Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001072.1

Orthogroup ID

OG0002088

Physical Location & Seq

Genomic Coordinates Forward (+)

79061 .. 85423

Gene Structure 6363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001072.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3495 bp

atggcaactaacccactcgactcagccctcaccgcctcaaccatctccgactccgacaaggcttggcacctcctcgccctcctcttatctctcggccgccgcaccccgccctctgagctcgccgcccgatgcacggcgttcccagcaactactcattcggtccgacgcctttgctccgtcgccaattcgccgctctccttgtccgacgatctatacgtcacgccgtctctactcgccgtaaccgctctggctgagtccgtttcatgttccggcgccgccggcggtgcactgagaacctactcagggaagaggaagcgcgtcgttttggattgcggatttgtgccctcggccaaacggagattgattgtggattttgaaaatgtatatgaagagaaaggagcgcggaaatcagtcgtaatttctcctccaaagatacattttcatatgactgactacctcagcagaaaaataaatatgctaccaagtgatgtggctgtggggttgaataaaccgatgttcagttctccattatttattgaatatagtgctgagccatccagtggtggagtgaagaacattgataatgtagaagatcaaatggagaccgatctaactctgcaaaggaacgttaacaaaagagtattggcctgtgtagatgatttagagccaactgttccaacattgtcagaagatttagtactttatgaagaagctaacatgcacgagatagatagcttggccaaatcttacctagagaaaagtaaagaaagcattttgtcacctgtgctggatgagaatgttagcggtagttgtaaagttgcaaattctacaatccttgaagatgaaagaattgtggcagattcggaggaagaattgttagtagatccaggcaactgcaatggtgaaagagaaaacatgtcccacccacaaactgctgtcgccgataagctgcctggaatcgactccagaagattagaagaggaggactatgaagatacaatacctttgagaaaaaggcttataagaatacttgagacccgagtcaaacttccagttactgatttctctgttgccgaaaagcaattgttgcagccatttgaaaaggtgtccaacgatttagtactctatgaaagagctaacatgcatgagaaaaccaaagaaagcataatctcaccagctttggatgagagtgttagtggtagtcgtaaagttacaaacgctacaattcttgaagatgtaagaactgtgggaaatcatgaggaagaactgttcatagatcctggcaaccctaatggagagactgagaatctatcacagccatttgctgctgtttctgataagcagcctgcaaccggctccagaagcttaaaagagcaggattttgaagatacgacaccattgcataaagagcgacatgagaaccaaaccatttgtgtggccactgatctctcctctcctaaggtgtccaatgatttagtacaatatgaaggagctgacatgcatgagatagatatccagggaaactcttaccaagagaaaatcaaagaaagcacaatgccagctttggatgagagtgttagtggtaactgtaaaggtacaaatgctacaatccttgaagataaacgaattgtgggagatgcagaggaaggattgttagtaaatcctggcaaccctattggagaaacagaaattctataccagccatatactaatgtttctgataagctggctggaattgacttcagaagattgaatgaggatgactatgaagatacaacacctgtgaataaaagtcttatgacaagaaatgagacccaaaccacctgtcctgctactgaattctatgttcctcaaaagcagttgttgaagtcctctgcaacaatgaaggccatggacaaggataaaatatcttcaagattgcaatctctatatagttgtagtctagagcaagatcagactgttgccactcccaaagtgaacctccaccataaaatggatcagaagacaaatagcatggatcagccagagaaaaaagaacttccaaattttgattcttatatggtagaagaagaagaaggttcaggtggttatggcactgtttacagggcgaggagtccacatgctaatgctcataagagccatgttaacaatgagttgagaatgctggaaaggtttggggggaagaactttgtgatcaaatatgaaggctgtatcaagaatggaaattcaagttgctttgtattacagcatgttgagcatgataggcctgaggttttaaagaaagagatagatgtttgtgagctccggtggtatggatattgcttgtttagagcacttgcaagccttcataagcagggaatcgtacatagagatgttaaacccggcaatttccttttctctcgtaaggccaacaagggttaccttattgatttcaatctatccatggacttgcatcagaagtatggaaataatagtaagtcaagagggggatttgatgtaagcagcaatgatgagaagcttatgactgcaaaaaatttacctccaatcacacttaggaagttgccaagtggtaaatctttactaacagccaatggagagacctcaaaaggtttgaaatccacttttgatatgaaggatctgaaaaagatggctttcagccaaatgaaggccaataatgattcgggtagtaggaaggtaatcaaaagtcagtgtgcagatggctcaggcataacgtcagtaaaggatgttacaagtaccagaactccttcggcagaaaggatgagagaacctttgccatgccaaggaaggaaagaactgatcagcctagtacaggaagcaagggagagtccaaatcatgaggcatcaagtatttcagctcttatgagaaagagggttcctgcccctcccgtaaatgttgatggcaagcttttccatgtcactccgatggctatgcactcaactaccagtggtattggtggtccatgcttgataagaagcagaggtcttggaaaacataaagaaggcccttgtgctggaacaaaaggcttcagggctccagaggttctcttcagatctccacatcaaggccccaaaattgatatctggtctgccggagtcacgctactctacttgttgattggcagaacacccttccttggtgaacctgaactgaacatcaaggatatagcaaagctgagaggcagtgaagatttatgggaagttgccaagctacacgaccgtgaatcctcatttccagtggagctctatagtacagattgtttgccctctattaaactaaaggagtggtgtaaaatgaacacaaagagaccggacttctttgagcaaatcccaagaccccttttcgaccttgtggacaaatgcttgattgtgaaccctagggttagattgagtgcagaggaagcgcttaaacatgagtttttcgctccatgccatgaagaactgagaaagcacaggcttcaaaggcaggtattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006281 GO:0006302 GO:0006310 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0006950 GO:0006974 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0008360 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010389 GO:0010556 GO:0010557 GO:0010564 GO:0010571 GO:0010604 GO:0010948 GO:0010971 GO:0015630 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0022604 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045171 GO:0045740 GO:0045786 GO:0045787 GO:0045931 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070316 GO:0070317 GO:0071704 GO:0072686 GO:0080090 GO:0090068 GO:0090304 GO:0090329 GO:0098657 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

