTCTTGCAAAGCTTCAATGGATCAATCAAAAGACGATGCAGAACCTCTAGTCGAAGGTACTGTGAACGAAGGTTTTGATGAAGTAAGAGCAGAAGGAGATGGTGAACAGTTTGTTTTGTCAGAGAAGGTTGACGCATTTGGTGAAGCACCCACACATTGCTTGGACTCTGAAAATACAAAGAATGTTATAGCCTTGGATAAAGACCAGAGTATGAAAAAGGCAGAGACAAAGACTGACTTCCTATCAGCTGAATGCCCTTCTCCTGAGAAGCTGCTTGCAAACTCTTCCGGAAAATTGAAGGGCATGTACACAAATTTTCCTTCACAAGAACGATTTCTTGTGGATTCGTTAGAAGATAATGAAGTTGTTAACACTCCCAAACAGCAGAATCAATGTAAAAGTGGTCAGAGATCTCTCTCTGTAGAACATAAATTGAAGAAAAACAACACAAATAGCATGCATCCAAAAGAGAACATGGTGGATACTACCTCTATATCTCCTAAGTTGGAGAAAATAAAACTACCTCGCTTTGAGGATTTTATAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGAACTGTTTACAGGGCTCAGAGGAAGAATGACGGGAAAAGGTTTGCCATAAAATGTCCCCATCTTAAAGCTCATAAACAACATGTTGATAATGAGCGGAAAATGCTTGAGCGTTTTGGGGGTAGGAACTTCATTATAAAGTACGAAGGTGCTTTCAGAAGTGGCGACAGTGAGTGCTTTATTTTGGAACATGTTGAACATGACAGACCTGAGGTCTTGAAGAAAAAGATTGATCTATTTGAGCTCCAGTGGTATGGCTATTGCATGTTTAGAGCCCTAGCATGCTTGCATAAGCAGGGTGTGGTGCACAGAGATGTTAAGCCCGGAAACTTCCTCTTCTCTCAGAAGCTAAGCAAAGGTTACCTGATTGATTTCAACCTTGCCATGGATTTACAGCAGAAGTATGCAATTAGAAATAAATCAAAATCAAATCGCCACGTGTCCTTTGGTCATGTGCCTCTCCCTCAAAGTAAATCTGCTCTACCAAACAGAGAAAAGAGGTTTGTGAGAAGTGATCTTGTAGATCCAAAGAAAACTGTTGACCCTAATAGGAACGTGAGGAAGAGGGCTCAGGTTGGTCCCTTGAATAACGATCCTAAGATGAGTGTTGGGAATAAATTTAAAAGCCAGCGTGCGGATGGCTCAGGTATAACCTCCACTAAGGATGCGACAGACAAAACTCCATCCACAGAAAGGGTGAGGGAACCTCTGCCTTGCCTAGGAAGAAAAGAGTTGATCAGCCTGGCGCAGGATGTGATTCTTAGTCCAGTCCATGATGTACTAAAATCTCCTGCTTCCAAAAGGAAAAGGATTGCTGCTTCTCCAGGCAAGATCGACAGCAAACTAATCTATACAACTCCAATGTCTCTGAACTTTACTGGTGCAGCTATTTCTAGTGCCAATTTACTGAAAAGCAAAGGGGACGGGAAACAAAAGAGAGAAGGTCCATGTGCTGGAACCAAGGGATTCCGTGCTCCAGAGGTCTTGTTCAGATCTCTGCATCAAGGCCCTAAGGGCGATGTCTGGTCAGCTGGAGTTACCCTGCTTTACCTGATGATCGGAAGAACTCCTTTTACTGGAGATCCTGAACAGAATATAAAAGATATAGCAAAGTTAAAGGGCAGTGAAGACTTATGGGAAGTGGCCAAGCTACATGACCGTGAATCCTCTTTTCCAGTGGAGTTATTCGATGTCAAATCCTTGCCATCAATGAAACTACAAAGTTGGTGCAAGGCTCACGCAAAGAGATCTGAGTTTTTCAATCTCATTCCAAGATCGCTATTTGATCTTGTCGACAAGTGCTTGACAGTAAATCCAAGGCTGAGGATCAGCGCAGAGGAAGCTCTCAATCATGAATTCTTTGCCCCATGCCACGAGAGCTTGAGGAAGCACAGGATGTCCAGGCGGGGCAGTATGGGCGCCCAGAATGATCTTGTACAAAGTCTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

Pkinase

Protein Analysis

781

Amino Acids

87.61

