Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

26269500 .. 26271596

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCGATAATCTCCGACATCCAGGAGGAACAGAGCTCGCCCGAGACGAAGCCTTCGCAGGCGGCGGCGGCGGCGTCATCGTCGTCATCGAAAGCGGCGACCTTTACCGCGAAGTTGGATCGCTCGAACCCTCTAGGGTTAGTGGAGAAGGTGTTGGAATTTCTTGCTAAGGAGAGCGATTTCTTCAAGAAGGAGACGGCGGAGAGGGAGGTCGCATCGATCGTGCGCGCCTTGAGGGAGAAGGAGAGGAAGAAGGAGGAGGAGGAGAGGAAGAAGAGGAGGCAGGCGGAGGAAGAGAGGAAGAAGAAGGCGGAGGCGGAGAAGAAGTCGAGCGAGGAGCCGAAGGCGGAAGTTAAAAAGGAGGAAACTGTGGAGGAGGGTAAGAAAGAGGAGGAGAGTGGCTTGAGAGTTCCGAACAAAGGGAATGGGCTGGATTTGGAGAAATACTCGTGGACGCAGAGCCTACAGGAGGTTAATGTTGTTATTCCCGTGCCGACTGGAACTAAATCTAGGTTCGTTGTGTGTGAGATCAAGAAGAATCGTCTGAAGTTTGGACTGAAGGGGCAGCCTCCGATCATCGATGGTGAACTTTTTCAAGCTATCAAGCCTGATGATTGTTACTGGAGCATAGAGGACCAGAGTGCCGTCTCAATTCTTCTGACCAAGCACAACCAAATGGAGTGGTGGAAAAGTCTGGTGAAAGGGGATCCTGAGATCGACACTCAAAAGGTTGAGCCTGAGCCCAGCAAACTGTCTGACCTGGATTCTGAAACGCGCCAGACTGTTGAAAAGATGATGTTTGACCAGAGACAGAAGCAGATGGGGCTCCCCACTAGCGAGGAGATGCAAAAGCAGGAAATCTTAAAGAAGTTCATGTCCGAGCATCCGGAGATGGACTTCTCAAGGGCCAAGATACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

307

Amino Acids

35.02

Weight (kDa)

