pycom10g01210

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003162
Physical Location & Seq
Forward (+)
1271923 .. 1272502
580 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGGATTATTCACCAGGAAAATCTCCAAGAAGAGAGCTTCAACTCCAAGGTCCACGTCCAACGCCTCTCAAGATACACAAAGACTCTCACAAGATCAAGAAACCTCCAGTTGCACCACAACCGTCACAACAACCAAACCAGCAGCAGCAGCCCCATCACTACCAGCAGCCACGTCAACCGGTCATAATCTACACGGTGTCCCCGAAGGTCATCCACACAAACCCTAGCGAGTTCATGGATCTTGTCCAACGCCTCACCGGCTTACCACCATCGAATTCATCTACTGCATCTTCTTCCCCGCCTAGTAATAACAATATTAATCCTCCAAATTACGATAACTATAATAATCCTCCAGCTCATGATGATCAAGGGATGAAGAAAGCTAGTACTGCTCAAGATGTTGTGGAAGAAATGGAAATTATGGATGGTGGTGGCAAAGGGGTATGTTTCCAGGGATCTTGTCGCCTGGGCCCGCTTCGCTTACTCCGATTCCTTCAAACTTCTTCTCTCCGCCGGCGGATAGCTTCTTTCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
VQ

Protein Analysis

180

Amino Acids

20.01

Weight (kDa)

9.73

Isoelectric Point (pI)