Weight (kDa)

8.5

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	290 - 441	9.8e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	291 - 434	4e-24	Protein kinase domain
Pkinase	PF00069	615 - 752	4.9e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16970
fragaria_vesca	FvH4_5g20210 FvH4_5g20210 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370
malus_domestica	MD04G1051700.v1.1 MD06G1048400.v1.1 MD07G1109800.v1.1
prunus_persica	Prupe.5G058600_v2.0.a1 Prupe.5G058600_v2.0.a1
pyrus_communis	pycom04g04540 pycom06g04150 pycom07g09450 pycom07g09460
rosa_chinensis	RchiOBHm_Chr1g0348071 RchiOBHm_Chr7g0205281
rosa_laevigata	RLG00000003391 RLG00000028693
rosa_multiflora	Rmu_co8277205.1_g000001 Rmu_sc0000253.1_g000018 Rmu_sc0001072.1_g000017 Rmu_sc0002523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252510 Rroxscaffold_4G00307260 Rroxscaffold_4G00307270
rosa_rugosa	Rorug01G0192000 Rorug01G0192100 Rorug07G0089300 Rorug07G0089400.1
rosa_samantha	Rh1AG209800 Rh1BG175400 Rh1CG194200 Rh1DG205200 Rh7AG219800 Rh7BG215900 Rh7CG232700 Rh7DG226800
rosa_wichuraiana	Rw1G017500 Rw7G019010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	863, 1031
AccB1I	GGYRCC	1 cut(s)	2312
AccB7I	CCANNNNNTGG	1 cut(s)	1847
AccBSI	CCGCTC	1 cut(s)	991
AccI	GTMKAC	1 cut(s)	2187
AccIII	TCCGGA	1 cut(s)	608
AciI	CCGC	4 cut(s)	197, 991, 1529, 2299
AclWI	GGATC	6 cut(s)	85, 348, 1412, 1481, 1970, 2228
AcoI	YGGCCR	3 cut(s)	44, 222, 2037
AcsI	RAATTY	4 cut(s)	187, 634, 1511, 2249
AcuI	CTGAAG	1 cut(s)	141
AcvI	CACGTG	1 cut(s)	1333
AcyI	GRCGYC	1 cut(s)	2313
AfaI	GTAC	5 cut(s)	379, 629, 1037, 1674, 2331
AfiI	CCNNNNNNNGG	7 cut(s)	1279, 1528, 1587, 1613, 1642, 1847, 1970
AflIII	ACRYGT	3 cut(s)	976, 1084, 1332
AhdI	GACNNNNNGTC	1 cut(s)	1106
AjnI	CCWGG	4 cut(s)	73, 1635, 1717, 2294
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
Alw21I	GWGCWC	3 cut(s)	1140, 1203, 1870
Alw26I	GTCTC	2 cut(s)	539, 1764
Alw44I	GTGCAC	1 cut(s)	1199
AlwI	GGATC	6 cut(s)	85, 348, 1412, 1481, 1970, 2228
Aor13HI	TCCGGA	1 cut(s)	608
AoxI	GGCC	4 cut(s)	44, 222, 1900, 2037
ApaLI	GTGCAC	1 cut(s)	1199
ApeKI	GCWGC	4 cut(s)	142, 592, 1709, 1778
ApoI	RAATTY	4 cut(s)	187, 634, 1511, 2249