5.7

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	147 - 222	6.8e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	110, 228, 775
AccIII	TCCGGA	1 cut(s)	886
AclWI	GGATC	3 cut(s)	126, 701, 714
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	2 cut(s)	566, 578
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	419, 469
AgsI	TTSAA	3 cut(s)	187, 596, 788
AjnI	CCWGG	2 cut(s)	21, 759
AluBI	AGCT	2 cut(s)	36, 599
AluI	AGCT	2 cut(s)	36, 599
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	4 cut(s)	38, 188, 652, 802
AlwI	GGATC	3 cut(s)	126, 701, 714
Ama87I	CYCGRG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	886
AoxI	GGCC	1 cut(s)	906
ApeKI	GCWGC	1 cut(s)	565
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	3 cut(s)	228, 230, 777
AspS9I	GGNCC	2 cut(s)	634, 906
AsuHPI	GGTGA	2 cut(s)	596, 709
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	634
BamHI	GGATCC	1 cut(s)	706
BanII	GRGCYC	3 cut(s)	38, 744, 828
BauI	CACGAG	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	3 cut(s)	575, 814, 886
BceAI	ACGGC	2 cut(s)	213, 629
BciT130I	CCWGG	2 cut(s)	23, 761
BcoDI	GTCTC	4 cut(s)	38, 188, 652, 802
BfaI	CTAG	3 cut(s)	134, 510, 834
BfmI	CTRYAG	1 cut(s)	464
BisI	GCNGC	6 cut(s)	63, 66, 69, 72, 96, 566
BlsI	GCNGC	6 cut(s)	64, 67, 70, 73, 97, 567
Bme1390I	CCNGG	2 cut(s)	23, 761
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	634, 906
BmiI	GGNNCC	3 cut(s)	339, 708, 827
BmrFI	CCNGG	2 cut(s)	23, 761
BmsI	GCATC	3 cut(s)	224, 834, 892
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	1 cut(s)	643
Bpu10I	CCTNAGC	2 cut(s)	168, 738
BpuEI	CTTGAG	3 cut(s)	253, 424, 886
Bsa29I	ATCGAT	2 cut(s)	218, 579
BsaHI	GRCGYC	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	886
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 469
Bse1I	ACTGG	2 cut(s)	502, 626
BseAI	TCCGGA	1 cut(s)	886
BseBI	CCWGG	2 cut(s)	23, 761
BseCI	ATCGAT	2 cut(s)	218, 579
BseGI	GGATG	2 cut(s)	18, 883
BseLI	CCNNNNNNNGG	2 cut(s)	419, 469
BseMII	CTCAG	2 cut(s)	702, 729
BseNI	ACTGG	2 cut(s)	502, 626
BsePI	GCGCGC	1 cut(s)	226
BseRI	GAGGAG	9 cut(s)	272, 275, 278, 292, 350, 389, 404, 407, 854
BseXI	GCAGC	1 cut(s)	577
BseYI	CCCAGC	1 cut(s)	743
Bsh1236I	CGCG	3 cut(s)	110, 228, 775
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	908
BshVI	ATCGAT	2 cut(s)	218, 579
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	887
BslI	CCNNNNNNNGG	2 cut(s)	419, 469
BsmAI	GTCTC	4 cut(s)	38, 188, 652, 802
BsmBI	CGTCTC	3 cut(s)	38, 188, 652
BsnI	GGCC	1 cut(s)	908
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	3 cut(s)	38, 744, 828
Bsp13I	TCCGGA	1 cut(s)	886
Bsp143I	GATC	6 cut(s)	118, 219, 528, 573, 706, 714
BspANI	GGCC	1 cut(s)	908
BspCNI	CTCAG	2 cut(s)	703, 730
BspDI	ATCGAT	2 cut(s)	218, 579
BspEI	TCCGGA	1 cut(s)	886
BspFNI	CGCG	3 cut(s)	110, 228, 775
BspLI	GGNNCC	3 cut(s)	339, 708, 827
BspPI	GGATC	3 cut(s)	126, 701, 714
BsrI	ACTGG	2 cut(s)	502, 626
BssHII	GCGCGC	1 cut(s)	226
BssMI	GATC	6 cut(s)	118, 219, 528, 573, 706, 714
BssNI	GRCGYC	1 cut(s)	74
BssSI	CACGAG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	2 cut(s)	23, 761
Bst4CI	ACNGT	4 cut(s)	370, 753, 784, 918
Bst6I	CTCTTC	2 cut(s)	269, 288
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	4 cut(s)	38, 60, 228, 285
BstDEI	CTNAG	3 cut(s)	168, 711, 738
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	2 cut(s)	18, 883
BstFNI	CGCG	3 cut(s)	110, 228, 775
BstHHI	GCGC	3 cut(s)	228, 230, 777
BstKTI	GATC	6 cut(s)	121, 222, 531, 576, 709, 717
BstMAI	GTCTC	4 cut(s)	38, 188, 652, 802
BstMBI	GATC	6 cut(s)	118, 219, 528, 573, 706, 714
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 71, 823
BstNI	CCWGG	2 cut(s)	23, 761
BstSCI	CCNGG	2 cut(s)	21, 759
BstSFI	CTRYAG	1 cut(s)	464
BstUI	CGCG	3 cut(s)	110, 228, 775
BstV1I	GCAGC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
Bsu15I	ATCGAT	2 cut(s)	218, 579
BsuRI	GGCC	1 cut(s)	908
BsuTUI	ATCGAT	2 cut(s)	218, 579
BtsCI	GGATG	2 cut(s)	18, 883
Cac8I	GCNNGC	4 cut(s)	38, 60, 228, 285
CfoI	GCGC	3 cut(s)	228, 230, 777
Cfr13I	GGNCC	2 cut(s)	634, 906
ClaI	ATCGAT	2 cut(s)	218, 579
CseI	GACGC	2 cut(s)	63, 463
CspCI	CAANNNNNGTGG	2 cut(s)	662, 697
CviAII	CATG	1 cut(s)	874
DdeI	CTNAG	3 cut(s)	168, 711, 738
DpnI	GATC	6 cut(s)	120, 221, 530, 575, 708, 716
