Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001945

Physical Location & Seq

Genomic Coordinates Reverse (-)

56234 .. 60917

Gene Structure 4684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

ATGCATGCTAAGAACCAAGTGTTTTACAACAAAACCCAGGTTAACAATAGAGACGTATCCATTGCGGTTCTGAGGACATTCATAACCAAACGCAAGGAGGAGCATGAAGCAAGATTGTCCAAGAAAACAAAAACTGCGGTGAAGGAGTCTGACAACGATGCTTCAAACTGTGTCGTAGAAGAAGTACCTATTGAGCCCGCTAATCATGAAGAAAAAACCAATGGAGATTGTGAAATGGCAGCAGATGTATCTCAAGATGAACCATGTAGCGTTTCAGAAGAACCAGAGAAGGTCACTGAGGGAAAATGGTGTGGGGAACTGAAGCCACCAAGAGTTCTTGAGGCCTTGTCAGCTTCTGGTTTAAGAGCTCTTAGGTATGCTCGTGAAGTGGAAGGAATTGGTCAAGTTGTTGCTCTAGACAATGATAAAGATGCTGTTGAAGCTTGTAGGAGAAATATCAAGTTCAATGGTTCGGTTGCATGTTCAAAGGTGGAATCACATCTTGCTGATGCCCGTGTGCATATGCTCACCCATCCAAAAGAATTTGATGTGGTCGATCTTGATCCTTATGGTTCTCCCTCTGTCTTCTTGGACTCTGCGGTTCAATCTGTTGTTGATGGAGGATTGCTAATGTGTACGGCAACTGATATGGCTGTGCTATGTGGTGGTAATGGGGAGGTTTGCTATTCAAAATATGGTTCCTATCCATTGAGAGGGAAATATTGTCATGAGATGGCTTTGAGGATCCTCCTAGCTTGCATTGAGAGTCATGCAAATCGATACAAACGATACATTGTTCCTGTGCTATCTGTTCAGATGGACTTTTATGTCCGAGTTTTCGTCCGTATCTACTCTTCTGCAAGTGCAATGAAGAACACTCCCCTTAAGCTCTCCTATGTGTATCAGTGCATTGGTTGCGATTCTTTTCATCTTCAGCCCATTGGAAGGACTGTCACAAAGAACACCAGTGTGAGATATTTACCAGGTTTTGGTCCCATTGTTCCTCAAGAATGCAGTGATTGTGGAAAGAAATTCAATATGGGTGGGCCTATATGGTCTGCTCCTATTCATGATCAAGAATGGGTGACTTCCATACTATCTGATGTGAAGTCTATGAAGGAGCGGTATCCTGCTTATGATCGCATCTCTGCTGTACTAACAACAATTTCAGAGGAACTGCCCGATGTTCCTTTGTTCTTGAGTCTGCACAACCTCTGTGCCACACTTAAGTGCACTTCCCCATCTGCTGTGATTTTCCGTTCTGCTGTGATCAATGCAGGATATCGTATATCTGGAACTCATGTAAACCCATTGGGGTTGAAATCAGATGCTCCCATGGATGTCATTTGGGACATAATGCGCTGTTGGGTGAAGAATCACCCGGTGAAACCTCAGCCTGCGGATCAGTCAGGAACCGTGATACTTGCCAAGGAACCTGTTCTTCAAGCTAACTTTGCTCGAGCTGTTGCGTCTCTGAGCAAGGCACAAACCAAGAAGGTAGCACGCTTCCTGCCAAATCCAGAGAGGCACTGGGGGCCAAAGCTTAGGGCAGGTCGTACAATCACCAGCAAACACATCTCTCTCTTGGGTCCGGAGGCTGTCAATGAACATCTTAACCATGAAGATGGCGAGGAACATGATGCCAAACGTCAAAAGGTTGAAGATCAACCCACCCCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002940 GO:0003674 GO:0003824 GO:0004809 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM

Protein Analysis

561

Amino Acids

62.09

Weight (kDa)