Pkinase

Protein Analysis

1164

Amino Acids

129.62

Weight (kDa)

6.04

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16970
fragaria_vesca	FvH4_5g20210 FvH4_5g20210 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370
malus_domestica	MD04G1051700.v1.1 MD06G1048400.v1.1 MD07G1109800.v1.1
prunus_persica	Prupe.5G058600_v2.0.a1 Prupe.5G058600_v2.0.a1
pyrus_communis	pycom04g04540 pycom06g04150 pycom07g09450 pycom07g09460
rosa_chinensis	RchiOBHm_Chr1g0348071 RchiOBHm_Chr7g0205281
rosa_laevigata	RLG00000003391 RLG00000028693
rosa_multiflora	Rmu_co8277205.1_g000001 Rmu_sc0000253.1_g000018 Rmu_sc0001072.1_g000017 Rmu_sc0002523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252510 Rroxscaffold_4G00307260 Rroxscaffold_4G00307270
rosa_rugosa	Rorug01G0192000 Rorug01G0192100 Rorug07G0089300 Rorug07G0089400.1
rosa_samantha	Rh1AG209800 Rh1BG175400 Rh1CG194200 Rh1DG205200 Rh7AG219800 Rh7BG215900 Rh7CG232700 Rh7DG226800
rosa_wichuraiana	Rw1G017500 Rw7G019010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
Acc36I	ACCTGC	1 cut(s)	3475
AccB1I	GGYRCC	2 cut(s)	66, 272
AccB7I	CCANNNNNTGG	2 cut(s)	560, 1993
AccBSI	CCGCTC	2 cut(s)	193, 245
AccII	CGCG	2 cut(s)	318, 403
AclI	AACGTT	1 cut(s)	627
AclWI	GGATC	5 cut(s)	878, 1271, 2004, 2025, 2643
AcoI	YGGCCR	4 cut(s)	94, 348, 738, 1437
AcsI	RAATTY	6 cut(s)	823, 1689, 1838, 2044, 2224, 2533
AcuI	CTGAAG	3 cut(s)	1726, 3031, 3052
AcyI	GRCGYC	2 cut(s)	166, 273
AfaI	GTAC	8 cut(s)	699, 1122, 1479, 1597, 2364, 2755, 2829, 3271
AfeI	AGCGCT	1 cut(s)	3423
AflIII	ACRYGT	1 cut(s)	915
AjnI	CCWGG	5 cut(s)	886, 952, 1279, 1515, 1663
AjuI	GAANNNNNNNTTGG	2 cut(s)	2035, 2067
AleI	CACNNNNGTG	1 cut(s)	3237
AloI	GAACNNNNNNTCC	2 cut(s)	1253, 1285
Alw21I	GWGCWC	5 cut(s)	120, 289, 2304, 2335, 3264
Alw26I	GTCTC	7 cut(s)	231, 596, 1028, 1292, 1805, 2591, 3319
Alw44I	GTGCAC	1 cut(s)	285
AlwI	GGATC	5 cut(s)	878, 1271, 2004, 2025, 2643
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	1 cut(s)	1038
Aor51HI	AGCGCT	1 cut(s)	3423
ApaLI	GTGCAC	1 cut(s)	285
ApeKI	GCWGC	5 cut(s)	949, 1090, 1325, 1342, 2502
ApoI	RAATTY	6 cut(s)	823, 1689, 1838, 2044, 2224, 2533
ArsI	GACNNNNNNTTYG	2 cut(s)	1810, 1842
Asp700I	GAANNNNTTC	1 cut(s)	2764
AspA2I	CCTAGG	1 cut(s)	3395
AspLEI	GCGC	4 cut(s)	275, 318, 403, 3424