DpnII	GATC	6 cut(s)	118, 219, 528, 573, 706, 714
Eam1104I	CTCTTC	2 cut(s)	269, 288
EarI	CTCTTC	2 cut(s)	269, 288
EciI	GGCGGA	5 cut(s)	215, 302, 326, 332, 362
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	3 cut(s)	38, 744, 828
Eco47I	GGWCC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	566, 578
Eco88I	CYCGRG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	21, 759
EcoT38I	GRGCYC	3 cut(s)	38, 744, 828
Esp3I	CGTCTC	3 cut(s)	38, 188, 652
FaeI	CATG	1 cut(s)	877
FaiI	YATR	2 cut(s)	629, 875
FatI	CATG	1 cut(s)	873
Fnu4HI	GCNGC	6 cut(s)	63, 66, 69, 72, 96, 566
FokI	GGATG	2 cut(s)	5, 870
FriOI	GRGCYC	3 cut(s)	38, 744, 828
Fsp4HI	GCNGC	6 cut(s)	63, 66, 69, 72, 96, 566
FspBI	CTAG	3 cut(s)	134, 510, 834
GlaI	GCGC	3 cut(s)	227, 229, 776
GluI	GCNGC	6 cut(s)	63, 66, 69, 72, 96, 566
GsaI	CCCAGC	1 cut(s)	747
GsuI	CTGGAG	1 cut(s)	643
HaeIII	GGCC	1 cut(s)	908
HapII	CCGG	1 cut(s)	887
HgaI	GACGC	2 cut(s)	63, 463
HhaI	GCGC	3 cut(s)	228, 230, 777
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	877
Hin6I	GCGC	3 cut(s)	226, 228, 775
HinP1I	GCGC	3 cut(s)	226, 228, 775
HinfI	GANTC	2 cut(s)	538, 764
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	2 cut(s)	596, 709
Hpy166II	GTNNAC	2 cut(s)	453, 587
Hpy188I	TCNGA	8 cut(s)	16, 414, 546, 573, 660, 757, 769, 880
Hpy188III	TCNNGA	4 cut(s)	187, 532, 710, 887
Hpy8I	GTNNAC	2 cut(s)	453, 587
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	8 cut(s)	63, 142, 184, 235, 247, 301, 337, 553
HpyCH4III	ACNGT	4 cut(s)	370, 753, 784, 918
HpyCH4V	TGCA	1 cut(s)	847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 71, 823
HpyF3I	CTNAG	3 cut(s)	168, 711, 738
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	877
HspAI	GCGC	3 cut(s)	226, 228, 775
Kpn2I	TCCGGA	1 cut(s)	886
Kzo9I	GATC	6 cut(s)	118, 219, 528, 573, 706, 714
LmnI	GCTCC	3 cut(s)	337, 624, 831
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	3 cut(s)	224, 834, 892
MaeI	CTAG	3 cut(s)	134, 510, 834
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	6 cut(s)	120, 221, 530, 575, 708, 716
MboI	GATC	6 cut(s)	118, 219, 528, 573, 706, 714
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	3 cut(s)	38, 744, 828
MluCI	AATT	2 cut(s)	158, 651
MmeI	TCCRAC	3 cut(s)	39, 96, 135
MroI	TCCGGA	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	3 cut(s)	354, 474, 863
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	2 cut(s)	23, 761
MvaI	CCWGG	2 cut(s)	23, 761
MvnI	CGCG	3 cut(s)	110, 228, 775
MwoI	GCNNNNNNNGC	3 cut(s)	68, 71, 823
NdeII	GATC	6 cut(s)	118, 219, 528, 573, 706, 714
NlaIII	CATG	1 cut(s)	877
NlaIV	GGNNCC	3 cut(s)	339, 708, 827
PauI	GCGCGC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	4 cut(s)	44, 86, 95, 219
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	538, 764
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	6 cut(s)	64, 67, 70, 73, 97, 567
Ple19I	CGATCG	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	21, 759
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	2 cut(s)	21, 759
PspN4I	GGNNCC	3 cut(s)	339, 708, 827
PspPI	GGNCC	2 cut(s)	634, 906
PsuI	RGATCY	1 cut(s)	706
PteI	GCGCGC	1 cut(s)	226
PvuI	CGATCG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	354, 474, 863
SatI	GCNGC	6 cut(s)	63, 66, 69, 72, 96, 566
Sau3AI	GATC	6 cut(s)	118, 219, 528, 573, 706, 714
Sau96I	GGNCC	2 cut(s)	634, 906
ScrFI	CCNGG	2 cut(s)	23, 761
SduI	GDGCHC	3 cut(s)	38, 744, 828
SetI	ASST	9 cut(s)	38, 104, 153, 213, 474, 515, 601, 732, 762
SfaNI	GCATC	3 cut(s)	224, 834, 892
SfcI	CTRYAG	1 cut(s)	464
SinI	GGWCC	1 cut(s)	634
SmlI	CTYRAG	3 cut(s)	232, 403, 901
SmoI	CTYRAG	3 cut(s)	232, 403, 901
Sse9I	AATT	2 cut(s)	158, 651
SspMI	CTAG	3 cut(s)	134, 510, 834
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	21, 759
TaaI	ACNGT	4 cut(s)	370, 753, 784, 918
TaqI	TCGA	6 cut(s)	89, 125, 218, 329, 579, 717
TasI	AATT	2 cut(s)	158, 651
TauI	GCSGC	5 cut(s)	65, 68, 71, 74, 98
TfiI	GAWTC	2 cut(s)	538, 764
Tru1I	TTAA	3 cut(s)	354, 474, 863
Tru9I	TTAA	3 cut(s)	354, 474, 863
TseI	GCWGC	1 cut(s)	565
TspDTI	ATGAA	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	634
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	3 cut(s)	134, 510, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.