7.23

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM	PF02005	3 - 454	1.7e-116	N2,N2-dimethylguanosine tRNA methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02320 AT5G15810
fragaria_vesca	FvH4_6g46450 FvH4_6g46450 FvH4_6g46450
malus_domestica	MD09G1073500.v1.1 MD17G1065000.v1.1
prunus_persica	Prupe.3G249800_v2.0.a1 Prupe.3G249800_v2.0.a1
pyrus_communis	pycom09g00090 pycom17g06500
rosa_chinensis	RchiOBHm_Chr2g0130081 RchiOBHm_Chr2g0165001
rosa_laevigata	RLG00000008503 RLG00000021506
rosa_multiflora	Rmu_co8255059.1_g000001 Rmu_sc0001097.1_g000019 Rmu_sc0002970.1_g000011 Rmu_sc0022378.1_g000001 Rmu_sc0026009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025420 Rroxscaffold_1G00038210 Rroxscaffold_1G00074000 Rroxscaffold_2G00083080 Rroxscaffold_5G00359260 Rroxscaffold_7G00169970 Rroxscaffold_7G00192270 Rroxscaffold_7G00205690
rosa_rugosa	Rorug02G0291000 Rorug02G0512100
rosa_samantha	Rh1AG215300 Rh1CG199800 Rh1DG211500 Rh2AG509800 Rh2AG580200 Rh2BG350400 Rh2BG572900 Rh2BG591500 Rh2CG495000 Rh2CG562000 Rh2DG601600 Rh4CG060300
rosa_wichuraiana	Rw0G021070 Rw2G027680 Rw2G048160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	827
Acc36I	ACCTGC	1 cut(s)	1541
AccB7I	CCANNNNNTGG	1 cut(s)	989
AccBSI	CCGCTC	1 cut(s)	1123
AccIII	TCCGGA	1 cut(s)	1591
AciI	CCGC	6 cut(s)	65, 137, 198, 599, 1123, 1400
AclWI	GGATC	4 cut(s)	557, 739, 752, 1410
AcsI	RAATTY	2 cut(s)	542, 1031
AcuI	CTGAAG	2 cut(s)	341, 917
AdeI	CACNNNGTG	1 cut(s)	1384
AfaI	GTAC	4 cut(s)	186, 637, 1155, 1558
AfiI	CCNNNNNNNGG	3 cut(s)	713, 945, 989
AflII	CTTAAG	2 cut(s)	884, 1226
AjnI	CCWGG	2 cut(s)	36, 982
AleI	CACNNNNGTG	2 cut(s)	968, 1228
AluBI	AGCT	8 cut(s)	353, 368, 443, 755, 889, 1448, 1463, 1543
AluI	AGCT	8 cut(s)	353, 368, 443, 755, 889, 1448, 1463, 1543
Alw21I	GWGCWC	2 cut(s)	370, 1235
Alw26I	GTCTC	2 cut(s)	45, 1476
Alw44I	GTGCAC	1 cut(s)	1231
AlwI	GGATC	4 cut(s)	557, 739, 752, 1410
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	1458
Aor13HI	TCCGGA	1 cut(s)	1591
AoxI	GGCC	3 cut(s)	342, 1046, 1535
ApaLI	GTGCAC	1 cut(s)	1231
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	2 cut(s)	542, 1031
Asp700I	GAANNNNTTC	1 cut(s)	1437
AspLEI	GCGC	1 cut(s)	1362
AspS9I	GGNCC	4 cut(s)	992, 1046, 1535, 1589
AsuC2I	CCSGG	1 cut(s)	1382
AsuHPI	GGTGA	7 cut(s)	151, 520, 1096, 1370, 1381, 1396, 1555
AvaI	CYCGRG	1 cut(s)	1458
AvaII	GGWCC	2 cut(s)	992, 1589
BaeGI	GKGCMC	1 cut(s)	1235
BamHI	GGATCC	1 cut(s)	744
BanII	GRGCYC	2 cut(s)	198, 370
BarI	GAAGNNNNNNTAC	2 cut(s)	838, 870
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	2 cut(s)	370, 1235
BbvCI	CCTCAGC	1 cut(s)	1392
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	6 cut(s)	540, 611, 727, 811, 1249, 1619