AspS9I	GGNCC	4 cut(s)	160, 2978, 3023, 3086
AsuC2I	CCSGG	1 cut(s)	2382
AsuHPI	GGTGA	5 cut(s)	22, 771, 914, 1164, 3170
AvaI	CYCGRG	1 cut(s)	1038
AvaII	GGWCC	2 cut(s)	160, 2978
AvrII	CCTAGG	1 cut(s)	3395
AxyI	CCTNAGG	2 cut(s)	1458, 2268
BaeGI	GKGCMC	2 cut(s)	289, 345
BalI	TGGCCA	2 cut(s)	740, 1439
BanI	GGYRCC	2 cut(s)	66, 272
BanII	GRGCYC	4 cut(s)	120, 2304, 3055, 3264
BarI	GAAGNNNNNNTAC	4 cut(s)	681, 713, 984, 1016
BauI	CACGAG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	2009
Bbv12I	GWGCWC	5 cut(s)	120, 289, 2304, 2335, 3264
BbvCI	CCTCAGC	1 cut(s)	458
BbvI	GCAGC	5 cut(s)	936, 1102, 1312, 1354, 2514
BccI	CCATC	6 cut(s)	50, 562, 2641, 2711, 2912, 2938
BceAI	ACGGC	3 cut(s)	150, 208, 221
BcgI	CGANNNNNNTGC	6 cut(s)	153, 187, 1381, 1415, 2932, 2966
BciT130I	CCWGG	5 cut(s)	888, 954, 1281, 1517, 1665
BclI	TGATCA	2 cut(s)	2193, 2817
BcnI	CCSGG	1 cut(s)	2382
BcoDI	GTCTC	7 cut(s)	231, 596, 1028, 1292, 1805, 2591, 3319
BfaI	CTAG	4 cut(s)	752, 1943, 2825, 3396
BfmI	CTRYAG	1 cut(s)	3265
BfoI	RGCGCY	2 cut(s)	276, 3425
BfuAI	ACCTGC	1 cut(s)	3475
BglII	AGATCT	1 cut(s)	3071
BlnI	CCTAGG	1 cut(s)	3395
BlpI	GCTNAGC	1 cut(s)	549
BmcAI	AGTACT	2 cut(s)	699, 1122
Bme1390I	CCNGG	6 cut(s)	888, 954, 1281, 1517, 1665, 2382
Bme18I	GGWCC	2 cut(s)	160, 2978
BmeT110I	CYCGRG	1 cut(s)	1038
BmgT120I	GGNCC	4 cut(s)	160, 2978, 3023, 3086
BmiI	GGNNCC	6 cut(s)	68, 274, 1357, 2895, 3054, 3088
BmrFI	CCNGG	6 cut(s)	888, 954, 1281, 1517, 1665, 2382
BmsI	GCATC	4 cut(s)	119, 1627, 2461, 2870
BoxI	GACNNNNGTC	1 cut(s)	1040
BpiI	GAAGAC	1 cut(s)	2009
BpmI	CTGGAG	3 cut(s)	949, 1342, 3039
Bpu10I	CCTNAGC	2 cut(s)	458, 2722
Bpu1102I	GCTNAGC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	1052
BpuMI	CCSGG	1 cut(s)	2382
BsaBI	GATNNNNATC	3 cut(s)	1511, 1921, 2433
BsaHI	GRCGYC	2 cut(s)	166, 273
BsaI	GGTCTC	5 cut(s)	596, 1028, 1805, 2591, 3319
BsaJI	CCNNGG	7 cut(s)	345, 1516, 1890, 2442, 2800, 3154, 3395
BsaWI	WCCGGW	2 cut(s)	2304, 3328
BsaXI	ACNNNNNCTCC	2 cut(s)	2746, 2776
Bse118I	RCCGGY	2 cut(s)	278, 1352
Bse1I	ACTGG	4 cut(s)	558, 1052, 2964, 3254
Bse21I	CCTNAGG	2 cut(s)	1458, 2268
Bse3DI	GCAATG	3 cut(s)	904, 1397, 2512
Bse8I	GATNNNNATC	3 cut(s)	1511, 1921, 2433
BseBI	CCWGG	5 cut(s)	888, 954, 1281, 1517, 1665