Asp700I	GAANNNNTTC	1 cut(s)	654
AspA2I	CCTAGG	1 cut(s)	1612
AspLEI	GCGC	3 cut(s)	1642, 2228, 2315
AspS9I	GGNCC	3 cut(s)	1472, 1838, 1901
AsuC2I	CCSGG	1 cut(s)	1218
AsuHPI	GGTGA	5 cut(s)	41, 176, 434, 473, 1603
AvaII	GGWCC	2 cut(s)	1472, 1838
AvrII	CCTAGG	1 cut(s)	1612
AxyI	CCTNAGG	2 cut(s)	1104, 1905
BaeGI	GKGCMC	1 cut(s)	1203
BalI	TGGCCA	1 cut(s)	2039
BanI	GGYRCC	1 cut(s)	2312
BanII	GRGCYC	5 cut(s)	74, 913, 1140, 1171, 1465
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BauI	CACGAG	1 cut(s)	2267
BbrPI	CACGTG	1 cut(s)	1333
BbsI	GAAGAC	1 cut(s)	2028
Bbv12I	GWGCWC	3 cut(s)	1140, 1203, 1870
BbvCI	CCTCAGC	1 cut(s)	2216
BbvI	GCAGC	4 cut(s)	154, 579, 1696, 1790
BccI	CCATC	6 cut(s)	26, 413, 963, 1526, 1585, 2107
BciT130I	CCWGG	4 cut(s)	75, 1637, 1719, 2296
BciVI	GTATCC	1 cut(s)	796
BclI	TGATCA	1 cut(s)	1629
BcnI	CCSGG	1 cut(s)	1218
BcoDI	GTCTC	2 cut(s)	539, 1764
BfaI	CTAG	5 cut(s)	368, 1172, 1613, 1788, 2339
BfmI	CTRYAG	1 cut(s)	741
BfoI	RGCGCY	1 cut(s)	2316
BfuI	GTATCC	1 cut(s)	796
BglI	GCCNNNNNGGC	1 cut(s)	1908
BglII	AGATCT	3 cut(s)	731, 1886, 2141
BisI	GCNGC	4 cut(s)	143, 593, 1710, 1779
BlnI	CCTAGG	1 cut(s)	1612
BlpI	GCTNAGC	1 cut(s)	1244
BlsI	GCNGC	4 cut(s)	144, 594, 1711, 1780
Bme1390I	CCNGG	5 cut(s)	75, 1218, 1637, 1719, 2296
Bme18I	GGWCC	2 cut(s)	1472, 1838
BmeRI	GACNNNNNGTC	1 cut(s)	1106
BmgT120I	GGNCC	3 cut(s)	1472, 1838, 1901
BmiI	GGNNCC	4 cut(s)	1474, 1599, 1852, 2314
BmrFI	CCNGG	5 cut(s)	75, 1218, 1637, 1719, 2296
BmsI	GCATC	7 cut(s)	48, 76, 205, 346, 790, 1549, 1903
BpiI	GAAGAC	1 cut(s)	2028
BplI	GAGNNNNNCTC	2 cut(s)	1585, 1617
BpmI	CTGGAG	5 cut(s)	1124, 1701, 1854, 1947, 1992
Bpu10I	CCTNAGC	3 cut(s)	1464, 1537, 2216
Bpu1102I	GCTNAGC	1 cut(s)	1244
BpuEI	CTTGAG	2 cut(s)	1022, 2296
BpuMI	CCSGG	1 cut(s)	1218
BsaAI	YACGTR	1 cut(s)	1333
BsaHI	GRCGYC	1 cut(s)	2313
BsaJI	CCNNGG	7 cut(s)	73, 219, 513, 1278, 1612, 1854, 2210
BsaWI	WCCGGW	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	7 cut(s)	1279, 1528, 1587, 1613, 1642, 1847, 1970
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	5 cut(s)	1141, 1661, 1777, 1975, 2069
Bse21I	CCTNAGG	2 cut(s)	1104, 1905
Bse3DI	GCAATG	1 cut(s)	475