BceAI	ACGGC	1 cut(s)	654
BciT130I	CCWGG	2 cut(s)	38, 984
BciVI	GTATCC	2 cut(s)	67, 1137
BclI	TGATCA	2 cut(s)	1072, 1269
BcnI	CCSGG	1 cut(s)	1382
BcoDI	GTCTC	2 cut(s)	45, 1476
BfaI	CTAG	2 cut(s)	416, 752
BfrI	CTTAAG	2 cut(s)	884, 1226
BfuAI	ACCTGC	1 cut(s)	1541
BfuI	GTATCC	2 cut(s)	67, 1137
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	3 cut(s)	38, 984, 1382
Bme18I	GGWCC	2 cut(s)	992, 1589
BmeT110I	CYCGRG	1 cut(s)	1458
BmgT120I	GGNCC	4 cut(s)	992, 1046, 1535, 1589
BmiI	GGNNCC	7 cut(s)	700, 746, 994, 1414, 1434, 1536, 1590
BmrFI	CCNGG	3 cut(s)	38, 984, 1382
BmrI	ACTGGG	1 cut(s)	1540
BmsI	GCATC	6 cut(s)	148, 421, 499, 1152, 1318, 1630
BmuI	ACTGGG	1 cut(s)	1540
BpiI	GAAGAC	1 cut(s)	577
Bpu10I	CCTNAGC	2 cut(s)	1392, 1544
BpuEI	CTTGAG	4 cut(s)	237, 359, 990, 1219
BpuMI	CCSGG	1 cut(s)	1382
Bsa29I	ATCGAT	1 cut(s)	778
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	36, 1335, 1428
BsaWI	WCCGGW	1 cut(s)	1591
Bsc4I	CCNNNNNNNGG	3 cut(s)	713, 945, 989
Bse1I	ACTGG	2 cut(s)	966, 1535
Bse3DI	GCAATG	2 cut(s)	60, 873
Bse8I	GATNNNNATC	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	1591
BseBI	CCWGG	2 cut(s)	38, 984
BseCI	ATCGAT	1 cut(s)	778
BseDI	CCNNGG	3 cut(s)	36, 1335, 1428
BseGI	GGATG	2 cut(s)	532, 1345
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	3 cut(s)	713, 945, 989
BseMI	GCAATG	2 cut(s)	60, 873
BseMII	CTCAG	4 cut(s)	62, 288, 1406, 1466
BseNI	ACTGG	2 cut(s)	966, 1535
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	1235
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	1190
BshFI	GGCC	3 cut(s)	344, 1048, 1537
BshVI	ATCGAT	1 cut(s)	778
BsiHKAI	GWGCWC	2 cut(s)	370, 1235
BsiHKCI	CYCGRG	1 cut(s)	1458
BsiSI	CCGG	2 cut(s)	1382, 1592
BslFI	GGGAC	2 cut(s)	978, 1364
BslI	CCNNNNNNNGG	3 cut(s)	713, 945, 989
BsmAI	GTCTC	2 cut(s)	45, 1476
BsmBI	CGTCTC	2 cut(s)	45, 1476
BsmFI	GGGAC	2 cut(s)	978, 1364
BsmI	GAATGC	1 cut(s)	1016
BsnI	GGCC	3 cut(s)	344, 1048, 1537
BsoBI	CYCGRG	1 cut(s)	1458
Bsp1286I	GDGCHC	3 cut(s)	198, 370, 1235
Bsp13I	TCCGGA	1 cut(s)	1591
Bsp143I	GATC	8 cut(s)	556, 562, 744, 1072, 1138, 1269, 1402, 1663
Bsp19I	CCATGG	1 cut(s)	1335
BspACI	CCGC	6 cut(s)	65, 137, 198, 599, 1123, 1400
BspANI	GGCC	3 cut(s)	344, 1048, 1537
BspCNI	CTCAG	4 cut(s)	63, 289, 1405, 1467
BspDI	ATCGAT	1 cut(s)	778
BspEI	TCCGGA	1 cut(s)	1591
BspHI	TCATGA	3 cut(s)	205, 727, 1069
BspLI	GGNNCC	7 cut(s)	700, 746, 994, 1414, 1434, 1536, 1590
BspMI	ACCTGC	1 cut(s)	1541
BspPI	GGATC	4 cut(s)	557, 739, 752, 1410
BspTI	CTTAAG	2 cut(s)	884, 1226
BsrBI	CCGCTC	1 cut(s)	1123
BsrDI	GCAATG	2 cut(s)	60, 873
BsrI	ACTGG	2 cut(s)	966, 1535
BssECI	CCNNGG	3 cut(s)	36, 1335, 1428
BssMI	GATC	8 cut(s)	556, 562, 744, 1072, 1138, 1269, 1402, 1663
