Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002088

Physical Location & Seq

Genomic Coordinates Reverse (-)

26656950 .. 26660028

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0192100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGTTCCGATTCTCATTACCAGATTCCGGCCATTGATTTCTCAATCAATTCCACGGAACTGGATCGCGGAACTGATAAGTGGTACAATTTGTGCAAGAGGGTTAGAGAGGCTTGTGAAAATTATGGTTGCTTTGAAATAGCGTATGATAAGATACCCCTGCAGTTAAAAGCAGATACCTTCTCTATGATAAGGCAACTTTTTAACCTTCCAGTGGAGACAAAAGAAAAGAATGTTAATCCAAAGCCTTTCCATGGTTATTATGGACAGTATCCCACTACTCCCTTCTATGAGAGCTTTGGCATTGAAGATTCCTCCAACTATGAGTCCTTTAAAAGCTTCACTGAGTTGATGTGGCCAGATGGTCATGAGCAGTTTTGTAACACTGTAGTTACCATGGTGAAGAAGATGGATGAGCTGAAGGAAATGATCGAAATGATGATCCTTGATAGTTATGGGTTGGGAGAGAAACTGAATTCGATTATTGCTTGTAAGACGTTGCTACGCGTGATGAAATACGATGCACCTCCATCGGGACAGTACGCAAATGGGCACTATGGGCTCACTCCTCACACTGACAAACTAGTGAGCACAATCCTTTGTGATGATCAAGTTTCAGGGCTTGAATTTGAAACCAAGGATGGGCAATGGGTCAAGTTGTCTTTATCTCCCACCTCCTACCTCTTTATTGTTGGAGATCCTCTTATGGCATGGAGTAATGGAAGAATGCATCGCCTTAAGCACAGGGTGATGATTTCAGGAGAAAAAGAGCGATATTCTTTGGGAGCATTTGGAAGTCCATTAGAGGGTACCATCATCAAGGCAGCAAAGGAGCTAGTGGATGATGAACATCCACGAATTCTCAAGGACTTTGACTATAAGGACTTCAGTAAGTTCACCTTCACACAGGAAGGAAGCGCCATAGACTCGGAAATGCAAGTTTTCGCATTTGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

Pkinase

Protein Analysis

322

Amino Acids

36.77

Weight (kDa)