83.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 65 - 90 4.6e-13 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 299, 473, 511, 517
AclWI GGATC 2 cut(s) 246, 463
AcsI RAATTY 1 cut(s) 274
AfaI GTAC 1 cut(s) 388
AgeI ACCGGT 1 cut(s) 178
AgsI TTSAA 2 cut(s) 41, 497
AjiI CACGTC 2 cut(s) 56, 173
AjnI CCWGG 3 cut(s) 13, 450, 465
AluBI AGCT 4 cut(s) 37, 356, 383, 524
AluI AGCT 4 cut(s) 37, 356, 383, 524
AlwI GGATC 2 cut(s) 246, 463
AoxI GGCC 1 cut(s) 469
ApaI GGGCCC 1 cut(s) 473
ApeKI GCWGC 4 cut(s) 142, 145, 148, 166
ApoI RAATTY 1 cut(s) 274
AseI ATTAAT 1 cut(s) 318
AsiGI ACCGGT 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 50, 469, 470
AsuHPI GGTGA 2 cut(s) 3, 247
AvaII GGWCC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 473
BanII GRGCYC 1 cut(s) 473
BbvI GCAGC 4 cut(s) 154, 157, 160, 178
BccI CCATC 3 cut(s) 162, 277, 419
BciT130I CCWGG 3 cut(s) 15, 452, 467
BclI TGATCA 1 cut(s) 364
BfaI CTAG 3 cut(s) 225, 303, 384
BglI GCCNNNNNGGC 1 cut(s) 258
BisI GCNGC 4 cut(s) 143, 146, 149, 167
BlsI GCNGC 4 cut(s) 144, 147, 150, 168
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 3 cut(s) 15, 452, 467
Bme18I GGWCC 1 cut(s) 50
BmgBI CACGTC 2 cut(s) 56, 173
BmgT120I GGNCC 3 cut(s) 50, 469, 470
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 3 cut(s) 15, 452, 467
BmsI GCATC 1 cut(s) 296
BpmI CTGGAG 2 cut(s) 90, 336
BpuEI CTTGAG 2 cut(s) 53, 378
BsaJI CCNNGG 3 cut(s) 46, 451, 466
BsaWI WCCGGW 1 cut(s) 178
Bse118I RCCGGY 3 cut(s) 178, 257, 513
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 3 cut(s) 15, 452, 467
BseDI CCNNGG 3 cut(s) 46, 451, 466
BseGI GGATG 3 cut(s) 210, 378, 430
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 4 cut(s) 154, 157, 160, 178
BshFI GGCC 1 cut(s) 471
BshTI ACCGGT 1 cut(s) 178
BsiSI CCGG 3 cut(s) 179, 258, 514
BslFI GGGAC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 471
Bsp120I GGGCCC 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 4 cut(s) 93, 238, 364, 455
BspACI CCGC 4 cut(s) 299, 473, 511, 517
BspANI GGCC 1 cut(s) 471
BspHI TCATGA 2 cut(s) 358, 531
BspLI GGNNCC 1 cut(s) 471
BspPI GGATC 2 cut(s) 246, 463
BsrFI RCCGGY 3 cut(s) 178, 257, 513
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 3 cut(s) 178, 257, 513
BssECI CCNNGG 3 cut(s) 46, 451, 466
BssMI GATC 4 cut(s) 93, 238, 364, 455
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 3 cut(s) 15, 452, 467
Bst4CI ACNGT 2 cut(s) 123, 196
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 473, 515
BstF5I GGATG 3 cut(s) 210, 378, 430
BstKTI GATC 4 cut(s) 96, 241, 367, 458
BstMBI GATC 4 cut(s) 93, 238, 364, 455
BstMWI GCNNNNNNNGC 4 cut(s) 148, 258, 389, 477
BstNI CCWGG 3 cut(s) 15, 452, 467
BstSCI CCNGG 3 cut(s) 13, 450, 465
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 4 cut(s) 154, 157, 160, 178
BstX2I RGATCY 2 cut(s) 238, 455
BstYI RGATCY 2 cut(s) 238, 455
BsuRI GGCC 1 cut(s) 471
BtrI CACGTC 2 cut(s) 56, 173
BtsCI GGATG 3 cut(s) 210, 378, 430
Cac8I GCNNGC 2 cut(s) 473, 515
CciI TCATGA 2 cut(s) 358, 531
Cfr10I RCCGGY 3 cut(s) 178, 257, 513
Cfr13I GGNCC 3 cut(s) 50, 469, 470
Csp6I GTAC 1 cut(s) 387
CspAI ACCGGT 1 cut(s) 178
CviAII CATG 3 cut(s) 235, 359, 532
CviJI RGCY 8 cut(s) 37, 151, 169, 261, 356, 383, 471, 524
CviKI_1 RGCY 8 cut(s) 37, 151, 169, 261, 356, 383, 471, 524
CviQI GTAC 1 cut(s) 387
DpnI GATC 4 cut(s) 95, 240, 366, 457
DpnII GATC 4 cut(s) 93, 238, 364, 455
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 2 cut(s) 500, 532
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 3 cut(s) 13, 450, 465
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 238, 362, 535
FaiI YATR 7 cut(s) 185, 236, 342, 360, 422, 445, 533
FaqI GGGAC 1 cut(s) 184