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	1335, 1428
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	38, 984
Bst4CI	ACNGT	3 cut(s)	170, 952, 1417
Bst6I	CTCTTC	1 cut(s)	859
BstAFI	CTTAAG	2 cut(s)	884, 1226
BstAPI	GCANNNNNTGC	1 cut(s)	915
BstC8I	GCNNGC	5 cut(s)	6, 198, 757, 1398, 1504
BstDEI	CTNAG	7 cut(s)	9, 71, 297, 371, 1392, 1475, 1544
BstDSI	CCRYGG	1 cut(s)	1335
BstF5I	GGATG	2 cut(s)	532, 1345
BstHHI	GCGC	1 cut(s)	1362
BstKTI	GATC	8 cut(s)	559, 565, 747, 1075, 1141, 1272, 1405, 1666
BstMAI	GTCTC	2 cut(s)	45, 1476
BstMBI	GATC	8 cut(s)	556, 562, 744, 1072, 1138, 1269, 1402, 1663
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 440, 915, 1454, 1534
BstNI	CCWGG	2 cut(s)	38, 984
BstNSI	RCATGY	2 cut(s)	8, 483
BstSCI	CCNGG	3 cut(s)	36, 982, 1380
BstSLI	GKGCMC	1 cut(s)	1235
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	744
BstXI	CCANNNNNNTGG	1 cut(s)	1625
BstYI	RGATCY	1 cut(s)	744
Bsu15I	ATCGAT	1 cut(s)	778
BsuI	GTATCC	2 cut(s)	67, 1137
BsuRI	GGCC	3 cut(s)	344, 1048, 1537
BsuTUI	ATCGAT	1 cut(s)	778
BtgI	CCRYGG	1 cut(s)	1335
BtsCI	GGATG	2 cut(s)	532, 1345
BtsI	GCAGTG	1 cut(s)	1021
BtsIMutI	CAGTG	5 cut(s)	294, 911, 973, 1021, 1528
BveI	ACCTGC	1 cut(s)	1541
Cac8I	GCNNGC	5 cut(s)	6, 198, 757, 1398, 1504
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	3 cut(s)	205, 727, 1069
CfoI	GCGC	1 cut(s)	1362
Cfr13I	GGNCC	4 cut(s)	992, 1046, 1535, 1589
ClaI	ATCGAT	1 cut(s)	778
CseI	GACGC	1 cut(s)	1458
CsiI	ACCWGGT	1 cut(s)	982
Csp6I	GTAC	4 cut(s)	185, 636, 1154, 1557
CspCI	CAANNNNNGTGG	2 cut(s)	1024, 1059
CviQI	GTAC	4 cut(s)	185, 636, 1154, 1557
DdeI	CTNAG	7 cut(s)	9, 71, 297, 371, 1392, 1475, 1544
DpnI	GATC	8 cut(s)	558, 564, 746, 1074, 1140, 1271, 1404, 1665
DpnII	GATC	8 cut(s)	556, 562, 744, 1072, 1138, 1269, 1402, 1663
DraIII	CACNNNGTG	1 cut(s)	1384
DrdI	GACNNNNNNGTC	1 cut(s)	827
DseDI	GACNNNNNNGTC	1 cut(s)	827
Eam1104I	CTCTTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	859
Ecl136II	GAGCTC	1 cut(s)	368
Eco130I	CCWWGG	2 cut(s)	1335, 1428
Eco147I	AGGCCT	1 cut(s)	344
Eco24I	GRGCYC	2 cut(s)	198, 370
Eco32I	GATATC	1 cut(s)	1283
Eco47I	GGWCC	2 cut(s)	992, 1589
Eco53kI	GAGCTC	1 cut(s)	368
Eco57I	CTGAAG	2 cut(s)	341, 917
Eco88I	CYCGRG	1 cut(s)	1458
EcoICRI	GAGCTC	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	36, 982
EcoRV	GATATC	1 cut(s)	1283
EcoT14I	CCWWGG	2 cut(s)	1335, 1428
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	198, 370
ErhI	CCWWGG	2 cut(s)	1335, 1428
Esp3I	CGTCTC	2 cut(s)	45, 1476
FaqI	GGGAC	2 cut(s)	978, 1364
FauI	CCCGC	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	2 cut(s)	1072, 1269
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	519, 1352