BseAI	TCCGGA	1 cut(s)	608
BseBI	CCWGG	4 cut(s)	75, 1637, 1719, 2296
BseDI	CCNNGG	7 cut(s)	73, 219, 513, 1278, 1612, 1854, 2210
BseGI	GGATG	7 cut(s)	220, 781, 1537, 1564, 1577, 1651, 2295
BseLI	CCNNNNNNNGG	7 cut(s)	1279, 1528, 1587, 1613, 1642, 1847, 1970
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	8 cut(s)	576, 926, 1095, 1250, 1478, 1551, 2136, 2207
BseNI	ACTGG	5 cut(s)	1141, 1661, 1777, 1975, 2069
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	1203
BseXI	GCAGC	4 cut(s)	154, 579, 1696, 1790
BsgI	GTGCAG	2 cut(s)	161, 1797
BshFI	GGCC	4 cut(s)	46, 224, 1902, 2039
BshNI	GGYRCC	1 cut(s)	2312
BsiHKAI	GWGCWC	3 cut(s)	1140, 1203, 1870
BsiSI	CCGG	3 cut(s)	225, 609, 1218
BslFI	GGGAC	3 cut(s)	936, 1458, 1829
BslI	CCNNNNNNNGG	7 cut(s)	1279, 1528, 1587, 1613, 1642, 1847, 1970
BsmAI	GTCTC	2 cut(s)	539, 1764
BsmFI	GGGAC	3 cut(s)	936, 1458, 1829
BsmI	GAATGC	2 cut(s)	306, 578
BsnI	GGCC	4 cut(s)	46, 224, 1902, 2039
Bsp1286I	GDGCHC	7 cut(s)	74, 913, 1140, 1171, 1203, 1465, 1870
Bsp13I	TCCGGA	1 cut(s)	608
Bsp1407I	TGTACA	2 cut(s)	627, 2329
Bsp1720I	GCTNAGC	1 cut(s)	1244
Bsp19I	CCATGG	1 cut(s)	1278
BspACI	CCGC	4 cut(s)	197, 991, 1529, 2299
BspANI	GGCC	4 cut(s)	46, 224, 1902, 2039
BspCNI	CTCAG	8 cut(s)	577, 925, 1096, 1249, 1477, 1550, 2137, 2208
BspEI	TCCGGA	1 cut(s)	608
BspHI	TCATGA	2 cut(s)	310, 2245
BspLI	GGNNCC	4 cut(s)	1474, 1599, 1852, 2314
BspPI	GGATC	6 cut(s)	85, 348, 1412, 1481, 1970, 2228
BspT107I	GGYRCC	1 cut(s)	2312
BsrBI	CCGCTC	1 cut(s)	991
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	224
BsrGI	TGTACA	2 cut(s)	627, 2329
BsrI	ACTGG	5 cut(s)	1141, 1661, 1777, 1975, 2069
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	7 cut(s)	73, 219, 513, 1278, 1612, 1854, 2210
BssNI	GRCGYC	1 cut(s)	2313
BssSI	CACGAG	1 cut(s)	2267
BssT1I	CCWWGG	6 cut(s)	219, 513, 1278, 1612, 1854, 2210
Bst2BI	CACGAG	1 cut(s)	2267
Bst2UI	CCWGG	4 cut(s)	75, 1637, 1719, 2296
Bst4CI	ACNGT	7 cut(s)	382, 429, 901, 1064, 1432, 2054, 2203
Bst6I	CTCTTC	3 cut(s)	610, 1235, 1451
BstACI	GRCGYC	1 cut(s)	2313
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	2 cut(s)	627, 2329
BstBAI	YACGTR	1 cut(s)	1333
BstC8I	GCNNGC	7 cut(s)	304, 597, 779, 1177, 1181, 1523, 1527