BseDI	CCNNGG	7 cut(s)	345, 1516, 1890, 2442, 2800, 3154, 3395
BseGI	GGATG	7 cut(s)	554, 796, 1189, 1573, 1765, 2749, 2784
BseJI	GATNNNNATC	3 cut(s)	1511, 1921, 2433
BseMI	GCAATG	3 cut(s)	904, 1397, 2512
BseNI	ACTGG	4 cut(s)	558, 1052, 2964, 3254
BseRI	GAGGAG	6 cut(s)	62, 71, 414, 995, 1441, 2125
BseSI	GKGCMC	2 cut(s)	289, 345
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	5 cut(s)	936, 1102, 1312, 1354, 2514
BseYI	CCCAGC	1 cut(s)	142
BsgI	GTGCAG	2 cut(s)	2733, 3432
Bsh1236I	CGCG	2 cut(s)	318, 403
Bsh1285I	CGRYCG	2 cut(s)	97, 3238
BshNI	GGYRCC	2 cut(s)	66, 272
BsiEI	CGRYCG	2 cut(s)	97, 3238
BsiHKAI	GWGCWC	5 cut(s)	120, 289, 2304, 2335, 3264
BsiHKCI	CYCGRG	1 cut(s)	1038
BsiSI	CCGG	7 cut(s)	270, 279, 1353, 2305, 2382, 3111, 3329
BslFI	GGGAC	1 cut(s)	904
BsmAI	GTCTC	7 cut(s)	231, 596, 1028, 1292, 1805, 2591, 3319
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	1 cut(s)	2166
Bso31I	GGTCTC	5 cut(s)	596, 1028, 1805, 2591, 3319
BsoBI	CYCGRG	1 cut(s)	1038
Bsp1286I	GDGCHC	7 cut(s)	120, 289, 345, 2304, 2335, 3055, 3264
Bsp1720I	GCTNAGC	1 cut(s)	549
Bsp19I	CCATGG	2 cut(s)	1890, 2442
BspFNI	CGCG	2 cut(s)	318, 403
BspHI	TCATGA	2 cut(s)	1255, 2854
BspLI	GGNNCC	6 cut(s)	68, 274, 1357, 2895, 3054, 3088
BspMI	ACCTGC	1 cut(s)	3475
BspPI	GGATC	5 cut(s)	878, 1271, 2004, 2025, 2643
BspT107I	GGYRCC	2 cut(s)	66, 272
BspTNI	GGTCTC	5 cut(s)	596, 1028, 1805, 2591, 3319
BsrBI	CCGCTC	2 cut(s)	193, 245
BsrDI	GCAATG	3 cut(s)	904, 1397, 2512
BsrFI	RCCGGY	2 cut(s)	278, 1352
BsrI	ACTGG	4 cut(s)	558, 1052, 2964, 3254
BssAI	RCCGGY	2 cut(s)	278, 1352
BssECI	CCNNGG	7 cut(s)	345, 1516, 1890, 2442, 2800, 3154, 3395
BssNI	GRCGYC	2 cut(s)	166, 273
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	5 cut(s)	1890, 2442, 2800, 3154, 3395
Bst2BI	CACGAG	1 cut(s)	722
Bst2UI	CCWGG	5 cut(s)	888, 954, 1281, 1517, 1665
Bst4CI	ACNGT	7 cut(s)	673, 1246, 1269, 1589, 1960, 2098, 3239
Bst6I	CTCTTC	4 cut(s)	302, 384, 972, 3071
BstACI	GRCGYC	2 cut(s)	166, 273
BstAPI	GCANNNNNTGC	1 cut(s)	1087
BstC8I	GCNNGC	7 cut(s)	120, 280, 1347, 1560, 1728, 2341, 2924
BstDSI	CCRYGG	2 cut(s)	1890, 2442
BstEII	GGTNACC	1 cut(s)	2417
BstENI	CCTNNNNNAGG	1 cut(s)	2828
BstF5I	GGATG	7 cut(s)	554, 796, 1189, 1573, 1765, 2749, 2784
BstFNI	CGCG	2 cut(s)	318, 403
BstH2I	RGCGCY	2 cut(s)	276, 3425