5.2

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 90	7.2e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 264	1.5e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16970
fragaria_vesca	FvH4_5g20210 FvH4_5g20210 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370
malus_domestica	MD04G1051700.v1.1 MD06G1048400.v1.1 MD07G1109800.v1.1
prunus_persica	Prupe.5G058600_v2.0.a1 Prupe.5G058600_v2.0.a1
pyrus_communis	pycom04g04540 pycom06g04150 pycom07g09450 pycom07g09460
rosa_chinensis	RchiOBHm_Chr1g0348071 RchiOBHm_Chr7g0205281
rosa_laevigata	RLG00000003391 RLG00000028693
rosa_multiflora	Rmu_co8277205.1_g000001 Rmu_sc0000253.1_g000018 Rmu_sc0001072.1_g000017 Rmu_sc0002523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252510 Rroxscaffold_4G00307260 Rroxscaffold_4G00307270
rosa_rugosa	Rorug01G0192000 Rorug01G0192100 Rorug07G0089300 Rorug07G0089400.1
rosa_samantha	Rh1AG209800 Rh1BG175400 Rh1CG194200 Rh1DG205200 Rh7AG219800 Rh7BG215900 Rh7CG232700 Rh7DG226800
rosa_wichuraiana	Rw1G017500 Rw7G019010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	809
AccB1I	GGYRCC	1 cut(s)	809
AccII	CGCG	2 cut(s)	69, 507
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	3 cut(s)	72, 436, 692
AcoI	YGGCCR	2 cut(s)	30, 356
AcsI	RAATTY	3 cut(s)	475, 626, 858
AcuI	CTGAAG	2 cut(s)	440, 871
AdeI	CACNNNGTG	1 cut(s)	748
AfaI	GTAC	3 cut(s)	86, 542, 811
AfiI	CCNNNNNNNGG	6 cut(s)	28, 214, 254, 533, 642, 806
AflII	CTTAAG	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	4 cut(s)	137, 308, 626, 632
AhlI	ACTAGT	1 cut(s)	583
AluBI	AGCT	4 cut(s)	297, 339, 418, 835
AluI	AGCT	4 cut(s)	297, 339, 418, 835
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	72, 436, 692
AoxI	GGCC	2 cut(s)	30, 356
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	3 cut(s)	475, 626, 858
Asp718I	GGTACC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	920
AsuHPI	GGTGA	3 cut(s)	412, 760, 889
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	836
BccI	CCATC	5 cut(s)	356, 403, 538, 635, 821
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BciVI	GTATCC	1 cut(s)	282
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	212
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	2 cut(s)	584, 836
BfmI	CTRYAG	2 cut(s)	161, 387
BfoI	RGCGCY	1 cut(s)	921
BfrI	CTTAAG	1 cut(s)	737
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	825
BlsI	GCNGC	1 cut(s)	826
BmiI	GGNNCC	2 cut(s)	7, 811
BmsI	GCATC	2 cut(s)	511, 739
BpuEI	CTTGAG	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	849
BsaJI	CCNNGG	4 cut(s)	54, 253, 396, 636
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 214, 254, 533, 642, 806
Bse1I	ACTGG	2 cut(s)	66, 212
Bse3DI	GCAATG	1 cut(s)	653
Bse8I	GATNNNNATC	1 cut(s)	849
BseDI	CCNNGG	4 cut(s)	54, 253, 396, 636
BseGI	GGATG	4 cut(s)	418, 646, 847, 850
BseJI	GATNNNNATC	1 cut(s)	849
BseLI	CCNNNNNNNGG	6 cut(s)	28, 214, 254, 533, 642, 806
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	66, 212
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	836
Bsh1236I	CGCG	2 cut(s)	69, 507
BshFI	GGCC	2 cut(s)	32, 358
BshNI	GGYRCC	1 cut(s)	809
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	6 cut(s)	28, 214, 254, 533, 642, 806
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	32, 358
Bsp1286I	GDGCHC	3 cut(s)	555, 564, 593
Bsp143I	GATC	5 cut(s)	64, 429, 441, 607, 697
Bsp19I	CCATGG	2 cut(s)	253, 396
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	32, 358
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	2 cut(s)	69, 507
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	7, 811
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	72, 436, 692
BspT107I	GGYRCC	1 cut(s)	809
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	653
BsrI	ACTGG	2 cut(s)	66, 212
BssECI	CCNNGG	4 cut(s)	54, 253, 396, 636
BssMI	GATC	5 cut(s)	64, 429, 441, 607, 697
BssT1I	CCWWGG	3 cut(s)	253, 396, 636
Bst4CI	ACNGT	3 cut(s)	270, 388, 540
BstAFI	CTTAAG	1 cut(s)	737
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	3 cut(s)	54, 253, 396
BstF5I	GGATG	4 cut(s)	418, 646, 847, 850
BstFNI	CGCG	2 cut(s)	69, 507
BstH2I	RGCGCY	1 cut(s)	921
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	5 cut(s)	67, 432, 444, 610, 700
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	5 cut(s)	64, 429, 441, 607, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	559
BstSFI	CTRYAG	2 cut(s)	161, 387
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	2 cut(s)	69, 507
BstV1I	GCAGC	1 cut(s)	836
BstX2I	RGATCY	1 cut(s)	697
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	697
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	32, 358
BtgI	CCRYGG	3 cut(s)	54, 253, 396