FriOI	GRGCYC	2 cut(s)	198, 370
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	416, 752
GlaI	GCGC	1 cut(s)	1361
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	344, 1048, 1537
HapII	CCGG	2 cut(s)	1382, 1592
HgaI	GACGC	1 cut(s)	1458
HhaI	GCGC	1 cut(s)	1362
Hin6I	GCGC	1 cut(s)	1360
HinP1I	GCGC	1 cut(s)	1360
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	2 cut(s)	441, 1541
HinfI	GANTC	7 cut(s)	146, 494, 593, 766, 920, 1201, 1375
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	1382, 1592
HphI	GGTGA	7 cut(s)	151, 520, 1096, 1370, 1381, 1396, 1555
Hpy166II	GTNNAC	4 cut(s)	43, 636, 1233, 1306
Hpy188I	TCNGA	9 cut(s)	72, 151, 277, 816, 833, 1102, 1171, 1327, 1476
Hpy8I	GTNNAC	4 cut(s)	43, 636, 1233, 1306
HpyAV	CCTTC	6 cut(s)	136, 283, 386, 939, 1111, 1489
HpyCH4III	ACNGT	3 cut(s)	170, 952, 1417
HpyCH4IV	ACGT	2 cut(s)	54, 1648
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 440, 915, 1454, 1534
HpyF3I	CTNAG	7 cut(s)	9, 71, 297, 371, 1392, 1475, 1544
HpySE526I	ACGT	2 cut(s)	54, 1648
HspAI	GCGC	1 cut(s)	1360
Kpn2I	TCCGGA	1 cut(s)	1591
Ksp22I	TGATCA	2 cut(s)	1072, 1269
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	8 cut(s)	556, 562, 744, 1072, 1138, 1269, 1402, 1663
LmnI	GCTCC	4 cut(s)	100, 1066, 1120, 1336
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	6 cut(s)	148, 421, 499, 1152, 1318, 1630
MabI	ACCWGGT	1 cut(s)	982
MaeI	CTAG	2 cut(s)	416, 752
MaeII	ACGT	2 cut(s)	54, 1648
MaeIII	GTNAC	3 cut(s)	292, 952, 1084
MalI	GATC	8 cut(s)	558, 564, 746, 1074, 1140, 1271, 1404, 1665
MbiI	CCGCTC	1 cut(s)	1123
MboI	GATC	8 cut(s)	556, 562, 744, 1072, 1138, 1269, 1402, 1663
MflI	RGATCY	1 cut(s)	744
MhlI	GDGCHC	3 cut(s)	198, 370, 1235
MluCI	AATT	5 cut(s)	396, 542, 1031, 1164, 1678
MlyI	GAGTC	4 cut(s)	155, 587, 775, 1210
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	1591
MroXI	GAANNNNTTC	1 cut(s)	1437
MseI	TTAA	5 cut(s)	42, 362, 885, 1227, 1614
MslI	CAYNNNNRTG	3 cut(s)	968, 1228, 1623
MspCI	CTTAAG	2 cut(s)	884, 1226
MspI	CCGG	2 cut(s)	1382, 1592
MspR9I	CCNGG	3 cut(s)	38, 984, 1382
Mva1269I	GAATGC	1 cut(s)	1016
MvaI	CCWGG	2 cut(s)	38, 984
MwoI	GCNNNNNNNGC	5 cut(s)	350, 440, 915, 1454, 1534
NciI	CCSGG	1 cut(s)	1382
NcoI	CCATGG	1 cut(s)	1335
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	8 cut(s)	556, 562, 744, 1072, 1138, 1269, 1402, 1663
NlaIV	GGNNCC	7 cut(s)	700, 746, 994, 1414, 1434, 1536, 1590
NmuCI	GTSAC	3 cut(s)	292, 952, 1084
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 483
OliI	CACNNNNGTG	2 cut(s)	968, 1228
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	1458
PagI	TCATGA	3 cut(s)	205, 727, 1069
PceI	AGGCCT	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	784