BstHHI	GCGC	4 cut(s)	275, 318, 403, 3424
BstMAI	GTCTC	7 cut(s)	231, 596, 1028, 1292, 1805, 2591, 3319
BstMCI	CGRYCG	2 cut(s)	97, 3238
BstNI	CCWGG	5 cut(s)	888, 954, 1281, 1517, 1665
BstNSI	RCATGY	6 cut(s)	721, 919, 1144, 1501, 2123, 2252
BstPAI	GACNNNNGTC	1 cut(s)	1040
BstPI	GGTNACC	1 cut(s)	2417
BstSCI	CCNGG	6 cut(s)	886, 952, 1279, 1515, 1663, 2380
BstSFI	CTRYAG	1 cut(s)	3265
BstSLI	GKGCMC	2 cut(s)	289, 345
BstUI	CGCG	2 cut(s)	318, 403
BstV1I	GCAGC	5 cut(s)	936, 1102, 1312, 1354, 2514
BstV2I	GAAGAC	1 cut(s)	2009
BstX2I	RGATCY	4 cut(s)	883, 1276, 2635, 3071
BstXI	CCANNNNNNTGG	1 cut(s)	1435
BstYI	RGATCY	4 cut(s)	883, 1276, 2635, 3071
BstZI	CGGCCG	1 cut(s)	94
Bsu36I	CCTNAGG	2 cut(s)	1458, 2268
BtgI	CCRYGG	2 cut(s)	1890, 2442
BtsCI	GGATG	7 cut(s)	554, 796, 1189, 1573, 1765, 2749, 2784
BtsI	GCAGTG	1 cut(s)	3208
BtsIMutI	CAGTG	8 cut(s)	287, 565, 1440, 2094, 2714, 2971, 3208, 3261
BveI	ACCTGC	1 cut(s)	3475
Cac8I	GCNNGC	7 cut(s)	120, 280, 1347, 1560, 1728, 2341, 2924
CaiI	CAGNNNCTG	1 cut(s)	1058
CciI	TCATGA	2 cut(s)	1255, 2854
CfoI	GCGC	4 cut(s)	275, 318, 403, 3424
Cfr10I	RCCGGY	2 cut(s)	278, 1352
Cfr13I	GGNCC	4 cut(s)	160, 2978, 3023, 3086
CpoI	CGGWCCG	1 cut(s)	160
CseI	GACGC	2 cut(s)	174, 307
Csp6I	GTAC	8 cut(s)	698, 1121, 1478, 1596, 2363, 2754, 2828, 3270
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CspI	CGGWCCG	1 cut(s)	160
CviQI	GTAC	8 cut(s)	698, 1121, 1478, 1596, 2363, 2754, 2828, 3270
DinI	GGCGCC	1 cut(s)	274
DraI	TTTAAA	1 cut(s)	2277
EaeI	YGGCCR	4 cut(s)	94, 348, 738, 1437
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	4 cut(s)	302, 384, 972, 3071
EarI	CTCTTC	4 cut(s)	302, 384, 972, 3071
Ecl136II	GAGCTC	3 cut(s)	118, 2302, 3262
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	5 cut(s)	1890, 2442, 2800, 3154, 3395
Eco147I	AGGCCT	1 cut(s)	2266
Eco24I	GRGCYC	4 cut(s)	120, 2304, 3055, 3264
Eco31I	GGTCTC	5 cut(s)	596, 1028, 1805, 2591, 3319
Eco32I	GATATC	2 cut(s)	1513, 3100
Eco47I	GGWCC	2 cut(s)	160, 2978
Eco47III	AGCGCT	1 cut(s)	3423
Eco52I	CGGCCG	1 cut(s)	94
Eco53kI	GAGCTC	3 cut(s)	118, 2302, 3262
Eco57I	CTGAAG	3 cut(s)	1726, 3031, 3052
Eco81I	CCTNAGG	2 cut(s)	1458, 2268
Eco88I	CYCGRG	1 cut(s)	1038
Eco91I	GGTNACC	1 cut(s)	2417
EcoICRI	GAGCTC	3 cut(s)	118, 2302, 3262
EcoNI	CCTNNNNNAGG	1 cut(s)	2828