BstDSI	CCRYGG	1 cut(s)	1278
BstEII	GGTNACC	1 cut(s)	1253
BstENI	CCTNNNNNAGG	2 cut(s)	1611, 1640
BstF5I	GGATG	7 cut(s)	220, 781, 1537, 1564, 1577, 1651, 2295
BstH2I	RGCGCY	1 cut(s)	2316
BstHHI	GCGC	3 cut(s)	1642, 2228, 2315
BstMAI	GTCTC	2 cut(s)	539, 1764
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 997, 1908, 2234, 2271, 2310
BstNI	CCWGG	4 cut(s)	75, 1637, 1719, 2296
BstNSI	RCATGY	6 cut(s)	628, 781, 980, 1088, 1162, 1179
BstPI	GGTNACC	1 cut(s)	1253
BstSCI	CCNGG	5 cut(s)	73, 1216, 1635, 1717, 2294
BstSFI	CTRYAG	1 cut(s)	741
BstSLI	GKGCMC	1 cut(s)	1203
BstV1I	GCAGC	4 cut(s)	154, 579, 1696, 1790
BstV2I	GAAGAC	1 cut(s)	2028
BstX2I	RGATCY	5 cut(s)	731, 1417, 1886, 1975, 2141
BstXI	CCANNNNNNTGG	1 cut(s)	1148
BstYI	RGATCY	5 cut(s)	731, 1417, 1886, 1975, 2141
Bsu36I	CCTNAGG	2 cut(s)	1104, 1905
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	4 cut(s)	46, 224, 1902, 2039
BtgI	CCRYGG	1 cut(s)	1278
BtgZI	GCGATG	1 cut(s)	1926
BtsCI	GGATG	7 cut(s)	220, 781, 1537, 1564, 1577, 1651, 2295
BtsI	GCAGTG	1 cut(s)	2023
BtsIMutI	CAGTG	4 cut(s)	1069, 1148, 2023, 2076
Cac8I	GCNNGC	7 cut(s)	304, 597, 779, 1177, 1181, 1523, 1527
CciI	TCATGA	2 cut(s)	310, 2245
CfoI	GCGC	3 cut(s)	1642, 2228, 2315
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	3 cut(s)	1472, 1838, 1901
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	5 cut(s)	378, 628, 1036, 1673, 2330
CviQI	GTAC	5 cut(s)	378, 628, 1036, 1673, 2330
DinI	GGCGCC	1 cut(s)	2314
DraI	TTTAAA	1 cut(s)	1516
DriI	GACNNNNNGTC	1 cut(s)	1106
EaeI	YGGCCR	3 cut(s)	44, 222, 2037
Eam1104I	CTCTTC	3 cut(s)	610, 1235, 1451
Eam1105I	GACNNNNNGTC	1 cut(s)	1106
EarI	CTCTTC	3 cut(s)	610, 1235, 1451
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	1138
Eco130I	CCWWGG	6 cut(s)	219, 513, 1278, 1612, 1854, 2210
Eco24I	GRGCYC	5 cut(s)	74, 913, 1140, 1171, 1465
Eco47I	GGWCC	2 cut(s)	1472, 1838
Eco53kI	GAGCTC	1 cut(s)	1138
Eco57I	CTGAAG	1 cut(s)	141
Eco72I	CACGTG	1 cut(s)	1333
Eco81I	CCTNAGG	2 cut(s)	1104, 1905
Eco91I	GGTNACC	1 cut(s)	1253
EcoICRI	GAGCTC	1 cut(s)	1138
EcoNI	CCTNNNNNAGG	2 cut(s)	1611, 1640
EcoO109I	RGGNCCY	1 cut(s)	1901
EcoO65I	GGTNACC	1 cut(s)	1253