FatI CATG 3 cut(s) 234, 358, 531
FauI CCCGC 2 cut(s) 306, 480
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 4 cut(s) 143, 146, 149, 167
FokI GGATG 3 cut(s) 197, 385, 437
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 4 cut(s) 143, 146, 149, 167
FspBI CTAG 3 cut(s) 225, 303, 384
GluI GCNGC 4 cut(s) 143, 146, 149, 167
GsuI CTGGAG 2 cut(s) 90, 336
HaeIII GGCC 1 cut(s) 471
HapII CCGG 3 cut(s) 179, 258, 514
Hin1II CATG 3 cut(s) 238, 362, 535
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 2 cut(s) 83, 489
HpaII CCGG 3 cut(s) 179, 258, 514
HphI GGTGA 2 cut(s) 3, 247
Hpy166II GTNNAC 2 cut(s) 53, 176
Hpy188I TCNGA 1 cut(s) 488
Hpy188III TCNNGA 5 cut(s) 70, 97, 359, 395, 532
Hpy8I GTNNAC 2 cut(s) 53, 176
HpyAV CCTTC 2 cut(s) 199, 503
HpyCH4III ACNGT 2 cut(s) 123, 196
HpyCH4IV ACGT 2 cut(s) 55, 172
HpyCH4V TGCA 2 cut(s) 113, 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 258, 389, 477
HpySE526I ACGT 2 cut(s) 55, 172
Hsp92II CATG 3 cut(s) 238, 362, 535
KroI GCCGGC 1 cut(s) 513
KroNI GCCGGC 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 4 cut(s) 93, 238, 364, 455
Lsp1109I GCAGC 4 cut(s) 154, 157, 160, 178
LweI GCATC 1 cut(s) 296
MaeI CTAG 3 cut(s) 225, 303, 384
MaeII ACGT 2 cut(s) 55, 172
MaeIII GTNAC 1 cut(s) 123
MalI GATC 4 cut(s) 95, 240, 366, 457
MboI GATC 4 cut(s) 93, 238, 364, 455
MboII GAAGA 6 cut(s) 42, 282, 285, 388, 419, 495
MflI RGATCY 2 cut(s) 238, 455
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 3 cut(s) 274, 328, 417
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 2 cut(s) 83, 271
MnlI CCTC 5 cut(s) 75, 114, 263, 333, 360
MreI CGCCGGCG 1 cut(s) 513
MroNI GCCGGC 1 cut(s) 513
MseI TTAA 1 cut(s) 318
MspI CCGG 3 cut(s) 179, 258, 514
MspR9I CCNGG 3 cut(s) 15, 452, 467
MvaI CCWGG 3 cut(s) 15, 452, 467
MwoI GCNNNNNNNGC 4 cut(s) 148, 258, 389, 477
NaeI GCCGGC 1 cut(s) 515
NdeII GATC 4 cut(s) 93, 238, 364, 455
NgoMIV GCCGGC 1 cut(s) 513
NlaIII CATG 3 cut(s) 238, 362, 535
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 123
PagI TCATGA 2 cut(s) 358, 531
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 484
PdiI GCCGGC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 489
PinAI ACCGGT 1 cut(s) 178
PkrI GCNGC 4 cut(s) 144, 147, 150, 168
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PshBI ATTAAT 1 cut(s) 318
Psp6I CCWGG 3 cut(s) 13, 450, 465
PspGI CCWGG 3 cut(s) 13, 450, 465
PspN4I GGNNCC 1 cut(s) 471
PspOMI GGGCCC 1 cut(s) 469
PspPI GGNCC 3 cut(s) 50, 469, 470
PsuI RGATCY 2 cut(s) 238, 455
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 4 cut(s) 143, 146, 149, 167
Sau3AI GATC 4 cut(s) 93, 238, 364, 455
Sau96I GGNCC 3 cut(s) 50, 469, 470
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 3 cut(s) 15, 452, 467
SduI GDGCHC 1 cut(s) 473
SetI ASST 9 cut(s) 39, 52, 58, 106, 175, 210, 358, 385, 526
SfaNI GCATC 1 cut(s) 296
SgrAI CRCCGGYG 1 cut(s) 513
SinI GGWCC 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 68, 393
SmoI CTYRAG 2 cut(s) 68, 393
Sse9I AATT 3 cut(s) 274, 328, 417
SsiI CCGC 4 cut(s) 299, 473, 511, 517
SspI AATATT 1 cut(s) 316
SspMI CTAG 3 cut(s) 225, 303, 384
StyD4I CCNGG 3 cut(s) 13, 450, 465
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 123, 196
TaiI ACGT 2 cut(s) 58, 175
TaqI TCGA 1 cut(s) 272
TasI AATT 3 cut(s) 274, 328, 417
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 1 cut(s) 489
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 4 cut(s) 142, 145, 148, 166
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 4 cut(s) 223, 267, 389, 520
VpaK11BI GGWCC 1 cut(s) 50
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 1 cut(s) 274
XspI CTAG 3 cut(s) 225, 303, 384
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.