EcoO109I	RGGNCCY	2 cut(s)	3023, 3086
EcoO65I	GGTNACC	1 cut(s)	2417
EcoRI	GAATTC	1 cut(s)	1838
EcoRII	CCWGG	5 cut(s)	886, 952, 1279, 1515, 1663
EcoRV	GATATC	2 cut(s)	1513, 3100
EcoT14I	CCWWGG	5 cut(s)	1890, 2442, 2800, 3154, 3395
EcoT22I	ATGCAT	2 cut(s)	1146, 1503
EcoT38I	GRGCYC	4 cut(s)	120, 2304, 3055, 3264
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	5 cut(s)	1890, 2442, 2800, 3154, 3395
Esp3I	CGTCTC	1 cut(s)	231
FaqI	GGGAC	1 cut(s)	904
FauI	CCCGC	1 cut(s)	114
FauNDI	CATATG	1 cut(s)	444
FbaI	TGATCA	2 cut(s)	2193, 2817
FokI	GGATG	7 cut(s)	541, 803, 1196, 1580, 1772, 2756, 2791
FriOI	GRGCYC	4 cut(s)	120, 2304, 3055, 3264
FspBI	CTAG	4 cut(s)	752, 1943, 2825, 3396
GlaI	GCGC	4 cut(s)	274, 317, 402, 3423
GsaI	CCCAGC	1 cut(s)	146
GsuI	CTGGAG	3 cut(s)	949, 1342, 3039
HaeII	RGCGCY	2 cut(s)	276, 3425
HapII	CCGG	7 cut(s)	270, 279, 1353, 2305, 2382, 3111, 3329
HgaI	GACGC	2 cut(s)	174, 307
HhaI	GCGC	4 cut(s)	275, 318, 403, 3424
Hin1I	GRCGYC	2 cut(s)	166, 273
Hin6I	GCGC	4 cut(s)	273, 316, 401, 3422
HinP1I	GCGC	4 cut(s)	273, 316, 401, 3422
HincII	GTYRAC	2 cut(s)	631, 2146
HindII	GTYRAC	2 cut(s)	631, 2146
HindIII	AAGCTT	3 cut(s)	1363, 2516, 2924
HpaI	GTTAAC	2 cut(s)	631, 2146
HpaII	CCGG	7 cut(s)	270, 279, 1353, 2305, 2382, 3111, 3329
HphI	GGTGA	5 cut(s)	22, 771, 914, 1164, 3170
Hpy166II	GTNNAC	9 cut(s)	287, 631, 1978, 2101, 2117, 2146, 3161, 3373, 3391
Hpy8I	GTNNAC	9 cut(s)	287, 631, 1978, 2101, 2117, 2146, 3161, 3373, 3391
Hpy99I	CGWCG	4 cut(s)	168, 182, 209, 323
HpyCH4III	ACNGT	7 cut(s)	673, 1246, 1269, 1589, 1960, 2098, 3239
HpyCH4IV	ACGT	3 cut(s)	216, 627, 2732
HpySE526I	ACGT	3 cut(s)	216, 627, 2732
Hsp92I	GRCGYC	2 cut(s)	166, 273
HspAI	GCGC	4 cut(s)	273, 316, 401, 3422
KasI	GGCGCC	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Ksp22I	TGATCA	2 cut(s)	2193, 2817
KspAI	GTTAAC	2 cut(s)	631, 2146
LmnI	GCTCC	8 cut(s)	179, 398, 1361, 1490, 2307, 3058, 3259, 3448
Lsp1109I	GCAGC	5 cut(s)	936, 1102, 1312, 1354, 2514
LweI	GCATC	4 cut(s)	119, 1627, 2461, 2870
MaeI	CTAG	4 cut(s)	752, 1943, 2825, 3396
MaeII	ACGT	3 cut(s)	216, 627, 2732
MbiI	CCGCTC	2 cut(s)	193, 245
MfeI	CAATTG	1 cut(s)	1082
MflI	RGATCY	4 cut(s)	883, 1276, 2635, 3071
MhlI	GDGCHC	7 cut(s)	120, 289, 345, 2304, 2335, 3055, 3264