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	4 cut(s)	418, 646, 847, 850
BtsIMutI	CAGTG	4 cut(s)	219, 342, 384, 573
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	920
Csp6I	GTAC	3 cut(s)	85, 541, 810
CviAII	CATG	4 cut(s)	254, 368, 397, 711
CviQI	GTAC	3 cut(s)	85, 541, 810
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	5 cut(s)	66, 431, 443, 609, 699
DpnII	GATC	5 cut(s)	64, 429, 441, 607, 697
DraI	TTTAAA	1 cut(s)	334
DraIII	CACNNNGTG	1 cut(s)	748
EaeI	YGGCCR	2 cut(s)	30, 356
Eco130I	CCWWGG	3 cut(s)	253, 396, 636
Eco24I	GRGCYC	1 cut(s)	564
Eco57I	CTGAAG	2 cut(s)	440, 871
EcoRI	GAATTC	2 cut(s)	475, 858
EcoT14I	CCWWGG	3 cut(s)	253, 396, 636
EcoT22I	ATGCAT	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	3 cut(s)	253, 396, 636
FaeI	CATG	4 cut(s)	257, 371, 400, 714
FalI	AAGNNNNNCTT	2 cut(s)	884, 916
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	4 cut(s)	253, 367, 396, 710
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	1 cut(s)	825
FokI	GGATG	4 cut(s)	425, 653, 837, 854
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	825
FspBI	CTAG	2 cut(s)	584, 836
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	1 cut(s)	825
HaeII	RGCGCY	1 cut(s)	921
HaeIII	GGCC	2 cut(s)	32, 358
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	4 cut(s)	257, 371, 400, 714
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	5 cut(s)	11, 25, 311, 326, 926
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	3 cut(s)	412, 760, 889
Hpy166II	GTNNAC	1 cut(s)	897
Hpy188I	TCNGA	2 cut(s)	10, 931
Hpy188III	TCNNGA	3 cut(s)	368, 534, 759
Hpy8I	GTNNAC	1 cut(s)	897
HpyAV	CCTTC	6 cut(s)	190, 218, 295, 415, 905, 910
HpyCH4III	ACNGT	3 cut(s)	270, 388, 540
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	5 cut(s)	96, 163, 524, 730, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	559
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	4 cut(s)	257, 371, 400, 714
HspAI	GCGC	1 cut(s)	918
KpnI	GGTACC	1 cut(s)	813
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	64, 429, 441, 607, 697
LmnI	GCTCC	2 cut(s)	785, 832
Lsp1109I	GCAGC	1 cut(s)	836
LweI	GCATC	2 cut(s)	511, 739
MaeI	CTAG	2 cut(s)	584, 836
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	2 cut(s)	380, 391
MalI	GATC	5 cut(s)	66, 431, 443, 609, 699
MboI	GATC	5 cut(s)	64, 429, 441, 607, 697
MboII	GAAGA	4 cut(s)	320, 415, 418, 735
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	3 cut(s)	555, 564, 593
MlsI	TGGCCA	1 cut(s)	358
MluCI	AATT	7 cut(s)	49, 88, 121, 475, 626, 858, 957
MluI	ACGCGT	1 cut(s)	505
MluNI	TGGCCA	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	335, 920
MmeI	TCCRAC	2 cut(s)	342, 673
MnlI	CCTC	9 cut(s)	93, 103, 325, 537, 579, 685, 692, 711, 799
Mox20I	TGGCCA	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	358
MseI	TTAA	5 cut(s)	167, 204, 237, 333, 738
Msp20I	TGGCCA	1 cut(s)	358
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	732
MvnI	CGCG	2 cut(s)	69, 507
MwoI	GCNNNNNNNGC	1 cut(s)	559
NcoI	CCATGG	2 cut(s)	253, 396
NdeII	GATC	5 cut(s)	64, 429, 441, 607, 697
NlaIII	CATG	4 cut(s)	257, 371, 400, 714
NlaIV	GGNNCC	2 cut(s)	7, 811
NsiI	ATGCAT	1 cut(s)	732
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	1 cut(s)	732
PfeI	GAWTC	3 cut(s)	11, 25, 311
PkrI	GCNGC	1 cut(s)	826
PleI	GAGTC	2 cut(s)	334, 920
PpsI	GAGTC	2 cut(s)	334, 920
PspN4I	GGNNCC	2 cut(s)	7, 811
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	3 cut(s)	86, 542, 811
RsaNI	GTAC	3 cut(s)	85, 541, 810
SaqAI	TTAA	5 cut(s)	167, 204, 237, 333, 738
SatI	GCNGC	1 cut(s)	825
Sau3AI	GATC	5 cut(s)	64, 429, 441, 607, 697
SchI	GAGTC	2 cut(s)	335, 920
SduI	GDGCHC	3 cut(s)	555, 564, 593
SfaNI	GCATC	2 cut(s)	511, 739
SfcI	CTRYAG	2 cut(s)	161, 387
SmlI	CTYRAG	2 cut(s)	737, 863
SmoI	CTYRAG	2 cut(s)	737, 863
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	7 cut(s)	49, 88, 121, 475, 626, 858, 957
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	2 cut(s)	584, 836
StyI	CCWWGG	3 cut(s)	253, 396, 636
TaaI	ACNGT	3 cut(s)	270, 388, 540
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	2 cut(s)	432, 479
TasI	AATT	7 cut(s)	49, 88, 121, 475, 626, 858, 957
TfiI	GAWTC	3 cut(s)	11, 25, 311
Tru1I	TTAA	5 cut(s)	167, 204, 237, 333, 738
Tru9I	TTAA	5 cut(s)	167, 204, 237, 333, 738
TscAI	CASTG	4 cut(s)	219, 349, 391, 580
TseI	GCWGC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	527, 861
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	219, 349, 391, 580
Vha464I	CTTAAG	1 cut(s)	737
XapI	RAATTY	3 cut(s)	475, 626, 858
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	2 cut(s)	584, 836
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.