PctI	GAATGC	1 cut(s)	1016
PdmI	GAANNNNTTC	1 cut(s)	1437
PfeI	GAWTC	3 cut(s)	494, 920, 1375
PflMI	CCANNNNNTGG	1 cut(s)	989
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	4 cut(s)	154, 587, 774, 1209
PpsI	GAGTC	4 cut(s)	154, 587, 774, 1209
Psp124BI	GAGCTC	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	36, 982
PspGI	CCWGG	2 cut(s)	36, 982
PspN4I	GGNNCC	7 cut(s)	700, 746, 994, 1414, 1434, 1536, 1590
PspPI	GGNCC	4 cut(s)	992, 1046, 1535, 1589
PspXI	VCTCGAGB	1 cut(s)	1458
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	744
RsaI	GTAC	4 cut(s)	186, 637, 1155, 1558
RsaNI	GTAC	4 cut(s)	185, 636, 1154, 1557
RseI	CAYNNNNRTG	3 cut(s)	968, 1228, 1623
SacI	GAGCTC	1 cut(s)	370
SaqAI	TTAA	5 cut(s)	42, 362, 885, 1227, 1614
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	8 cut(s)	556, 562, 744, 1072, 1138, 1269, 1402, 1663
Sau96I	GGNCC	4 cut(s)	992, 1046, 1535, 1589
SchI	GAGTC	4 cut(s)	155, 587, 775, 1210
ScrFI	CCNGG	3 cut(s)	38, 984, 1382
SduI	GDGCHC	3 cut(s)	198, 370, 1235
SexAI	ACCWGGT	1 cut(s)	982
SfaNI	GCATC	6 cut(s)	148, 421, 499, 1152, 1318, 1630
Sfr274I	CTCGAG	1 cut(s)	1458
SinI	GGWCC	2 cut(s)	992, 1589
SlaI	CTCGAG	1 cut(s)	1458
SmiMI	CAYNNNNRTG	3 cut(s)	968, 1228, 1623
SmlI	CTYRAG	7 cut(s)	252, 338, 884, 1005, 1198, 1226, 1458
SmoI	CTYRAG	7 cut(s)	252, 338, 884, 1005, 1198, 1226, 1458
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	5 cut(s)	396, 542, 1031, 1164, 1678
SseBI	AGGCCT	1 cut(s)	344
SsiI	CCGC	6 cut(s)	65, 137, 198, 599, 1123, 1400
SspI	AATATT	1 cut(s)	722
SspMI	CTAG	2 cut(s)	416, 752
SstI	GAGCTC	1 cut(s)	370
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	3 cut(s)	36, 982, 1380
StyI	CCWWGG	2 cut(s)	1335, 1428
TaaI	ACNGT	3 cut(s)	170, 952, 1417
TaiI	ACGT	2 cut(s)	57, 1651
TaqI	TCGA	3 cut(s)	555, 778, 1459
TasI	AATT	5 cut(s)	396, 542, 1031, 1164, 1678
TatI	WGTACW	1 cut(s)	1153
TfiI	GAWTC	3 cut(s)	494, 920, 1375
Tru1I	TTAA	5 cut(s)	42, 362, 885, 1227, 1614
Tru9I	TTAA	5 cut(s)	42, 362, 885, 1227, 1614
TscAI	CASTG	5 cut(s)	301, 911, 973, 1021, 1535
TseFI	GTSAC	3 cut(s)	292, 952, 1084
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	3 cut(s)	292, 952, 1084
TspGWI	ACGGA	2 cut(s)	833, 1247
TspRI	CASTG	5 cut(s)	301, 911, 973, 1021, 1535
Van91I	CCANNNNNTGG	1 cut(s)	989
Vha464I	CTTAAG	2 cut(s)	884, 1226
VneI	GTGCAC	1 cut(s)	1231
VpaK11BI	GGWCC	2 cut(s)	992, 1589
XapI	RAATTY	2 cut(s)	542, 1031
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	2 cut(s)	8, 483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1527
XhoI	CTCGAG	1 cut(s)	1458
XmnI	GAANNNNTTC	1 cut(s)	1437
XspI	CTAG	2 cut(s)	416, 752
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.