MlsI	TGGCCA	2 cut(s)	740, 1439
MluNI	TGGCCA	2 cut(s)	740, 1439
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	8 cut(s)	14, 44, 263, 956, 1050, 2122, 2854, 3123
MmeI	TCCRAC	6 cut(s)	72, 78, 187, 228, 701, 1134
Mox20I	TGGCCA	2 cut(s)	740, 1439
Mph1103I	ATGCAT	2 cut(s)	1146, 1503
MreI	CGCCGGCG	1 cut(s)	278
MroNI	GCCGGC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	2764
MscI	TGGCCA	2 cut(s)	740, 1439
MseI	TTAA	7 cut(s)	630, 1367, 2145, 2276, 2376, 3291, 3426
MslI	CAYNNNNRTG	5 cut(s)	1433, 2124, 2370, 2942, 3237
Msp20I	TGGCCA	2 cut(s)	740, 1439
MspI	CCGG	7 cut(s)	270, 279, 1353, 2305, 2382, 3111, 3329
MspR9I	CCNGG	6 cut(s)	888, 954, 1281, 1517, 1665, 2382
MunI	CAATTG	1 cut(s)	1082
Mva1269I	GAATGC	1 cut(s)	2166
MvaI	CCWGG	5 cut(s)	888, 954, 1281, 1517, 1665
MvnI	CGCG	2 cut(s)	318, 403
NaeI	GCCGGC	1 cut(s)	280
NarI	GGCGCC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	2382
NcoI	CCATGG	2 cut(s)	1890, 2442
NdeI	CATATG	1 cut(s)	444
NgoMIV	GCCGGC	1 cut(s)	278
NlaIV	GGNNCC	6 cut(s)	68, 274, 1357, 2895, 3054, 3088
NmeAIII	GCCGAG	2 cut(s)	72, 326
NmuCI	GTSAC	4 cut(s)	217, 777, 2935, 3115
NsiI	ATGCAT	2 cut(s)	1146, 1503
NspI	RCATGY	6 cut(s)	721, 919, 1144, 1501, 2123, 2252
OliI	CACNNNNGTG	1 cut(s)	3237
PagI	TCATGA	2 cut(s)	1255, 2854
PceI	AGGCCT	1 cut(s)	2266
PciI	ACATGT	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	1 cut(s)	2166
PdiI	GCCGGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	2764
PfeI	GAWTC	7 cut(s)	860, 957, 1306, 2051, 2358, 2678, 3242
PflMI	CCANNNNNTGG	2 cut(s)	560, 1993
PleI	GAGTC	8 cut(s)	14, 44, 262, 956, 1049, 2121, 2853, 3122
PluTI	GGCGCC	1 cut(s)	276
PpsI	GAGTC	8 cut(s)	14, 44, 262, 956, 1049, 2121, 2853, 3122
PscI	ACATGT	1 cut(s)	915
PshAI	GACNNNNGTC	1 cut(s)	1040
PsiI	TTATAA	1 cut(s)	1022
Psp124BI	GAGCTC	3 cut(s)	120, 2304, 3264
Psp1406I	AACGTT	1 cut(s)	627
Psp6I	CCWGG	5 cut(s)	886, 952, 1279, 1515, 1663
PspEI	GGTNACC	1 cut(s)	2417
PspFI	CCCAGC	1 cut(s)	142
PspGI	CCWGG	5 cut(s)	886, 952, 1279, 1515, 1663
PspN4I	GGNNCC	6 cut(s)	68, 274, 1357, 2895, 3054, 3088
PspPI	GGNCC	4 cut(s)	160, 2978, 3023, 3086
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	4 cut(s)	883, 1276, 2635, 3071
RsaI	GTAC	8 cut(s)	699, 1122, 1479, 1597, 2364, 2755, 2829, 3271