EcoRI	GAATTC	1 cut(s)	2249
EcoRII	CCWGG	4 cut(s)	73, 1635, 1717, 2294
EcoT14I	CCWWGG	6 cut(s)	219, 513, 1278, 1612, 1854, 2210
EcoT22I	ATGCAT	2 cut(s)	91, 783
EcoT38I	GRGCYC	5 cut(s)	74, 913, 1140, 1171, 1465
EgeI	GGCGCC	1 cut(s)	2314
EheI	GGCGCC	1 cut(s)	2314
ErhI	CCWWGG	6 cut(s)	219, 513, 1278, 1612, 1854, 2210
FalI	AAGNNNNNCTT	4 cut(s)	542, 574, 1948, 1980
FaqI	GGGAC	3 cut(s)	936, 1458, 1829
FauI	CCCGC	1 cut(s)	2292
FbaI	TGATCA	1 cut(s)	1629
FblI	GTMKAC	1 cut(s)	2187
Fnu4HI	GCNGC	4 cut(s)	143, 593, 1710, 1779
FokI	GGATG	7 cut(s)	227, 768, 1544, 1564, 1571, 1658, 2302
FriOI	GRGCYC	5 cut(s)	74, 913, 1140, 1171, 1465
Fsp4HI	GCNGC	4 cut(s)	143, 593, 1710, 1779
FspBI	CTAG	5 cut(s)	368, 1172, 1613, 1788, 2339
GlaI	GCGC	3 cut(s)	1641, 2227, 2314
GluI	GCNGC	4 cut(s)	143, 593, 1710, 1779
GsuI	CTGGAG	5 cut(s)	1124, 1701, 1854, 1947, 1992
HaeII	RGCGCY	1 cut(s)	2316
HaeIII	GGCC	4 cut(s)	46, 224, 1902, 2039
HapII	CCGG	3 cut(s)	225, 609, 1218
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	3 cut(s)	1642, 2228, 2315
Hin1I	GRCGYC	1 cut(s)	2313
Hin6I	GCGC	3 cut(s)	1640, 2226, 2313
HinP1I	GCGC	3 cut(s)	1640, 2226, 2313
HincII	GTYRAC	4 cut(s)	451, 691, 1435, 2188
HindII	GTYRAC	4 cut(s)	451, 691, 1435, 2188
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	6 cut(s)	485, 665, 709, 1651, 1860, 2057
HpaI	GTTAAC	1 cut(s)	691
HpaII	CCGG	3 cut(s)	225, 609, 1218
HphI	GGTGA	5 cut(s)	41, 176, 434, 473, 1603
Hpy166II	GTNNAC	9 cut(s)	385, 425, 451, 630, 691, 904, 1201, 1435, 2188
Hpy188III	TCNNGA	9 cut(s)	212, 311, 584, 609, 1111, 1871, 1979, 2246, 2339
Hpy8I	GTNNAC	9 cut(s)	385, 425, 451, 630, 691, 904, 1201, 1435, 2188
HpyCH4III	ACNGT	7 cut(s)	382, 429, 901, 1064, 1432, 2054, 2203
HpyCH4IV	ACGT	3 cut(s)	138, 1332, 1449
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 997, 1908, 2234, 2271, 2310
HpySE526I	ACGT	3 cut(s)	138, 1332, 1449
Hsp92I	GRCGYC	1 cut(s)	2313
HspAI	GCGC	3 cut(s)	1640, 2226, 2313
KasI	GGCGCC	1 cut(s)	2312
Kpn2I	TCCGGA	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	1629
KspAI	GTTAAC	1 cut(s)	691
LmnI	GCTCC	2 cut(s)	1143, 1873
Lsp1109I	GCAGC	4 cut(s)	154, 579, 1696, 1790
LweI	GCATC	7 cut(s)	48, 76, 205, 346, 790, 1549, 1903
