Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8277205.1

Orthogroup ID

OG0002088

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 693

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8277205.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgcaggttctcttcagatctccacatcaaggccccaaaattgatatctggtctgccggagtcacgctactctacttgttgattggcagaacacccttccttggtgaacctgaactgaacatcaaggatatagcaaagctgagaggcagtgaagatttatgggaagttgccaagctacacgaccgtgaatcctcatttccagtggagctctatagtacagattgtttgccctctattaaactaaaggagtggtgtaaaatgaacacaaagagaccggacttctttgagcaaatcccaagaccccttttcgaccttgtggacaaatgcttgattgtgaaccctagggttagattgagtgcagaggaagcgcttaaacatgagtttttcgctccatgccatgaagaactgagaaagcacaggcttcaaaggcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006281 GO:0006302 GO:0006310 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0006950 GO:0006974 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0008360 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010389 GO:0010556 GO:0010557 GO:0010564 GO:0010571 GO:0010604 GO:0010948 GO:0010971 GO:0015630 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0022604 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045171 GO:0045740 GO:0045786 GO:0045787 GO:0045931 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070316 GO:0070317 GO:0071704 GO:0072686 GO:0080090 GO:0090068 GO:0090304 GO:0090329 GO:0098657 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

Pkinase

Protein Analysis

144

Amino Acids

16.89

Weight (kDa)

7.71

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16970
fragaria_vesca	FvH4_5g20210 FvH4_5g20210 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370 FvH4_7g10370
malus_domestica	MD04G1051700.v1.1 MD06G1048400.v1.1 MD07G1109800.v1.1
prunus_persica	Prupe.5G058600_v2.0.a1 Prupe.5G058600_v2.0.a1
pyrus_communis	pycom04g04540 pycom06g04150 pycom07g09450 pycom07g09460
rosa_chinensis	RchiOBHm_Chr1g0348071 RchiOBHm_Chr7g0205281
rosa_laevigata	RLG00000003391 RLG00000028693
rosa_multiflora	Rmu_co8277205.1_g000001 Rmu_sc0000253.1_g000018 Rmu_sc0001072.1_g000017 Rmu_sc0002523.1_g000002
rosa_roxburghii	Rroxscaffold_3G00252510 Rroxscaffold_4G00307260 Rroxscaffold_4G00307270
rosa_rugosa	Rorug01G0192000 Rorug01G0192100 Rorug07G0089300 Rorug07G0089400.1
rosa_samantha	Rh1AG209800 Rh1BG175400 Rh1CG194200 Rh1DG205200 Rh7AG219800 Rh7BG215900 Rh7CG232700 Rh7DG226800
rosa_wichuraiana	Rw1G017500 Rw7G019010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	217
AfeI	AGCGCT	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	29, 101
AgsI	TTSAA	1 cut(s)	425
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	139, 175, 208
AluI	AGCT	3 cut(s)	139, 175, 208
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	265
Aor51HI	AGCGCT	1 cut(s)	369
AoxI	GGCC	1 cut(s)	31
AspA2I	CCTAGG	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	116
AvrII	CCTAGG	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	371
BglII	AGATCT	1 cut(s)	17
BlnI	CCTAGG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	100, 341
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 101
Bse1I	ACTGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	100, 341
BseLI	CCNNNNNNNGG	2 cut(s)	29, 101
BseMII	CTCAG	2 cut(s)	131, 398
BseNI	ACTGG	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	57, 275
BslI	CCNNNNNNNGG	2 cut(s)	29, 101
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	132, 399
BspLI	GGNNCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	100, 341
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	100, 341
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	140, 407
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 427
BstSFI	CTRYAG	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	154, 207
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	377, 393, 398
CviJI	RGCY	5 cut(s)	33, 139, 175, 208, 421
CviKI_1	RGCY	5 cut(s)	33, 139, 175, 208, 421
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	140, 407
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	100, 341
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	369
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	100, 341
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	100, 341
FaeI	CATG	3 cut(s)	380, 396, 401
FaiI	YATR	6 cut(s)	131, 160, 213, 378, 394, 399
FatI	CATG	3 cut(s)	376, 392, 397
FriOI	GRGCYC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	2 cut(s)	57, 275
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	380, 396, 401
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	2 cut(s)	60, 188
HpaII	CCGG	2 cut(s)	57, 275
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	3 cut(s)	107, 319, 337
Hpy188I	TCNGA	1 cut(s)	17
Hpy8I	GTNNAC	3 cut(s)	107, 319, 337
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	4, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 427
HpyF3I	CTNAG	2 cut(s)	140, 407
Hsp92II	CATG	3 cut(s)	380, 396, 401
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	205, 394
LpnPI	CCDG	6 cut(s)	34, 70, 123, 213, 288, 403
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	4, 164, 413
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	137, 202, 241, 355
MseI	TTAA	2 cut(s)	237, 372
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	2 cut(s)	57, 275
MwoI	GCNNNNNNNGC	2 cut(s)	365, 427
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	3 cut(s)	380, 396, 401
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	237, 372
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	9, 112, 141, 177, 210, 315
SfcI	CTRYAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	39
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	210
StyI	CCWWGG	2 cut(s)	100, 341
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	309
TasI	AATT	1 cut(s)	39
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	237, 372
Tru9I	TTAA	2 cut(s)	237, 372
TscAI	CASTG	2 cut(s)	154, 207
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	275, 414
TspRI	CASTG	2 cut(s)	154, 207
XmaJI	CCTAGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.