RsaNI	GTAC	8 cut(s)	698, 1121, 1478, 1596, 2363, 2754, 2828, 3270
RseI	CAYNNNNRTG	5 cut(s)	1433, 2124, 2370, 2942, 3237
Rsr2I	CGGWCCG	1 cut(s)	160
RsrII	CGGWCCG	1 cut(s)	160
SacI	GAGCTC	3 cut(s)	120, 2304, 3264
SaqAI	TTAA	7 cut(s)	630, 1367, 2145, 2276, 2376, 3291, 3426
Sau96I	GGNCC	4 cut(s)	160, 2978, 3023, 3086
ScaI	AGTACT	2 cut(s)	699, 1122
SchI	GAGTC	8 cut(s)	14, 44, 263, 956, 1050, 2122, 2854, 3123
ScrFI	CCNGG	6 cut(s)	888, 954, 1281, 1517, 1665, 2382
SduI	GDGCHC	7 cut(s)	120, 289, 345, 2304, 2335, 3055, 3264
SfaNI	GCATC	4 cut(s)	119, 1627, 2461, 2870
SfcI	CTRYAG	1 cut(s)	3265
SfoI	GGCGCC	1 cut(s)	274
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	160, 2978
SmiMI	CAYNNNNRTG	5 cut(s)	1433, 2124, 2370, 2942, 3237
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
SseBI	AGGCCT	1 cut(s)	2266
SspDI	GGCGCC	1 cut(s)	272
SspMI	CTAG	4 cut(s)	752, 1943, 2825, 3396
SstI	GAGCTC	3 cut(s)	120, 2304, 3264
StuI	AGGCCT	1 cut(s)	2266
StyD4I	CCNGG	6 cut(s)	886, 952, 1279, 1515, 1663, 2380
StyI	CCWWGG	5 cut(s)	1890, 2442, 2800, 3154, 3395
TaaI	ACNGT	7 cut(s)	673, 1246, 1269, 1589, 1960, 2098, 3239
TaiI	ACGT	3 cut(s)	219, 630, 2735
TaqI	TCGA	3 cut(s)	18, 960, 3363
TaqII	GACCGA	2 cut(s)	148, 620
TatI	WGTACW	5 cut(s)	697, 1120, 1477, 2827, 3269
TauI	GCSGC	5 cut(s)	99, 102, 125, 193, 278
TfiI	GAWTC	7 cut(s)	860, 957, 1306, 2051, 2358, 2678, 3242
Tru1I	TTAA	7 cut(s)	630, 1367, 2145, 2276, 2376, 3291, 3426
Tru9I	TTAA	7 cut(s)	630, 1367, 2145, 2276, 2376, 3291, 3426
TscAI	CASTG	8 cut(s)	294, 565, 1447, 2101, 2714, 2971, 3208, 3261
TseFI	GTSAC	4 cut(s)	217, 777, 2935, 3115
TseI	GCWGC	5 cut(s)	949, 1090, 1325, 1342, 2502
Tsp45I	GTSAC	4 cut(s)	217, 777, 2935, 3115
TspGWI	ACGGA	3 cut(s)	166, 247, 370
TspRI	CASTG	8 cut(s)	294, 565, 1447, 2101, 2714, 2971, 3208, 3261
Van91I	CCANNNNNTGG	2 cut(s)	560, 1993
VneI	GTGCAC	1 cut(s)	285
VpaK11BI	GGWCC	2 cut(s)	160, 2978
XagI	CCTNNNNNAGG	1 cut(s)	2828
XapI	RAATTY	6 cut(s)	823, 1689, 1838, 2044, 2224, 2533
XbaI	TCTAGA	1 cut(s)	1942
XceI	RCATGY	6 cut(s)	721, 919, 1144, 1501, 2123, 2252
XmaJI	CCTAGG	1 cut(s)	3395
XmnI	GAANNNNTTC	1 cut(s)	2764
XspI	CTAG	4 cut(s)	752, 1943, 2825, 3396
ZrmI	AGTACT	2 cut(s)	699, 1122
Zsp2I	ATGCAT	2 cut(s)	1146, 1503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.