MaeI	CTAG	5 cut(s)	368, 1172, 1613, 1788, 2339
MaeII	ACGT	3 cut(s)	138, 1332, 1449
MaeIII	GTNAC	3 cut(s)	227, 1253, 1930
MbiI	CCGCTC	1 cut(s)	991
MflI	RGATCY	5 cut(s)	731, 1417, 1886, 1975, 2141
MhlI	GDGCHC	7 cut(s)	74, 913, 1140, 1171, 1203, 1465, 1870
MlsI	TGGCCA	1 cut(s)	2039
MluCI	AATT	9 cut(s)	147, 187, 614, 634, 752, 1302, 1511, 1795, 2249
MluNI	TGGCCA	1 cut(s)	2039
Mly113I	GGCGCC	1 cut(s)	2313
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	807
Mox20I	TGGCCA	1 cut(s)	2039
Mph1103I	ATGCAT	2 cut(s)	91, 783
MroI	TCCGGA	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	2039
MseI	TTAA	6 cut(s)	239, 690, 960, 1212, 1515, 2009
MslI	CAYNNNNRTG	2 cut(s)	1206, 2052
Msp20I	TGGCCA	1 cut(s)	2039
MspA1I	CMGCKG	2 cut(s)	569, 1925
MspI	CCGG	3 cut(s)	225, 609, 1218
MspR9I	CCNGG	5 cut(s)	75, 1218, 1637, 1719, 2296
Mva1269I	GAATGC	2 cut(s)	306, 578
MvaI	CCWGG	4 cut(s)	75, 1637, 1719, 2296
MwoI	GCNNNNNNNGC	6 cut(s)	95, 997, 1908, 2234, 2271, 2310
NarI	GGCGCC	1 cut(s)	2313
NciI	CCSGG	1 cut(s)	1218
NcoI	CCATGG	1 cut(s)	1278
NlaIV	GGNNCC	4 cut(s)	1474, 1599, 1852, 2314
NmeAIII	GCCGAG	1 cut(s)	72
NsiI	ATGCAT	2 cut(s)	91, 783
NspI	RCATGY	6 cut(s)	628, 781, 980, 1088, 1162, 1179
PaeI	GCATGC	2 cut(s)	781, 1179
PagI	TCATGA	2 cut(s)	310, 2245
PciI	ACATGT	2 cut(s)	976, 1084
PctI	GAATGC	2 cut(s)	306, 578
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	5 cut(s)	665, 709, 1651, 1860, 2057
PflMI	CCANNNNNTGG	1 cut(s)	1847
PkrI	GCNGC	4 cut(s)	144, 594, 1711, 1780
PleI	GAGTC	1 cut(s)	479
PluTI	GGCGCC	1 cut(s)	2316
PmaCI	CACGTG	1 cut(s)	1333
PmlI	CACGTG	1 cut(s)	1333
PpsI	GAGTC	1 cut(s)	479
Ppu21I	YACGTR	1 cut(s)	1333
PscI	ACATGT	2 cut(s)	976, 1084
PsiI	TTATAA	2 cut(s)	863, 1031
Psp124BI	GAGCTC	1 cut(s)	1140
Psp6I	CCWGG	4 cut(s)	73, 1635, 1717, 2294
PspCI	CACGTG	1 cut(s)	1333
PspEI	GGTNACC	1 cut(s)	1253
PspGI	CCWGG	4 cut(s)	73, 1635, 1717, 2294
PspN4I	GGNNCC	4 cut(s)	1474, 1599, 1852, 2314
PspPI	GGNCC	3 cut(s)	1472, 1838, 1901
PsrI	GAACNNNNNNTAC	2 cut(s)	1951, 1983
PsuI	RGATCY	5 cut(s)	731, 1417, 1886, 1975, 2141
PvuII	CAGCTG	2 cut(s)	569, 1925
RsaI	GTAC	5 cut(s)	379, 629, 1037, 1674, 2331
