Rroxscaffold_4G00307270

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002088
Physical Location & Seq
Reverse (-)
28422614 .. 28425105
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307270.1

Sequence Viewer

Length: 372 bp
ATGCTGTGGCCCGGTAACGAGAGATTAAAGCATGAAAAAGATTTTGCTGGCACATTTTTCTTACAAGAAGTAGAAAGCAATATTGGTGCTGGCATTCATGACACTCATTCTTGCAAAGCTTCAATGGATCAATCAAAAGACGATGCAGAACCTCTAGTTGAAGGTACTGTGAAGGAAGGTTTTGATGAAGTAAGAGCAGGAGATGGTGAACAGTTTGTTTTGTCAGAGAAGGTTGATGCATTTGGTGAAGCACCCACACATTGCTTGGACTCCGAAAATACAAAGAATGTTATAGCCTTGGATGAAGACCAGAGTATGAAGAAGGCAGAGACAAAGACTGGCTTCCGATCAGCTGGATGCCCTTCTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 map04110 map04111 map04113
Pfam Domains
Protein Families
Pkinase

Protein Analysis

123

Amino Acids

13.42

Weight (kDa)

4.61

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 135
AfaI GTAC 1 cut(s) 166
AgsI TTSAA 2 cut(s) 123, 161
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AluBI AGCT 2 cut(s) 119, 353
AluI AGCT 2 cut(s) 119, 353
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 135
AoxI GGCC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 218, 257
BbsI GAAGAC 1 cut(s) 312
BccI CCATC 1 cut(s) 197
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 3 cut(s) 133, 226, 347
BpiI GAAGAC 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 307, 362
BseMI GCAATG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 343
BshFI GGCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 127, 347
BspANI GGCC 1 cut(s) 10
BspHI TCATGA 1 cut(s) 97
BspPI GGATC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 127, 347
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 169, 213
BstC8I GCNNGC 2 cut(s) 49, 91
BstF5I GGATG 2 cut(s) 307, 362
BstKTI GATC 2 cut(s) 130, 350
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 2 cut(s) 127, 347
BstSCI CCNGG 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 2 cut(s) 307, 362
Cac8I GCNNGC 2 cut(s) 49, 91
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 165
CviAII CATG 2 cut(s) 32, 98
CviJI RGCY 5 cut(s) 10, 119, 296, 342, 353
CviKI_1 RGCY 5 cut(s) 10, 119, 296, 342, 353
CviQI GTAC 1 cut(s) 165
DpnI GATC 2 cut(s) 129, 349
DpnII GATC 2 cut(s) 127, 347
Eco130I CCWWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 35, 101
FaiI YATR 4 cut(s) 33, 99, 293, 317
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 2 cut(s) 31, 97
FokI GGATG 1 cut(s) 314
FspBI CTAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 35, 101
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 218, 257
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 3 cut(s) 226, 274, 347
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 6 cut(s) 155, 166, 170, 223, 316, 372
HpyCH4III ACNGT 2 cut(s) 169, 213
HpyCH4V TGCA 3 cut(s) 114, 146, 239
Hsp92II CATG 2 cut(s) 35, 101
Kzo9I GATC 2 cut(s) 127, 347
LpnPI CCDG 7 cut(s) 25, 33, 75, 183, 323, 324, 339
LweI GCATC 3 cut(s) 133, 226, 347
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 129, 349
MboI GATC 2 cut(s) 127, 347
MboII GAAGA 2 cut(s) 317, 331
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 93
NciI CCSGG 1 cut(s) 12
NdeII GATC 2 cut(s) 127, 347
NlaIII CATG 2 cut(s) 35, 101
NsiI ATGCAT 1 cut(s) 241
PagI TCATGA 1 cut(s) 97
PctI GAATGC 1 cut(s) 93
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 2 cut(s) 127, 347
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 12
SetI ASST 6 cut(s) 121, 154, 166, 181, 234, 355
SfaNI GCATC 3 cut(s) 133, 226, 347
SspI AATATT 1 cut(s) 82
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 2 cut(s) 169, 213
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TspDTI ATGAA 5 cut(s) 48, 86, 201, 318, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XspI CTAG 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.