RsaNI	GTAC	5 cut(s)	378, 628, 1036, 1673, 2330
RseI	CAYNNNNRTG	2 cut(s)	1206, 2052
SacI	GAGCTC	1 cut(s)	1140
SalI	GTCGAC	1 cut(s)	2186
SaqAI	TTAA	6 cut(s)	239, 690, 960, 1212, 1515, 2009
SatI	GCNGC	4 cut(s)	143, 593, 1710, 1779
Sau96I	GGNCC	3 cut(s)	1472, 1838, 1901
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	5 cut(s)	75, 1218, 1637, 1719, 2296
SduI	GDGCHC	7 cut(s)	74, 913, 1140, 1171, 1203, 1465, 1870
SfaNI	GCATC	7 cut(s)	48, 76, 205, 346, 790, 1549, 1903
SfcI	CTRYAG	1 cut(s)	741
SfoI	GGCGCC	1 cut(s)	2314
SinI	GGWCC	2 cut(s)	1472, 1838
SmiMI	CAYNNNNRTG	2 cut(s)	1206, 2052
SmlI	CTYRAG	2 cut(s)	1001, 2275
SmoI	CTYRAG	2 cut(s)	1001, 2275
SphI	GCATGC	2 cut(s)	781, 1179
Sse9I	AATT	9 cut(s)	147, 187, 614, 634, 752, 1302, 1511, 1795, 2249
SsiI	CCGC	4 cut(s)	197, 991, 1529, 2299
SspDI	GGCGCC	1 cut(s)	2312
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	5 cut(s)	368, 1172, 1613, 1788, 2339
SstI	GAGCTC	1 cut(s)	1140
StyD4I	CCNGG	5 cut(s)	73, 1216, 1635, 1717, 2294
StyI	CCWWGG	6 cut(s)	219, 513, 1278, 1612, 1854, 2210
TaaI	ACNGT	7 cut(s)	382, 429, 901, 1064, 1432, 2054, 2203
TaiI	ACGT	3 cut(s)	141, 1335, 1452
TaqI	TCGA	4 cut(s)	372, 1728, 2082, 2187
TasI	AATT	9 cut(s)	147, 187, 614, 634, 752, 1302, 1511, 1795, 2249
TatI	WGTACW	3 cut(s)	627, 1672, 2329
TfiI	GAWTC	5 cut(s)	665, 709, 1651, 1860, 2057
Tru1I	TTAA	6 cut(s)	239, 690, 960, 1212, 1515, 2009
Tru9I	TTAA	6 cut(s)	239, 690, 960, 1212, 1515, 2009
TscAI	CASTG	4 cut(s)	1069, 1148, 2023, 2076
TseI	GCWGC	4 cut(s)	142, 592, 1709, 1778
TspDTI	ATGAA	8 cut(s)	294, 299, 414, 548, 696, 1015, 2120, 2262
TspGWI	ACGGA	1 cut(s)	1853
TspRI	CASTG	4 cut(s)	1069, 1148, 2023, 2076
Van91I	CCANNNNNTGG	1 cut(s)	1847
VneI	GTGCAC	1 cut(s)	1199
VpaK11BI	GGWCC	2 cut(s)	1472, 1838
XagI	CCTNNNNNAGG	2 cut(s)	1611, 1640
XapI	RAATTY	4 cut(s)	187, 634, 1511, 2249
XbaI	TCTAGA	1 cut(s)	2338
XceI	RCATGY	6 cut(s)	628, 781, 980, 1088, 1162, 1179
XcmI	CCANNNNNNNNNTGG	3 cut(s)	478, 1337, 1529
XmaJI	CCTAGG	1 cut(s)	1612
XmiI	GTMKAC	1 cut(s)	2187
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	5 cut(s)	368, 1172, 1613, 1788, 2339
Zsp2I	ATGCAT	2 cut(s)	91, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.